Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g44926 Chara braunii HOM05D004394 ORTHO05D005208 7.3e-65 250.4 123 100.0
Mapoly0008s0078 Marchantia polymorpha HOM05D004394 ORTHO05D005208 8.7e-50 200.3 123 72.4
Pp3c10_8220 Physcomitrium patens HOM05D004394 ORTHO05D005208 6.2e-48 194.1 123 72.4
SMO356G0508 Selaginella moellendorffii HOM05D004394 ORTHO05D005208 5.8e-46 187.6 123 69.1
SEGI_05614 Sequoiadendron giganteum HOM05D004394 ORTHO05D005208 3.8e-45 184.9 123 65.9
MD08G1182900 Malus domestica HOM05D004394 ORTHO05D005208 1.6e-43 179.5 123 67.5
Potri.002G096600 Populus trichocarpa HOM05D004394 ORTHO05D005208 2.1e-43 179.1 123 66.7
PSO781G0205 Papaver somniferum HOM05D004394 ORTHO05D005208 2.7e-43 178.7 123 66.7
SGA_v2.0_scaffold24G10492 Striga asiatica HOM05D004394 ORTHO05D005208 2.7e-43 178.7 123 65.9
TAR628G0041 Trochodendron aralioides HOM05D004394 ORTHO05D005208 3.5e-43 178.3 123 63.4
CANSAT80G0901 Cannabis sativa HOM05D004394 ORTHO05D005208 4.6e-43 177.9 123 65.0
Sabra02G0076100 Salix brachista HOM05D004394 ORTHO05D005208 4.6e-43 177.9 123 65.9
TAR376G0181 Trochodendron aralioides HOM05D004394 ORTHO05D005208 4.6e-43 177.9 123 64.2
Carub.0001s2182 Capsella rubella HOM05D004394 ORTHO05D005208 7.9e-43 177.2 125 69.6
Nn2g12152 Nelumbo nucifera HOM05D004394 ORTHO05D005208 7.9e-43 177.2 123 64.2
Prupe.1G517100 Prunus persica HOM05D004394 ORTHO05D005208 7.9e-43 177.2 123 67.5
PSO541G5821 Papaver somniferum HOM05D004394 ORTHO05D005208 1.0e-42 176.8 123 65.9
Sabra05G0124400 Salix brachista HOM05D004394 ORTHO05D005208 1.0e-42 176.8 121 66.9
BraA07t29204Z Brassica rapa HOM05D004394 ORTHO05D005208 1.8e-42 176.0 126 66.7
BcaC06g34947 Brassica carinata HOM05D004394 ORTHO05D005208 2.3e-42 175.6 126 65.9
BolC7t42673H Brassica oleracea HOM05D004394 ORTHO05D005208 2.3e-42 175.6 126 65.9
unitig_899.g14554 Utricularia gibba HOM05D000298 ORTHO05D000553 2.3e-42 175.6 123 65.0
Migut.C01173 Erythranthe guttata HOM05D004394 ORTHO05D005208 3.0e-42 175.3 123 66.7
ATR0782G020 Amborella trichopoda HOM05D004394 ORTHO05D005208 3.9e-42 174.9 123 64.2
BcaB07g32248 Brassica carinata HOM05D004394 ORTHO05D005208 3.9e-42 174.9 129 64.3
PGR042G0728 Punica granatum HOM05D004394 ORTHO05D005208 3.9e-42 174.9 123 65.9
A09p42510 Brassica napus HOM05D004394 ORTHO05D005208 5.1e-42 174.5 128 65.6
BraA09t39727Z Brassica rapa HOM05D004394 ORTHO05D005208 5.1e-42 174.5 128 65.6
Potri.005G165000 Populus trichocarpa HOM05D004394 ORTHO05D005208 5.1e-42 174.5 123 64.2
SalBow7G3516 Salvia bowleyana HOM05D004394 ORTHO05D005208 6.7e-42 174.1 123 65.0
Actinidia10324 Actinidia chinensis HOM05D004394 ORTHO05D005208 8.7e-42 173.7 123 65.9
BcaC05g26154 Brassica carinata HOM05D004394 ORTHO05D005208 8.7e-42 173.7 127 65.4
C05p21390 Brassica napus HOM05D004394 ORTHO05D005208 8.7e-42 173.7 127 65.4
Nn5g30107 Nelumbo nucifera HOM05D004394 ORTHO05D005208 8.7e-42 173.7 122 61.5
C07p21470 Brassica napus HOM05D004394 ORTHO05D005208 1.1e-41 173.3 124 65.3
SalBow7G2639 Salvia bowleyana HOM05D004394 ORTHO05D005208 1.1e-41 173.3 123 65.0
A07p14580 Brassica napus HOM05D004394 ORTHO05D005208 1.5e-41 172.9 125 65.6
AUR62036356 Chenopodium quinoa HOM05D004394 ORTHO05D005208 1.5e-41 172.9 123 65.0
QL12p036785 Quercus lobata HOM05D004394 ORTHO05D005208 1.5e-41 172.9 122 64.8
AT1G22270 Arabidopsis thaliana HOM05D004394 ORTHO05D005208 1.9e-41 172.6 125 64.8
AUR62030717 Chenopodium quinoa HOM05D004394 ORTHO05D005208 1.9e-41 172.6 123 65.0
Lalb_Chr08g0242051 Lupinus albus HOM05D004394 ORTHO05D005208 1.9e-41 172.6 123 64.2
Sp1g19780 Schrenkiella parvula HOM05D004394 ORTHO05D005208 1.9e-41 172.6 126 64.3
Sc01g0000460 Simmondsia chinensis HOM05D004394 ORTHO05D005208 1.9e-41 172.6 123 66.7
Aqoxy6G00782 Aquilegia oxysepala HOM05D004394 ORTHO05D005208 2.5e-41 172.2 123 64.2
Oeu046302.1 Olea europaea HOM05D004394 ORTHO05D005208 2.5e-41 172.2 123 64.2
AL1G35720 Arabidopsis lyrata HOM05D004394 ORTHO05D005208 3.3e-41 171.8 125 64.8
FAN08G2022 Fragaria x ananassa HOM05D004394 ORTHO05D005208 3.3e-41 171.8 123 64.2
MBI05_g37052_MAGBIO Magnolia biondii HOM05D004394 ORTHO05D005208 3.3e-41 171.8 123 62.6
Aa31LG7G6210 Aethionema arabicum HOM05D004394 ORTHO05D005208 4.3e-41 171.4 125 65.6
EL10Ac5g11858 Beta vulgaris HOM05D004394 ORTHO05D005208 4.3e-41 171.4 123 64.2
THA.LOC104800150 Tarenaya hassleriana HOM05D004394 ORTHO05D005208 4.3e-41 171.4 125 64.8
GSVIVG01032524001 Vitis vinifera HOM05D004394 ORTHO05D005208 4.3e-41 171.4 123 61.0
Gohir.A06G035600 Gossypium hirsutum HOM05D004394 ORTHO05D005208 5.6e-41 171.0 125 68.0
Ah.12g059310 Amaranthus hybridus HOM05D004394 ORTHO05D005208 7.4e-41 170.6 123 65.0
CANSAT80G2869 Cannabis sativa HOM05D004394 ORTHO05D005208 7.4e-41 170.6 123 61.0
Actinidia30773 Actinidia chinensis HOM05D004394 ORTHO05D005208 9.6e-41 170.2 122 63.9
Cc10_g07190 Coffea canephora HOM05D004394 ORTHO05D005208 9.6e-41 170.2 123 62.6
TPR.G10620 Trifolium pratense HOM05D004394 ORTHO05D005208 9.6e-41 170.2 123 62.6
CSS0017732 Camellia sinensis var. sinensis HOM05D004394 ORTHO05D005208 1.3e-40 169.9 123 61.8
CAN.G101.27 Capsicum annuum HOM05D004394 ORTHO05D005208 1.3e-40 169.9 123 63.4
Peaxi162Scf00041g00179 Petunia axillaris HOM05D004394 ORTHO05D005208 1.3e-40 169.9 123 61.8
CARHR022650 Cardamine hirsuta HOM05D004394 ORTHO05D005208 1.6e-40 169.5 125 64.0
FAN13G1242 Fragaria x ananassa HOM05D004394 ORTHO05D005208 1.6e-40 169.5 123 63.4
Manes.08G094000 Manihot esculenta HOM05D004394 ORTHO05D005208 1.6e-40 169.5 123 63.4
ClCG08G011100 Citrullus lanatus HOM05D004394 ORTHO05D005208 2.1e-40 169.1 123 61.0
ECA238G4620 Erigeron canadensis HOM05D004394 ORTHO05D005208 2.1e-40 169.1 124 62.9
Gohir.D06G036200 Gossypium hirsutum HOM05D004394 ORTHO05D005208 2.1e-40 169.1 125 67.2
Gorai.010G040200 Gossypium raimondii HOM05D004394 ORTHO05D005208 2.1e-40 169.1 125 67.2
Ca_20267_v3 Cicer arietinum L. HOM05D004394 ORTHO05D005208 2.8e-40 168.7 123 63.4
FvH4_5g37330 Fragaria vesca HOM05D004394 ORTHO05D005208 2.8e-40 168.7 123 63.4
FAN18G2812 Fragaria x ananassa HOM05D004394 ORTHO05D005208 2.8e-40 168.7 123 63.4
Lj2g0026973 Lotus japonicus HOM05D004394 ORTHO05D005208 2.8e-40 168.7 123 63.4
RcHm_v2.0_Chr7g0238971 Rosa chinensis HOM05D004394 ORTHO05D005208 2.8e-40 168.7 123 64.2
Thecc.08G106700 Theobroma cacao HOM05D004394 ORTHO05D005208 3.7e-40 168.3 125 64.8
Ciclev10003351m.g Citrus clementina HOM05D004394 ORTHO05D005208 4.8e-40 167.9 124 62.9
Duzib041G0085 Durio zibethinus HOM05D004394 ORTHO05D005208 4.8e-40 167.9 125 66.4
PGSC0003DMG400006413 Solanum tuberosum HOM05D004394 ORTHO05D005208 4.8e-40 167.9 123 62.6
BolC5t30836H Brassica oleracea HOM05D004394 ORTHO05D005208 6.2e-40 167.5 127 63.8
Phvul.007G087400 Phaseolus vulgaris HOM05D004394 ORTHO05D005208 8.1e-40 167.2 123 61.8
Haze_22268 Corylus avellana HOM05D004394 ORTHO05D005208 1.1e-39 166.8 123 62.6
THA.LOC104809715 Tarenaya hassleriana HOM05D004394 ORTHO05D005208 1.1e-39 166.8 125 61.6
TPR.G17517 Trifolium pratense HOM05D004394 ORTHO05D005208 1.1e-39 166.8 123 61.8
CiPaw.08G045200 Carya illinoinensis HOM05D004394 ORTHO05D005208 1.4e-39 166.4 121 63.6
Cre12.g512550 Chlamydomonas reinhardtii HOM05D004394 ORTHO05D005208 1.4e-39 166.4 122 63.9
Ca_08121_v3 Cicer arietinum L. HOM05D004394 ORTHO05D005208 1.4e-39 166.4 123 62.6
Oeu012929.1 Olea europaea HOM05D004394 ORTHO05D005208 1.4e-39 166.4 123 61.8
Cfa013636 Carpinus fangiana HOM05D004394 ORTHO05D005208 1.8e-39 166.0 123 61.8
CDE06G0322 Ceratophyllum demersum HOM05D004394 ORTHO05D005208 1.8e-39 166.0 123 63.4
Medtr2g028730 Medicago truncatula HOM05D004394 ORTHO05D005208 1.8e-39 166.0 123 61.8
Nitab4.5_0000232g0200 Nicotiana tabacum HOM05D004394 ORTHO05D005208 1.8e-39 166.0 123 62.6
QL03p027611 Quercus lobata HOM05D004394 ORTHO05D005208 1.8e-39 166.0 123 62.6
Lsat_1_v5_gn_2_108521 Lactuca sativa HOM05D004394 ORTHO05D005208 2.4e-39 165.6 124 62.1
Lalb_Chr11g0065431 Lupinus albus HOM05D004394 ORTHO05D005208 2.4e-39 165.6 123 62.6
Psat2g179880 Pisum sativum HOM05D004394 ORTHO05D005208 2.4e-39 165.6 123 61.8
Sopen04g029330 Solanum pennellii HOM05D004394 ORTHO05D005208 2.4e-39 165.6 123 61.8
MSTRG.25920 Avicennia marina HOM05D004394 ORTHO05D005208 3.1e-39 165.2 123 61.0
MELO3C011026.2 Cucumis melo HOM05D004394 ORTHO05D005208 3.1e-39 165.2 123 60.2
Psat1g170200 Pisum sativum HOM05D004394 ORTHO05D005208 3.1e-39 165.2 123 61.0
Eucgr.D01128 Eucalyptus grandis HOM05D004394 ORTHO05D005208 4.0e-39 164.9 123 62.6
Glyma.20G173300 Glycine max HOM05D004394 ORTHO05D005208 4.0e-39 164.9 123 60.2
TWI12G1259 Tripterygium wilfordii HOM05D004394 ORTHO05D005208 4.0e-39 164.9 124 62.9
BcaC08g47394 Brassica carinata HOM05D004394 ORTHO05D005208 5.3e-39 164.5 123 61.8
Thhalv10009116m.g Eutrema salsugineum HOM05D004394 ORTHO05D005208 5.3e-39 164.5 126 61.9
Glyma.10G218300 Glycine max HOM05D004394 ORTHO05D005208 5.3e-39 164.5 123 61.0
HanXRQChr07g0194691 Helianthus annuus HOM05D004394 ORTHO05D005208 5.3e-39 164.5 124 62.1
CDE02G1736 Ceratophyllum demersum HOM05D004394 ORTHO05D005208 6.9e-39 164.1 123 62.6
Atru.chr13.1186 Acer truncatum HOM05D004394 ORTHO05D005208 9.0e-39 163.7 124 61.3
AUR62027759 Chenopodium quinoa HOM05D004394 ORTHO05D005208 9.0e-39 163.7 123 61.0
CsaV3_2G029680 Cucumis sativus L. HOM05D004394 ORTHO05D005208 9.0e-39 163.7 123 60.2
AT1G78190 Arabidopsis thaliana HOM05D004394 ORTHO05D005208 1.2e-38 163.3 125 63.2
Gohir.A05G267200 Gossypium hirsutum HOM05D004394 ORTHO05D005208 1.5e-38 162.9 125 63.2
Medtr1g050345 Medicago truncatula HOM05D004394 ORTHO05D005208 1.5e-38 162.9 123 60.2
Atru.chr5.2725 Acer truncatum HOM05D004394 ORTHO05D005208 2.0e-38 162.5 124 62.9
Hma1.2p1_0575F.1_g181580 Hydrangea macrophylla HOM05D004394 ORTHO05D005208 2.0e-38 162.5 116 63.8
CARHR071660 Cardamine hirsuta HOM05D004394 ORTHO05D005208 2.6e-38 162.2 125 60.0
HanXRQChr04g0126451 Helianthus annuus HOM05D004394 ORTHO05D005208 2.6e-38 162.2 124 61.3
MD15G1369300 Malus domestica HOM05D004394 ORTHO05D005208 2.6e-38 162.2 116 64.7
VMungo0720G0524 Vigna mungo HOM05D004394 ORTHO05D005208 2.6e-38 162.2 121 59.5
Dinv36547 Davidia involucrata HOM05D004394 ORTHO05D005208 3.4e-38 161.8 121 59.5
C06p52130 Brassica napus HOM05D003496 ORTHO05D003909 5.8e-38 161.0 121 61.2
BolC6t40236H Brassica oleracea HOM05D003496 ORTHO05D003909 5.8e-38 161.0 121 61.2
Cpa.g.sc53.145 Carica papaya HOM05D004394 ORTHO05D005208 5.8e-38 161.0 124 63.7
DCAR_008736 Daucus carota HOM05D004394 ORTHO05D005208 5.8e-38 161.0 124 60.5
Duzib093G0332 Durio zibethinus HOM05D004394 ORTHO05D005208 5.8e-38 161.0 125 63.2
Gohir.D05G268800 Gossypium hirsutum HOM05D004394 ORTHO05D005208 7.6e-38 160.6 125 62.4
Gorai.009G281400 Gossypium raimondii HOM05D004394 ORTHO05D005208 7.6e-38 160.6 125 62.4
BraA07t31861Z Brassica rapa HOM05D003496 ORTHO05D003909 9.9e-38 160.2 121 61.2
Thhalv10019322m.g Eutrema salsugineum HOM05D004394 ORTHO05D005208 9.9e-38 160.2 125 60.8
BcaB03g15991 Brassica carinata HOM05D004394 ORTHO05D005208 1.3e-37 159.8 125 61.6
Duzib093G1861 Durio zibethinus HOM05D004394 ORTHO05D005208 1.3e-37 159.8 125 62.4
Sed0012623 Sechium edule HOM05D004394 ORTHO05D005208 1.3e-37 159.8 123 57.7
Cpa.g.sc36.132 Carica papaya HOM05D004394 ORTHO05D005208 1.7e-37 159.5 124 63.7
Sp5g33330 Schrenkiella parvula HOM05D004394 ORTHO05D005208 1.7e-37 159.5 125 60.8
AL2G38520 Arabidopsis lyrata HOM05D004394 ORTHO05D005208 2.9e-37 158.7 125 59.2
Carub.0002s2509 Capsella rubella HOM05D004394 ORTHO05D005208 2.9e-37 158.7 123 58.5
Phvul.002G138800 Phaseolus vulgaris HOM05D004394 ORTHO05D005208 3.8e-37 158.3 122 58.2
A07p43490 Brassica napus HOM05D003496 ORTHO05D003909 6.4e-37 157.5 121 59.5
TWI36G1364 Tripterygium wilfordii HOM05D004394 ORTHO05D005208 6.4e-37 157.5 124 61.3
AagrBONN_evm.TU.Sc2ySwM_344.4664 Anthoceros agrestis HOM05D004394 ORTHO05D005208 8.4e-37 157.1 123 62.6
COL.COLO4_16398 Corchorus olitorius HOM05D004394 ORTHO05D005208 3.5e-35 151.8 118 62.7
Solyc04g074150.3 Solanum lycopersicum HOM05D004394 ORTHO05D005208 4.6e-35 151.4 116 59.5
BcaB03g14221 Brassica carinata HOM05D004394 ORTHO05D005208 6.0e-35 151.0 113 62.8
EL10Ac1g01214 Beta vulgaris HOM05D004394 ORTHO05D005208 1.3e-34 149.8 116 60.3
CANSAT80G2909 Cannabis sativa HOM05D004394 ORTHO05D005208 3.0e-34 148.7 118 54.2
Haze_00323 Corylus avellana HOM05D004394 ORTHO05D005208 3.0e-34 148.7 123 57.7
CANSAT35G1737 Cannabis sativa HOM05D004394 ORTHO05D005208 3.9e-34 148.3 115 57.4
Rhsim06G0082000 Rhododendron simsii HOM05D004394 ORTHO05D005208 6.7e-34 147.5 121 58.7
SHI20485 Sapria himalayana HOM05D004394 ORTHO05D005208 1.1e-33 146.7 121 57.9
Os07g0623000 Oryza sativa ssp. japonica HOM05D004394 ORTHO05D005208 2.4e-31 139.0 131 51.9
Nn6g33602 Nelumbo nucifera HOM05D004394 ORTHO05D005208 3.1e-31 138.7 116 53.4
Zm00001eb109660 Zea mays HOM05D004394 ORTHO05D005208 1.5e-30 136.3 135 51.1
PRCOL_00005343 Prasinoderma coloniale HOM05D004394 ORTHO05D005208 2.0e-30 136.0 134 53.7
Nn4g22250 Nelumbo nucifera HOM05D004394 ORTHO05D005208 2.6e-30 135.6 109 54.1
MCO01G362 Micromonas commoda HOM05D004394 ORTHO05D005208 2.9e-29 132.1 122 53.3
Cpa.g.sc247.5 Carica papaya HOM05D004394 ORTHO05D005208 6.5e-29 131.0 122 54.1
Nitab4.5_0005777g0070 Nicotiana tabacum HOM05D004394 ORTHO05D005208 8.4e-29 130.6 105 56.2
AUR62038524 Chenopodium quinoa HOM05D004394 ORTHO05D005208 1.1e-25 120.2 87 62.1
Haze_27710 Corylus avellana HOM05D004394 ORTHO05D005208 7.4e-25 117.5 122 50.0
CiPaw.07G180000 Carya illinoinensis HOM05D004394 ORTHO05D005208 2.2e-21 105.9 106 48.1
Cpa.g.sc257.3 Carica papaya HOM05D004394 ORTHO05D005208 8.5e-21 104.0 123 47.2
SEGI_26774 Sequoiadendron giganteum HOM05D004394 ORTHO05D005208 1.2e-19 100.1 63 66.7
Nn8g39569 Nelumbo nucifera HOM05D004394 ORTHO05D005208 6.1e-19 97.8 111 42.3
Cfa016137 Carpinus fangiana HOM05D004394 ORTHO05D005208 1.1e-17 93.6 115 41.7
QL05p087667 Quercus lobata HOM05D004394 ORTHO05D000126 1.5e-14 83.2 68 57.4
Lsat_1_v5_gn_4_16040 Lactuca sativa HOM05D004394 ORTHO05D005208 1.4e-12 76.6 65 52.3
Nn1g03585 Nelumbo nucifera HOM05D004394 ORTHO05D005208 2.3e-10 69.3 53 56.6
HanXRQChr03g0069311 Helianthus annuus HOM05D004394 ORTHO05D005208 5.7e-09 64.7 40 67.5


User provided reference genes

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