Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g44919 Chara braunii HOM05D007992 ORTHO05D010086 2.7e-49 198.4 100 100.0
RcHm_v2.0_Chr7g0220841 Rosa chinensis HOM05D007992 ORTHO05D010086 4.3e-15 84.7 60 61.7
CAN.G798.45 Capsicum annuum HOM05D007992 ORTHO05D010086 8.1e-14 80.5 62 56.5
Prupe.1G576700 Prunus persica HOM05D007992 ORTHO05D010086 8.1e-14 80.5 57 59.6
Eucgr.I02752 Eucalyptus grandis HOM05D007992 ORTHO05D010086 1.8e-13 79.3 56 60.7
HanXRQChr07g0187511 Helianthus annuus HOM05D007992 ORTHO05D010086 2.4e-13 79.0 58 58.6
Oeu045939.1 Olea europaea HOM05D007992 ORTHO05D010086 2.4e-13 79.0 61 57.4
Peaxi162Scf00011g00937 Petunia axillaris HOM05D007992 ORTHO05D010086 3.1e-13 78.6 62 56.5
PGR142G0328 Punica granatum HOM05D007992 ORTHO05D010086 4.0e-13 78.2 58 58.6
arahy.Tifrunner.gnm1.ann1.5LAZ71 Arachis hypogaea HOM05D007992 ORTHO05D010086 6.9e-13 77.4 56 57.1
arahy.Tifrunner.gnm1.ann1.UKT1PL Arachis hypogaea HOM05D007992 ORTHO05D010086 6.9e-13 77.4 56 57.1
Cc02_g22280 Coffea canephora HOM05D007992 ORTHO05D010086 9.0e-13 77.0 61 55.7
CsaV3_3G019300 Cucumis sativus L. HOM05D007992 ORTHO05D010086 9.0e-13 77.0 61 55.7
Migut.B00791 Erythranthe guttata HOM05D007992 ORTHO05D010086 1.2e-12 76.6 61 54.1
Manes.10G120300 Manihot esculenta HOM05D007992 ORTHO05D010086 1.2e-12 76.6 61 54.1
QL02p099856 Quercus lobata HOM05D007992 ORTHO05D010086 1.2e-12 76.6 53 60.4
QL93p0310_0002 Quercus lobata HOM05D007992 ORTHO05D010086 1.2e-12 76.6 53 60.4
CiPaw.05G051500 Carya illinoinensis HOM05D007992 ORTHO05D010086 1.5e-12 76.3 56 55.4
FAN18G3190 Fragaria x ananassa HOM05D007992 ORTHO05D010086 1.5e-12 76.3 54 61.1
Nitab4.5_0000948g0130 Nicotiana tabacum HOM05D007992 ORTHO05D010086 1.5e-12 76.3 62 53.2
Nitab4.5_0002596g0010 Nicotiana tabacum HOM05D007992 ORTHO05D010086 1.5e-12 76.3 62 53.2
PSO782G2589 Papaver somniferum HOM05D007992 ORTHO05D010086 1.5e-12 76.3 62 56.5
AagrBONN_evm.TU.Sc2ySwM_228.5013 Anthoceros agrestis HOM05D007992 ORTHO05D010086 2.6e-12 75.5 60 53.3
FAN04G0058 Fragaria x ananassa HOM05D007992 ORTHO05D010086 2.6e-12 75.5 52 61.5
Lsat_1_v5_gn_7_79260 Lactuca sativa HOM05D007992 ORTHO05D010086 2.6e-12 75.5 58 56.9
MELO3C031671.2 Cucumis melo HOM05D007992 ORTHO05D010086 4.5e-12 74.7 64 51.6
MD15G1432800 Malus domestica HOM05D007992 ORTHO05D010086 7.6e-12 73.9 57 52.6
DCAR_025353 Daucus carota HOM05D007992 ORTHO05D010086 1.3e-11 73.2 57 52.6
Os12g0182600 Oryza sativa ssp. japonica HOM05D007992 ORTHO05D010086 1.7e-11 72.8 61 54.1
Potri.003G009800 Populus trichocarpa HOM05D007992 ORTHO05D010086 1.7e-11 72.8 56 55.4
Zm00001eb138500 Zea mays HOM05D007992 ORTHO05D010086 1.7e-11 72.8 61 55.7
CSS0028556 Camellia sinensis var. sinensis HOM05D007992 ORTHO05D010086 2.2e-11 72.4 54 59.3
Medtr4g134900 Medicago truncatula HOM05D007992 ORTHO05D010086 2.2e-11 72.4 56 55.4
THA.LOC104820254 Tarenaya hassleriana HOM05D007992 ORTHO05D010086 2.2e-11 72.4 61 49.2
Glyma.17G000900 Glycine max HOM05D007992 ORTHO05D010086 3.8e-11 71.6 56 55.4
GSVIVG01023280001 Vitis vinifera HOM05D007992 ORTHO05D010086 4.9e-11 71.2 56 53.6
Phvul.003G074700 Phaseolus vulgaris HOM05D007992 ORTHO05D010086 8.4e-11 70.5 56 53.6
Sed0016814 Sechium edule HOM05D007992 ORTHO05D010086 8.4e-11 70.5 53 56.6
AUR62023424 Chenopodium quinoa HOM05D007992 ORTHO05D010086 1.4e-10 69.7 56 53.6
TWI59G0747 Tripterygium wilfordii HOM05D007992 ORTHO05D010086 1.4e-10 69.7 56 51.8
EL10Ac1g00780 Beta vulgaris HOM05D007992 ORTHO05D010086 1.9e-10 69.3 59 50.8
CANSAT54G2040 Cannabis sativa HOM05D007992 ORTHO05D010086 1.9e-10 69.3 62 48.4
Lj4g0012187 Lotus japonicus HOM05D007992 ORTHO05D010086 3.2e-10 68.6 56 53.6
Pp3c6_8240 Physcomitrium patens HOM05D007992 ORTHO05D010086 4.2e-10 68.2 61 49.2
SalBow7G0224 Salvia bowleyana HOM05D007992 ORTHO05D010086 4.2e-10 68.2 69 44.9
Thhalv10009288m.g Eutrema salsugineum HOM05D007992 ORTHO05D010086 9.3e-10 67.0 61 45.9
SMO367G0246 Selaginella moellendorffii HOM05D007992 ORTHO05D010086 9.3e-10 67.0 55 49.1
AT1G09794 Arabidopsis thaliana HOM05D007992 ORTHO05D010086 1.2e-09 66.6 61 45.9
Carub.0001s0914 Capsella rubella HOM05D007992 ORTHO05D010086 1.2e-09 66.6 61 45.9
CARHR009770 Cardamine hirsuta HOM05D007992 ORTHO05D010086 1.2e-09 66.6 61 45.9
C05p07870 Brassica napus HOM05D007992 ORTHO05D010086 2.1e-09 65.9 61 45.9
BolC5t29538H Brassica oleracea HOM05D007992 ORTHO05D010086 2.1e-09 65.9 61 45.9
Aa31LG1G5180 Aethionema arabicum HOM05D007992 ORTHO05D010086 2.7e-09 65.5 61 45.9
A06p06460 Brassica napus HOM05D007992 ORTHO05D010086 4.6e-09 64.7 61 44.3
BraA06t23857Z Brassica rapa HOM05D007992 ORTHO05D010086 4.6e-09 64.7 61 44.3
Nn5g27747 Nelumbo nucifera HOM05D007992 ORTHO05D010086 6.0e-09 64.3 63 44.4
Lalb_Chr13g0304491 Lupinus albus HOM05D007992 ORTHO05D010086 7.9e-09 63.9 55 52.7
Aqoxy6G00119 Aquilegia oxysepala HOM05D007992 ORTHO05D010086 2.5e-07 58.9 62 45.2
vmacro01727 Vaccinium macrocarpon HOM05D007992 ORTHO05D010086 2.5e-07 58.9 66 42.4


User provided reference genes

Program Settings