Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g44530 Chara braunii HOM05D004337 ORTHO05D005422 0.0e+00 1127.9 789 100.0
THA.LOC104818397 Tarenaya hassleriana HOM05D004337 ORTHO05D005422 3.3e-203 712.6 562 59.6
Manes.12G081000 Manihot esculenta HOM05D004337 ORTHO05D005422 3.7e-202 709.1 562 59.3
arahy.Tifrunner.gnm1.ann1.X1BSDH Arachis hypogaea HOM05D004337 ORTHO05D005422 6.3e-202 708.4 558 60.2
Gohir.A05G375100 Gossypium hirsutum HOM05D004337 ORTHO05D005422 6.3e-202 708.4 562 59.6
Gohir.D04G040600 Gossypium hirsutum HOM05D004337 ORTHO05D005422 6.3e-202 708.4 562 59.6
Gorai.012G045800 Gossypium raimondii HOM05D004337 ORTHO05D005422 6.3e-202 708.4 562 59.6
Sed0025757 Sechium edule HOM05D004337 ORTHO05D005422 8.2e-202 708.0 559 59.6
MELO3C003282.2 Cucumis melo HOM05D004337 ORTHO05D005422 1.1e-201 707.6 558 59.7
CiPaw.15G184900 Carya illinoinensis HOM05D004337 ORTHO05D005422 1.4e-201 707.2 564 58.9
Actinidia36582 Actinidia chinensis HOM05D004337 ORTHO05D005422 7.0e-201 704.9 562 58.9
Prupe.4G286100 Prunus persica HOM05D004337 ORTHO05D005422 1.5e-200 703.7 562 58.5
THA.LOC104819366 Tarenaya hassleriana HOM05D004337 ORTHO05D005422 2.0e-200 703.4 562 58.4
CsaV3_4G030000 Cucumis sativus L. HOM05D004337 ORTHO05D005422 4.5e-200 702.2 558 59.3
GSVIVG01000243001 Vitis vinifera HOM05D004337 ORTHO05D005422 1.0e-199 701.0 592 56.8
MBI06_g32147_MAGBIO Magnolia biondii HOM05D004337 ORTHO05D005422 1.7e-199 700.3 559 58.5
Eucgr.I00018 Eucalyptus grandis HOM05D004337 ORTHO05D005422 3.8e-199 699.1 558 58.4
EL10Ac4g09743 Beta vulgaris HOM05D004337 ORTHO05D005422 5.0e-199 698.7 563 59.3
PGR119G0424 Punica granatum HOM05D004337 ORTHO05D005422 5.0e-199 698.7 560 58.6
Gorai.008G001400 Gossypium raimondii HOM05D004337 ORTHO05D005422 8.5e-199 698.0 562 58.4
MD15G1140200 Malus domestica HOM05D004337 ORTHO05D005422 8.5e-199 698.0 596 56.0
Gohir.A12G002300 Gossypium hirsutum HOM05D004337 ORTHO05D005422 1.1e-198 697.6 562 58.4
Aqoxy5G01850 Aquilegia oxysepala HOM05D004337 ORTHO05D005422 1.4e-198 697.2 566 58.5
Potri.004G134500 Populus trichocarpa HOM05D004337 ORTHO05D005422 1.9e-198 696.8 591 56.5
Sabra04G0083600 Salix brachista HOM05D004337 ORTHO05D005422 4.2e-198 695.7 591 56.3
Thecc.01G146600 Theobroma cacao HOM05D004337 ORTHO05D005422 4.2e-198 695.7 562 58.2
Phvul.009G159800 Phaseolus vulgaris HOM05D004337 ORTHO05D005422 5.5e-198 695.3 559 59.7
VMungo1309G0234 Vigna mungo HOM05D004337 ORTHO05D005422 5.5e-198 695.3 559 58.3
Sc16g0009860 Simmondsia chinensis HOM05D004337 ORTHO05D005422 9.4e-198 694.5 563 58.8
QL10p037473 Quercus lobata HOM05D004337 ORTHO05D005422 1.2e-197 694.1 564 57.6
Dinv09624 Davidia involucrata HOM05D004337 ORTHO05D005422 1.6e-197 693.7 566 58.5
Hma1.2p1_0296F.1_g116900 Hydrangea macrophylla HOM05D004337 ORTHO05D005422 1.6e-197 693.7 563 58.8
AUR62006971 Chenopodium quinoa HOM05D004337 ORTHO05D005422 2.1e-197 693.3 574 58.0
Potri.T045800 Populus trichocarpa HOM05D004337 ORTHO05D005422 2.1e-197 693.3 563 58.3
Lj1g0000957 Lotus japonicus HOM05D004337 ORTHO05D005422 2.7e-197 693.0 559 58.1
Actinidia19947 Actinidia chinensis HOM05D004337 ORTHO05D005422 3.6e-197 692.6 562 58.9
Psat5g057120 Pisum sativum HOM05D004337 ORTHO05D005422 4.7e-197 692.2 560 59.1
AUR62000615 Chenopodium quinoa HOM05D004337 ORTHO05D005422 6.1e-197 691.8 574 57.8
Potri.018G137500 Populus trichocarpa HOM05D004337 ORTHO05D005422 6.1e-197 691.8 563 58.1
Atru.chr3.1466 Acer truncatum HOM05D004337 ORTHO05D005422 1.8e-196 690.3 562 56.8
TAR376G0777 Trochodendron aralioides HOM05D004337 ORTHO05D005422 1.8e-196 690.3 566 57.2
Hund21761 Selenicereus undatus HOM05D004337 ORTHO05D005422 3.0e-196 689.5 566 58.5
Glyma.04G203800 Glycine max HOM05D004337 ORTHO05D005422 3.9e-196 689.1 559 58.0
Zm00001eb422980 Zea mays HOM05D004337 ORTHO05D005422 3.9e-196 689.1 563 57.7
MSTRG.23236 Avicennia marina HOM05D004337 ORTHO05D005422 8.8e-196 688.0 560 58.2
Cfa020919 Carpinus fangiana HOM05D004337 ORTHO05D005422 8.8e-196 688.0 561 58.3
Glyma.06G161400 Glycine max HOM05D004337 ORTHO05D005422 1.5e-195 687.2 559 59.6
SMO116G0204 Selaginella moellendorffii HOM05D004337 ORTHO05D005422 1.5e-195 687.2 560 58.9
Zm00001eb082160 Zea mays HOM05D004337 ORTHO05D005422 1.5e-195 687.2 599 55.4
COL.COLO4_33529 Corchorus olitorius HOM05D004337 ORTHO05D005422 2.0e-195 686.8 580 57.1
Mapoly0020s0073 Marchantia polymorpha HOM05D004337 ORTHO05D005422 2.6e-195 686.4 600 57.3
Oeu054207.1 Olea europaea HOM05D004337 ORTHO05D005422 2.6e-195 686.4 571 57.3
Os04g0441900 Oryza sativa ssp. japonica HOM05D004337 ORTHO05D005422 3.3e-195 686.0 563 57.7
CANSAT54G2432 Cannabis sativa HOM05D004337 ORTHO05D005422 4.4e-195 685.6 566 57.1
Migut.H02542 Erythranthe guttata HOM05D004337 ORTHO05D005422 7.4e-195 684.9 558 58.2
Oeu046358.1 Olea europaea HOM05D004337 ORTHO05D005422 7.4e-195 684.9 565 57.5
Medtr3g098210 Medicago truncatula HOM05D004337 ORTHO05D005422 9.7e-195 684.5 563 57.7
Nitab4.5_0000496g0240 Nicotiana tabacum HOM05D004337 ORTHO05D005422 1.3e-194 684.1 566 58.1
Thhalv10013045m.g Eutrema salsugineum HOM05D004337 ORTHO05D005422 1.7e-194 683.7 566 58.5
TPR.G7800 Trifolium pratense HOM05D004337 ORTHO05D005422 2.2e-194 683.3 560 57.7
Thhalv10003872m.g Eutrema salsugineum HOM05D004337 ORTHO05D005422 2.8e-194 682.9 566 58.0
Aa31LG11G2980 Aethionema arabicum HOM05D004337 ORTHO05D005422 3.7e-194 682.6 563 57.9
Lsat_1_v5_gn_2_40441 Lactuca sativa HOM05D004337 ORTHO05D005422 3.7e-194 682.6 564 58.2
ATR1089G072 Amborella trichopoda HOM05D004337 ORTHO05D005422 4.8e-194 682.2 562 58.9
BcaB04g19858 Brassica carinata HOM05D004337 ORTHO05D005422 1.1e-193 681.0 566 58.0
CARHR189960 Cardamine hirsuta HOM05D004337 ORTHO05D005422 1.1e-193 681.0 566 58.3
unitig_736.g22365 Utricularia gibba HOM05D004337 ORTHO05D005422 1.1e-193 681.0 570 57.2
BcaC04g23504 Brassica carinata HOM05D004337 ORTHO05D005422 1.4e-193 680.6 566 58.0
BolC9t53677H Brassica oleracea HOM05D004337 ORTHO05D005422 1.4e-193 680.6 566 58.0
CAN.G1156.26 Capsicum annuum HOM05D004337 ORTHO05D005422 1.4e-193 680.6 563 58.3
Ciclev10025224m.g Citrus clementina HOM05D004337 ORTHO05D005422 1.4e-193 680.6 564 57.1
C09p07600 Brassica napus HOM05D004337 ORTHO05D005422 4.1e-193 679.1 566 57.8
BraA09t36334Z Brassica rapa HOM05D004337 ORTHO05D005422 4.1e-193 679.1 566 57.8
Sp2g23620 Schrenkiella parvula HOM05D004337 ORTHO05D005422 4.1e-193 679.1 566 57.4
Peaxi162Scf00353g00735 Petunia axillaris HOM05D004337 ORTHO05D005422 7.0e-193 678.3 567 57.8
AL6G19170 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 1.2e-192 677.6 566 58.1
Solyc05g056350.3 Solanum lycopersicum HOM05D004337 ORTHO05D005422 1.2e-192 677.6 562 58.0
Carub.0006s2135 Capsella rubella HOM05D004337 ORTHO05D005422 1.6e-192 677.2 566 57.2
HPP92_009218 Vanilla planifolia HOM05D004337 ORTHO05D005422 1.6e-192 677.2 559 58.0
AL6G34865 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 2.0e-192 676.8 566 57.8
A06p34530 Brassica napus HOM05D004337 ORTHO05D005422 2.0e-192 676.8 563 57.7
BraA06t26382Z Brassica rapa HOM05D004337 ORTHO05D005422 2.0e-192 676.8 563 57.7
Sopen05g034740 Solanum pennellii HOM05D004337 ORTHO05D005422 2.0e-192 676.8 562 57.8
CARHR204490 Cardamine hirsuta HOM05D004337 ORTHO05D005422 2.6e-192 676.4 566 57.8
Oeu017633.3 Olea europaea HOM05D004337 ORTHO05D005422 2.6e-192 676.4 560 57.1
C07p43970 Brassica napus HOM05D004337 ORTHO05D005422 3.5e-192 676.0 563 57.5
PGSC0003DMG400023451 Solanum tuberosum HOM05D004337 ORTHO05D005422 3.5e-192 676.0 562 58.0
FAN19G0301 Fragaria x ananassa HOM05D004337 ORTHO05D005422 4.5e-192 675.6 561 57.0
Carub.0006s0742 Capsella rubella HOM05D004337 ORTHO05D005422 5.9e-192 675.2 566 57.8
FAN28G1720 Fragaria x ananassa HOM05D004337 ORTHO05D005422 5.9e-192 675.2 561 57.0
TWI75G1462 Tripterygium wilfordii HOM05D004337 ORTHO05D005422 5.9e-192 675.2 559 56.9
Lalb_Chr07g0183961 Lupinus albus HOM05D004337 ORTHO05D005422 1.0e-191 674.5 567 57.7
A09p06870 Brassica napus HOM05D004337 ORTHO05D005422 1.3e-191 674.1 566 57.2
FAN23G1824 Fragaria x ananassa HOM05D004337 ORTHO05D005422 1.7e-191 673.7 561 56.9
BolC7t44925H Brassica oleracea HOM05D004337 ORTHO05D005422 2.2e-191 673.3 563 57.4
Lalb_Chr12g0202711 Lupinus albus HOM05D004337 ORTHO05D005422 2.2e-191 673.3 567 57.3
RcHm_v2.0_Chr3g0484771 Rosa chinensis HOM05D004337 ORTHO05D005422 2.2e-191 673.3 560 57.0
BraA10t44874Z Brassica rapa HOM05D004337 ORTHO05D005422 2.9e-191 672.9 567 57.3
Ca_17042_v3 Cicer arietinum L. HOM05D004337 ORTHO05D005422 2.9e-191 672.9 560 59.8
BolC9t59595H Brassica oleracea HOM05D004337 ORTHO05D005422 3.8e-191 672.5 567 57.3
AT5G23575 Arabidopsis thaliana HOM05D004337 ORTHO05D005422 6.5e-191 671.8 566 56.9
C09p68510 Brassica napus HOM05D004337 ORTHO05D005422 8.5e-191 671.4 567 57.3
HanXRQChr10g0285831 Helianthus annuus HOM05D004337 ORTHO05D005422 1.1e-190 671.0 539 59.2
PSO210G2848 Papaver somniferum HOM05D004337 ORTHO05D005422 1.5e-190 670.6 582 56.4
FAN26G1467 Fragaria x ananassa HOM05D004337 ORTHO05D005422 1.9e-190 670.2 561 56.5
BcaB08g37252 Brassica carinata HOM05D004337 ORTHO05D005422 2.5e-190 669.8 568 57.7
Nitab4.5_0004764g0030 Nicotiana tabacum HOM05D004337 ORTHO05D005422 2.5e-190 669.8 566 57.6
PSO761G0180 Papaver somniferum HOM05D004337 ORTHO05D005422 2.5e-190 669.8 565 57.3
FvH4_1g25770 Fragaria vesca HOM05D004337 ORTHO05D005422 5.5e-190 668.7 561 56.5
arahy.Tifrunner.gnm1.ann1.397MFZ Arachis hypogaea HOM05D004337 ORTHO05D005422 9.4e-190 667.9 599 55.3
A10p28250 Brassica napus HOM05D004337 ORTHO05D005422 1.2e-189 667.5 567 57.1
SGA_v2.0_scaffold12G06278 Striga asiatica HOM05D004337 ORTHO05D005422 2.7e-189 666.4 584 56.8
ECA238G0122 Erigeron canadensis HOM05D004337 ORTHO05D005422 4.0e-188 662.5 571 55.3
Lj4A821G42 Lonicera japonica HOM05D004337 ORTHO05D005422 2.6e-187 659.8 565 56.1
Aa31LG3G18040 Aethionema arabicum HOM05D004337 ORTHO05D005422 4.8e-186 655.6 565 57.0
AT5G08500 Arabidopsis thaliana HOM05D004337 ORTHO05D005422 1.1e-182 644.4 521 59.5
Rhsim10G0124700 Rhododendron simsii HOM05D004337 ORTHO05D005422 1.5e-182 644.0 662 49.2
SGA_v2.0_scaffold51G18842 Striga asiatica HOM05D004337 ORTHO05D005422 4.2e-182 642.5 563 57.4
Nn5g27210 Nelumbo nucifera HOM05D004337 ORTHO05D005422 3.6e-181 639.4 531 56.9
Dinv10851 Davidia involucrata HOM05D004337 ORTHO05D005422 1.4e-180 637.5 521 58.3
DCAR_009619 Daucus carota HOM05D004337 ORTHO05D005422 1.1e-177 627.9 596 52.7
CSS0021638 Camellia sinensis var. sinensis HOM05D004337 ORTHO05D005422 1.1e-174 617.8 493 62.5
Sp6g34400 Schrenkiella parvula HOM05D004337 ORTHO05D005422 1.9e-174 617.1 567 54.7
Peaxi162Scf00651g00114 Petunia axillaris HOM05D004337 ORTHO05D005422 1.6e-173 614.0 593 52.4
Pp3c5_10010 Physcomitrium patens HOM05D004337 ORTHO05D005422 2.6e-171 606.7 584 52.7
AL6G18970 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 4.3e-158 562.8 860 38.5
vmacro12739 Vaccinium macrocarpon HOM05D004337 ORTHO05D005422 5.8e-155 552.4 893 36.5
Cc00_g00820 Coffea canephora HOM05D004337 ORTHO05D005422 1.6e-152 544.3 368 68.5
Ah.06g188230 Amaranthus hybridus HOM05D004337 ORTHO05D005422 2.1e-149 533.9 528 51.5
CDE05G2996 Ceratophyllum demersum HOM05D004337 ORTHO05D005422 3.2e-145 520.0 441 55.1
Cre09.g397900 Chlamydomonas reinhardtii HOM05D004337 ORTHO05D005422 5.1e-143 512.7 530 48.9
Gohir.D12G002000 Gossypium hirsutum HOM05D004337 ORTHO05D005422 2.1e-141 507.3 564 45.9
Duzib264G1201 Durio zibethinus HOM05D004337 ORTHO05D005422 3.4e-139 500.0 563 45.8
Haze_19353 Corylus avellana HOM05D004337 ORTHO05D005422 6.4e-130 469.2 320 68.8
AL6G18990 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 3.5e-120 436.8 366 59.0
SHI38349 Sapria himalayana HOM05D004337 ORTHO05D005422 1.2e-115 421.8 400 53.8
MCO10G243 Micromonas commoda HOM05D004337 ORTHO05D005422 4.3e-110 403.3 331 58.9
ClCG04G002690 Citrullus lanatus HOM05D004337 ORTHO05D005422 2.7e-104 384.0 284 64.1
AL6G19200 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 2.0e-99 367.9 378 53.4
Haze_27034 Corylus avellana HOM05D004337 ORTHO05D005422 5.0e-98 363.2 377 47.7
PRCOL_00006172 Prasinoderma coloniale HOM05D004337 ORTHO05D005422 2.2e-85 321.2 411 42.3
Cfa024513 Carpinus fangiana HOM05D004337 ORTHO05D005422 3.7e-85 320.5 555 34.2
MCO07G426 Micromonas commoda HOM05D004337 ORTHO05D005422 9.8e-62 242.7 379 36.7
Cpa.g.sc3593.1 Carica papaya HOM05D004337 ORTHO05D005422 4.8e-61 240.4 167 64.1
Cpa.g.sc138.38 Carica papaya HOM05D004337 ORTHO05D005422 2.0e-54 218.4 226 45.1
PRCOL_00005640 Prasinoderma coloniale HOM05D004337 ORTHO05D005422 4.9e-53 213.8 365 31.2
Haze_19352 Corylus avellana HOM05D004337 ORTHO05D005422 2.1e-48 198.4 214 45.3
ClCG04G002680 Citrullus lanatus HOM05D004337 ORTHO05D005422 3.6e-48 197.6 147 60.5
AL6G19020 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 1.8e-47 195.3 178 50.6
SalBow8G1257 Salvia bowleyana HOM05D004337 ORTHO05D005422 5.8e-46 190.3 224 51.3
SalBow8G3722 Salvia bowleyana HOM05D004337 ORTHO05D005422 5.8e-46 190.3 224 51.3
Cc00_g00810 Coffea canephora HOM05D004337 ORTHO05D005422 3.9e-42 177.6 146 55.5
CDE05G3583 Ceratophyllum demersum HOM05D004337 ORTHO05D005422 1.9e-41 175.3 88 93.2
HPP92_009290 Vanilla planifolia HOM05D004337 ORTHO05D005422 1.4e-31 142.5 110 57.3
Hma1.2p1_0641F.1_g194250 Hydrangea macrophylla HOM05D004337 ORTHO05D005422 2.1e-24 118.6 72 72.2
Psat3g077400 Pisum sativum HOM05D004337 ORTHO05D005422 2.3e-18 98.6 131 42.7
BcaC04g21668 Brassica carinata HOM05D004337 ORTHO05D021976 1.1e-15 89.7 68 57.4
C09p29160 Brassica napus HOM05D004337 ORTHO05D021976 1.1e-15 89.7 68 57.4
Hma1.2p1_0641F.1_g194230 Hydrangea macrophylla HOM05D004337 ORTHO05D005422 3.1e-15 88.2 83 56.6
SEGI_12766 Sequoiadendron giganteum HOM05D004337 ORTHO05D005422 6.9e-15 87.0 62 67.7
AUR62044487 Chenopodium quinoa HOM05D004337 ORTHO05D021976 6.9e-07 60.5 49 51.0
AUR62044516 Chenopodium quinoa HOM05D004337 ORTHO05D021976 6.9e-07 60.5 49 51.0
SHI11402 Sapria himalayana HOM05D000039 ORTHO05D006865 9.9e-06 56.6 48 50.0


User provided reference genes

Program Settings