Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g44525 Chara braunii HOM05D007261 ORTHO05D009163 2.1e-261 905.2 482 100.0
Pp3c19_21680 Physcomitrium patens HOM05D007261 ORTHO05D009163 1.1e-50 205.3 279 40.9
SMO351G0136 Selaginella moellendorffii HOM05D007261 ORTHO05D009163 1.2e-49 201.8 210 47.1
Hma1.2p1_0738F.1_g210990 Hydrangea macrophylla HOM05D007261 ORTHO05D009163 2.2e-48 197.6 249 45.4
AagrBONN_evm.TU.Sc2ySwM_228.5286 Anthoceros agrestis HOM05D007261 ORTHO05D009163 6.4e-48 196.1 233 44.6
PGR119G1620 Punica granatum HOM05D007261 ORTHO05D009163 1.1e-47 195.3 253 44.7
PSO478G2703 Papaver somniferum HOM05D007261 ORTHO05D009163 4.2e-47 193.4 245 42.4
MELO3C026753.2 Cucumis melo HOM05D007261 ORTHO05D009163 5.4e-47 193.0 265 43.4
CAN.G624.13 Capsicum annuum HOM05D007261 ORTHO05D009163 7.1e-47 192.6 218 48.2
AUR62003485 Chenopodium quinoa HOM05D007261 ORTHO05D009163 1.6e-46 191.4 237 45.1
CsaV3_3G043490 Cucumis sativus L. HOM05D007261 ORTHO05D009163 1.6e-46 191.4 263 43.3
CANSAT01G0240 Cannabis sativa HOM05D007261 ORTHO05D009163 2.1e-46 191.0 219 46.1
Ah.03g147240 Amaranthus hybridus HOM05D007261 ORTHO05D009163 3.5e-46 190.3 256 41.8
HanXRQChr06g0175371 Helianthus annuus HOM05D007261 ORTHO05D009163 3.5e-46 190.3 245 44.1
Mapoly0073s0041 Marchantia polymorpha HOM05D007261 ORTHO05D009163 3.5e-46 190.3 277 39.0
Rhsim12G0015700 Rhododendron simsii HOM05D007261 ORTHO05D009163 3.5e-46 190.3 243 44.9
FvH4_4g22120 Fragaria vesca HOM05D007261 ORTHO05D009163 4.6e-46 189.9 234 44.0
vmacro01006 Vaccinium macrocarpon HOM05D007261 ORTHO05D009163 6.0e-46 189.5 261 43.3
Prupe.1G211100 Prunus persica HOM05D007261 ORTHO05D009163 7.8e-46 189.1 198 50.0
AUR62017794 Chenopodium quinoa HOM05D007261 ORTHO05D009163 1.0e-45 188.7 237 44.7
FAN12G3746 Fragaria x ananassa HOM05D007261 ORTHO05D009163 1.0e-45 188.7 234 43.6
Peaxi162Scf01167g00120 Petunia axillaris HOM05D007261 ORTHO05D009163 1.0e-45 188.7 238 44.1
QL03p048277 Quercus lobata HOM05D007261 ORTHO05D009163 1.0e-45 188.7 232 44.0
Dinv04437 Davidia involucrata HOM05D007261 ORTHO05D009163 1.3e-45 188.3 255 43.9
SEGI_21849 Sequoiadendron giganteum HOM05D007261 ORTHO05D009163 1.3e-45 188.3 186 48.4
FAN07G0598 Fragaria x ananassa HOM05D007261 ORTHO05D009163 2.3e-45 187.6 234 43.6
FAN17G2458 Fragaria x ananassa HOM05D007261 ORTHO05D009163 3.0e-45 187.2 248 41.5
Nitab4.5_0005286g0010 Nicotiana tabacum HOM05D007261 ORTHO05D009163 3.0e-45 187.2 235 43.8
Os11g0537300 Oryza sativa ssp. japonica HOM05D007261 ORTHO05D009163 3.9e-45 186.8 236 44.1
Hund12712 Selenicereus undatus HOM05D007261 ORTHO05D009163 3.9e-45 186.8 237 43.5
Solyc11g040130.2 Solanum lycopersicum HOM05D007261 ORTHO05D009163 3.9e-45 186.8 238 44.5
Gorai.007G068700 Gossypium raimondii HOM05D007261 ORTHO05D009163 5.1e-45 186.4 243 42.8
EL10Ac6g15388 Beta vulgaris HOM05D007261 ORTHO05D009163 6.6e-45 186.0 234 43.6
Migut.K01136 Erythranthe guttata HOM05D007261 ORTHO05D009163 6.6e-45 186.0 245 41.6
MD13G1134400 Malus domestica HOM05D007261 ORTHO05D009163 6.6e-45 186.0 234 44.4
RcHm_v2.0_Chr4g0428371 Rosa chinensis HOM05D007261 ORTHO05D009163 6.6e-45 186.0 234 44.0
Sabra01G0049700 Salix brachista HOM05D007261 ORTHO05D009163 6.6e-45 186.0 231 45.5
Zm00001eb197910 Zea mays HOM05D007261 ORTHO05D009163 6.6e-45 186.0 248 42.7
Duzib264G0686 Durio zibethinus HOM05D007261 ORTHO05D009163 8.7e-45 185.7 247 43.7
Gohir.D11G063500 Gossypium hirsutum HOM05D007261 ORTHO05D009163 8.7e-45 185.7 243 42.4
Thecc.01G239300 Theobroma cacao HOM05D007261 ORTHO05D009163 8.7e-45 185.7 216 44.4
Sed0025955 Sechium edule HOM05D007261 ORTHO05D009163 1.1e-44 185.3 261 41.4
Manes.09G172600 Manihot esculenta HOM05D007261 ORTHO05D009163 1.5e-44 184.9 224 44.6
PSO017G6922 Papaver somniferum HOM05D007261 ORTHO05D009163 1.5e-44 184.9 241 41.1
Gohir.A11G059400 Gossypium hirsutum HOM05D007261 ORTHO05D009163 1.9e-44 184.5 243 42.4
MD16G1145000 Malus domestica HOM05D007261 ORTHO05D009163 1.9e-44 184.5 247 43.3
CSS0041929 Camellia sinensis var. sinensis HOM05D007261 ORTHO05D009163 2.5e-44 184.1 248 43.1
ClCG10G013090 Citrullus lanatus HOM05D007261 ORTHO05D009163 2.5e-44 184.1 265 41.1
Cc11_g14850 Coffea canephora HOM05D007261 ORTHO05D009163 3.3e-44 183.7 198 48.5
CSS0010700 Camellia sinensis var. sinensis HOM05D007261 ORTHO05D009163 4.3e-44 183.3 248 42.7
Cfa009475 Carpinus fangiana HOM05D007261 ORTHO05D009163 5.6e-44 183.0 232 44.8
unitig_26.g10437 Utricularia gibba HOM05D000361 ORTHO05D007482 5.6e-44 183.0 234 41.0
Oeu021934.1 Olea europaea HOM05D007261 ORTHO05D009163 7.3e-44 182.6 218 45.0
PGSC0003DMG400002189 Solanum tuberosum HOM05D007261 ORTHO05D009163 7.3e-44 182.6 218 46.8
CARHR036160 Cardamine hirsuta HOM05D007261 ORTHO05D009163 9.6e-44 182.2 239 42.3
Lsat_1_v5_gn_3_33201 Lactuca sativa HOM05D007261 ORTHO05D009163 9.6e-44 182.2 251 43.4
Aqoxy5G04229 Aquilegia oxysepala HOM05D007261 ORTHO05D009163 1.3e-43 181.8 245 40.4
BolC6t35245H Brassica oleracea HOM05D007261 ORTHO05D009163 1.3e-43 181.8 237 43.0
TWI36G0866 Tripterygium wilfordii HOM05D007261 ORTHO05D009163 1.3e-43 181.8 245 42.0
Aa31LG7G10040 Aethionema arabicum HOM05D007261 ORTHO05D009163 1.6e-43 181.4 270 40.4
arahy.Tifrunner.gnm1.ann1.EWZS38 Arachis hypogaea HOM05D007261 ORTHO05D009163 1.6e-43 181.4 257 44.0
arahy.Tifrunner.gnm1.ann1.X3R9N8 Arachis hypogaea HOM05D007261 ORTHO05D009163 1.6e-43 181.4 257 44.0
BcaB07g33898 Brassica carinata HOM05D007261 ORTHO05D009163 1.6e-43 181.4 230 42.6
C06p01120 Brassica napus HOM05D007261 ORTHO05D009163 1.6e-43 181.4 237 43.0
Ciclev10029098m.g Citrus clementina HOM05D007261 ORTHO05D009163 1.6e-43 181.4 236 40.7
ECA246G1741 Erigeron canadensis HOM05D007261 ORTHO05D009163 1.6e-43 181.4 246 41.5
Cpa.g.sc38.54 Carica papaya HOM05D007261 ORTHO05D009163 2.1e-43 181.0 245 40.0
THA.LOC104801410 Tarenaya hassleriana HOM05D007261 ORTHO05D009163 2.1e-43 181.0 267 40.1
TWI18G1332 Tripterygium wilfordii HOM05D007261 ORTHO05D009163 2.1e-43 181.0 235 42.6
ATR0582G128 Amborella trichopoda HOM05D007261 ORTHO05D009163 3.6e-43 180.3 244 40.2
AL1G52610 Arabidopsis lyrata HOM05D007261 ORTHO05D009163 3.6e-43 180.3 239 42.3
Ca_04086_v3 Cicer arietinum L. HOM05D007261 ORTHO05D009163 3.6e-43 180.3 236 43.2
Lj3A1078G18 Lonicera japonica HOM05D007261 ORTHO05D009163 3.6e-43 180.3 216 44.4
Eucgr.J01661 Eucalyptus grandis HOM05D007261 ORTHO05D009163 4.8e-43 179.9 260 39.2
Nn4g22065 Nelumbo nucifera HOM05D007261 ORTHO05D009163 4.8e-43 179.9 237 43.9
Potri.001G070800 Populus trichocarpa HOM05D007261 ORTHO05D009163 4.8e-43 179.9 238 42.4
Sc17g0001500 Simmondsia chinensis HOM05D007261 ORTHO05D009163 4.8e-43 179.9 183 51.9
BraA10t42964Z Brassica rapa HOM05D007261 ORTHO05D009163 6.2e-43 179.5 235 42.1
Thhalv10011722m.g Eutrema salsugineum HOM05D007261 ORTHO05D009163 8.1e-43 179.1 236 41.9
TPR.G9720 Trifolium pratense HOM05D007261 ORTHO05D009163 8.1e-43 179.1 217 44.2
HPP92_020118 Vanilla planifolia HOM05D007261 ORTHO05D009163 1.1e-42 178.7 184 50.5
A10p07140 Brassica napus HOM05D007261 ORTHO05D009163 1.4e-42 178.3 235 42.1
Sopen11g017340 Solanum pennellii HOM05D007261 ORTHO05D009163 1.4e-42 178.3 238 43.3
Lj1g0023925 Lotus japonicus HOM05D007261 ORTHO05D009163 2.4e-42 177.6 239 41.8
Psat3g206640 Pisum sativum HOM05D007261 ORTHO05D009163 4.0e-42 176.8 238 42.4
AT1G44960 Arabidopsis thaliana HOM05D007261 ORTHO05D009163 5.3e-42 176.4 239 41.4
Carub.0001s3543 Capsella rubella HOM05D007261 ORTHO05D009163 5.3e-42 176.4 274 38.7
Sp1g33800 Schrenkiella parvula HOM05D007261 ORTHO05D009163 5.3e-42 176.4 236 41.1
Medtr7g006790 Medicago truncatula HOM05D007261 ORTHO05D009163 1.2e-41 175.3 242 42.6
Medtr7g006800 Medicago truncatula HOM05D007261 ORTHO05D009163 1.2e-41 175.3 242 42.6
Glyma.18G298600 Glycine max HOM05D007261 ORTHO05D009163 2.0e-41 174.5 235 43.8
Atru.chr12.1480 Acer truncatum HOM05D007261 ORTHO05D009163 3.4e-41 173.7 236 41.1
TAR629G2200 Trochodendron aralioides HOM05D007261 ORTHO05D009163 4.4e-41 173.3 237 42.2
Glyma.08G363400 Glycine max HOM05D007261 ORTHO05D009163 9.9e-41 172.2 235 43.0
GSVIVG01001121001 Vitis vinifera HOM05D007261 ORTHO05D009163 1.3e-40 171.8 217 43.3
SalBow2G2703 Salvia bowleyana HOM05D007261 ORTHO05D009163 1.7e-40 171.4 278 39.6
VMungo1383G1401 Vigna mungo HOM05D007261 ORTHO05D009163 3.8e-40 170.2 182 49.5
Phvul.008G004000 Phaseolus vulgaris HOM05D007261 ORTHO05D009163 6.4e-40 169.5 218 42.2
CDE05G0176 Ceratophyllum demersum HOM05D007261 ORTHO05D009163 1.1e-39 168.7 228 41.7
Lalb_Chr04g0257321 Lupinus albus HOM05D007261 ORTHO05D009163 5.4e-39 166.4 233 40.8
HPP92_020128 Vanilla planifolia HOM05D007261 ORTHO05D009163 6.2e-27 126.3 147 44.9
Haze_12532 Corylus avellana HOM05D007261 ORTHO05D009163 9.0e-26 122.5 374 27.8
Nitab4.5_0002113g0010 Nicotiana tabacum HOM05D000361 ORTHO05D007482 5.5e-23 113.2 126 47.6
PRCOL_00004129 Prasinoderma coloniale HOM05D007261 ORTHO05D009163 9.3e-23 112.5 175 40.0
BcaC08g42890 Brassica carinata HOM05D007261 ORTHO05D009163 1.2e-22 112.1 136 43.4
CiPaw.05G097700 Carya illinoinensis HOM05D007261 ORTHO05D009163 2.7e-22 110.9 235 33.2
Potri.003G159901 Populus trichocarpa HOM05D007261 ORTHO05D009163 2.1e-19 101.3 98 48.0
Actinidia30573 Actinidia chinensis HOM05D007261 ORTHO05D009163 8.2e-19 99.4 111 42.3
CDE05G1764 Ceratophyllum demersum HOM05D007261 ORTHO05D009163 3.9e-13 80.5 112 38.4
PRCOL_00001953 Prasinoderma coloniale HOM05D005243 ORTHO05D006670 3.8e-08 63.9 176 28.4
Cre06.g262000 Chlamydomonas reinhardtii HOM05D001530 ORTHO05D003676 6.5e-08 63.2 294 25.9
Hund16799 Selenicereus undatus HOM05D001833 ORTHO05D001776 7.9e-06 56.2 128 33.6


User provided reference genes

Program Settings