Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g44444 Chara braunii HOM05D003460 ORTHO05D004277 0.0e+00 4608.1 2368 100.0
Mapoly0018s0023 Marchantia polymorpha HOM05D003460 ORTHO05D004277 1.8e-236 824.7 2484 30.7
MapolyY_A0045 Marchantia polymorpha HOM05D003460 ORTHO05D004277 4.9e-234 816.6 2478 31.5
Pp3c8_17600 Physcomitrium patens HOM05D003460 ORTHO05D004277 2.6e-211 741.1 2466 29.0
Pp3c24_11620 Physcomitrium patens HOM05D003460 ORTHO05D004277 7.2e-209 733.0 2452 28.7
SMO147G0395 Selaginella moellendorffii HOM05D003460 ORTHO05D004277 8.8e-199 699.5 2410 29.4
SEGI_03490 Sequoiadendron giganteum HOM05D003460 ORTHO05D004277 1.3e-194 685.6 2481 28.7
ATR0680G344 Amborella trichopoda HOM05D003460 ORTHO05D004277 4.5e-187 660.6 2473 29.3
CBR_g34865 Chara braunii HOM05D003460 ORTHO05D004277 5.9e-187 660.2 671 60.2
Zm00001eb404370 Zea mays HOM05D003460 ORTHO05D004277 5.7e-182 643.7 2456 27.8
Aqoxy7G00308 Aquilegia oxysepala HOM05D003460 ORTHO05D004277 3.7e-181 641.0 2466 29.2
vmacro13290 Vaccinium macrocarpon HOM05D003460 ORTHO05D004277 1.1e-180 639.4 2428 28.2
Nn6g33423 Nelumbo nucifera HOM05D003460 ORTHO05D004277 2.4e-180 638.3 2461 27.3
FAN03G0059 Fragaria x ananassa HOM05D003460 ORTHO05D004277 3.1e-180 637.9 2468 27.9
PSO782G4956 Papaver somniferum HOM05D003460 ORTHO05D004277 3.1e-180 637.9 2540 27.8
Actinidia20904 Actinidia chinensis HOM05D003460 ORTHO05D004277 2.0e-179 635.2 2462 28.3
TAR629G2967 Trochodendron aralioides HOM05D003460 ORTHO05D004277 5.9e-179 633.6 2453 27.9
CSS0010662 Camellia sinensis var. sinensis HOM05D003460 ORTHO05D004277 7.7e-179 633.3 2456 28.0
Rhsim07G0015100 Rhododendron simsii HOM05D003460 ORTHO05D004277 1.7e-178 632.1 2459 28.2
CANSAT56G1950 Cannabis sativa HOM05D003460 ORTHO05D004277 2.5e-177 628.2 2492 27.9
RcHm_v2.0_Chr1g0355261 Rosa chinensis HOM05D003460 ORTHO05D004277 7.2e-177 626.7 2476 27.8
FAN01G0910 Fragaria x ananassa HOM05D003460 ORTHO05D004277 2.1e-176 625.2 2475 27.8
PSO063G5861 Papaver somniferum HOM05D003460 ORTHO05D004277 2.1e-176 625.2 2542 27.8
FAN10G2005 Fragaria x ananassa HOM05D003460 ORTHO05D004277 4.7e-176 624.0 2468 27.9
Nn1g01533 Nelumbo nucifera HOM05D003460 ORTHO05D004277 8.0e-176 623.2 2474 27.1
FAN10G1682 Fragaria x ananassa HOM05D003460 ORTHO05D004277 5.2e-175 620.5 2472 27.7
TAR636G2440 Trochodendron aralioides HOM05D003460 ORTHO05D004277 6.8e-175 620.2 2464 28.0
FAN06G0746 Fragaria x ananassa HOM05D003460 ORTHO05D004277 1.5e-174 619.0 2471 27.7
Cfa003927 Carpinus fangiana HOM05D003460 ORTHO05D004277 4.4e-174 617.5 2475 27.5
MD01G1060600 Malus domestica HOM05D003460 ORTHO05D004277 9.8e-174 616.3 2474 27.4
Actinidia10010 Actinidia chinensis HOM05D003460 ORTHO05D004277 2.2e-173 615.1 2473 27.9
FvH4_7g14270 Fragaria vesca HOM05D003460 ORTHO05D004277 2.2e-173 615.1 2475 27.6
EL10Ac1g00416 Beta vulgaris HOM05D003460 ORTHO05D004277 3.7e-173 614.4 2449 27.3
Lalb_Chr17g0339611 Lupinus albus HOM05D003460 ORTHO05D004277 3.7e-173 614.4 2486 28.1
Nitab4.5_0000583g0090 Nicotiana tabacum HOM05D003460 ORTHO05D004277 1.4e-172 612.5 2456 27.4
Ciclev10018441m.g Citrus clementina HOM05D003460 ORTHO05D004277 1.8e-172 612.1 2495 27.7
Lj7C512T7 Lonicera japonica HOM05D003460 ORTHO05D004277 1.2e-171 609.4 2441 28.5
QL08p048825 Quercus lobata HOM05D003460 ORTHO05D004277 2.7e-171 608.2 2452 27.9
CSS0048858 Camellia sinensis var. sinensis HOM05D003460 ORTHO05D004277 5.9e-171 607.1 2464 28.2
Duzib133G1367 Durio zibethinus HOM05D003460 ORTHO05D004277 1.0e-170 606.3 2466 27.9
Lalb_Chr04g0256941 Lupinus albus HOM05D003460 ORTHO05D004277 1.3e-170 605.9 2477 27.9
Hund27274 Selenicereus undatus HOM05D003460 ORTHO05D004277 1.3e-170 605.9 2454 26.9
MD07G1137100 Malus domestica HOM05D003460 ORTHO05D004277 1.7e-170 605.5 2465 27.3
Dinv32483 Davidia involucrata HOM05D003460 ORTHO05D004277 1.1e-169 602.8 2395 27.9
Lsat_1_v5_gn_3_137161 Lactuca sativa HOM05D003460 ORTHO05D004277 1.9e-169 602.1 2412 27.3
Peaxi162Scf00020g00327 Petunia axillaris HOM05D003460 ORTHO05D004277 2.5e-169 601.7 2469 27.0
Lj3g0003387 Lotus japonicus HOM05D003460 ORTHO05D004277 5.5e-169 600.5 2465 27.5
Solyc01g094620.3 Solanum lycopersicum HOM05D003460 ORTHO05D004277 5.5e-169 600.5 2461 27.2
Cc02_g38020 Coffea canephora HOM05D003460 ORTHO05D004277 7.2e-169 600.1 2457 27.1
Thecc.01G359000 Theobroma cacao HOM05D003460 ORTHO05D004277 7.2e-169 600.1 2454 27.3
COL.COLO4_12713 Corchorus olitorius HOM05D003460 ORTHO05D004277 2.7e-168 598.2 2442 26.5
Potri.002G159900 Populus trichocarpa HOM05D003460 ORTHO05D004277 2.7e-168 598.2 2487 27.4
CAN.G78.79 Capsicum annuum HOM05D003460 ORTHO05D004277 6.1e-168 597.0 2480 27.1
Sc23g0002910 Simmondsia chinensis HOM05D003460 ORTHO05D004277 1.4e-167 595.9 2447 27.2
Sopen01g038430 Solanum pennellii HOM05D003460 ORTHO05D004277 1.8e-167 595.5 2472 27.2
AUR62004357 Chenopodium quinoa HOM05D003460 ORTHO05D004277 4.0e-167 594.3 2443 27.5
DCAR_008608 Daucus carota HOM05D003460 ORTHO05D004277 5.2e-167 594.0 2466 27.5
HanXRQChr13g0426551 Helianthus annuus HOM05D003460 ORTHO05D004277 5.2e-167 594.0 2427 27.3
AUR62022565 Chenopodium quinoa HOM05D003460 ORTHO05D004277 6.8e-167 593.6 2436 27.3
ECA240G3092 Erigeron canadensis HOM05D003460 ORTHO05D004277 2.0e-166 592.0 2430 27.6
FAN06G4334 Fragaria x ananassa HOM05D003460 ORTHO05D004277 3.4e-166 591.3 2504 27.1
SGA_v2.0_scaffold11G05665 Striga asiatica HOM05D003460 ORTHO05D004277 3.4e-166 591.3 2415 26.9
THA.LOC104825837 Tarenaya hassleriana HOM05D003460 ORTHO05D004277 4.4e-166 590.9 2427 27.6
Sabra02G0126900 Salix brachista HOM05D003460 ORTHO05D004277 1.7e-165 589.0 2503 27.4
SGA_v2.0_scaffold43G16414 Striga asiatica HOM05D003460 ORTHO05D004277 1.7e-165 589.0 2420 26.9
Haze_15503 Corylus avellana HOM05D003460 ORTHO05D004277 2.8e-165 588.2 2483 27.4
CsaV3_3G008910 Cucumis sativus L. HOM05D003460 ORTHO05D004277 4.9e-165 587.4 2455 27.5
Manes.05G034300 Manihot esculenta HOM05D003460 ORTHO05D004277 4.9e-165 587.4 2475 26.7
Medtr8g030800 Medicago truncatula HOM05D003460 ORTHO05D004277 6.3e-165 587.0 2460 27.8
TWI59G0279 Tripterygium wilfordii HOM05D003460 ORTHO05D004277 1.1e-164 586.3 2484 26.6
Duzib268G1202 Durio zibethinus HOM05D003460 ORTHO05D004277 1.8e-164 585.5 2449 26.9
Gorai.008G121300 Gossypium raimondii HOM05D003460 ORTHO05D004277 3.1e-164 584.7 2451 26.8
arahy.Tifrunner.gnm1.ann1.H3LZVP Arachis hypogaea HOM05D003460 ORTHO05D004277 7.0e-164 583.6 2482 27.3
PGR042G0360 Punica granatum HOM05D003460 ORTHO05D004277 3.5e-163 581.3 2461 27.4
BcaB01g02164 Brassica carinata HOM05D003460 ORTHO05D004277 3.8e-162 577.8 2430 27.1
ClCG05G001530 Citrullus lanatus HOM05D003460 ORTHO05D004277 5.0e-162 577.4 2471 26.8
Ca_23633_v3 Cicer arietinum L. HOM05D003460 ORTHO05D004277 3.3e-161 574.7 2462 27.2
Migut.O00143 Erythranthe guttata HOM05D003460 ORTHO05D004277 3.3e-161 574.7 2431 27.2
Gorai.007G099500 Gossypium raimondii HOM05D003460 ORTHO05D004277 3.3e-161 574.7 2459 26.9
MSTRG.17267 Avicennia marina HOM05D003460 ORTHO05D004277 4.3e-161 574.3 2459 26.3
BcaB01g02251 Brassica carinata HOM05D003460 ORTHO05D004277 4.3e-161 574.3 2423 27.3
Gohir.D11G093200 Gossypium hirsutum HOM05D003460 ORTHO05D004277 4.3e-161 574.3 2453 26.9
Sed0006269 Sechium edule HOM05D003460 ORTHO05D004277 4.3e-161 574.3 2451 27.1
Nitab4.5_0000885g0020 Nicotiana tabacum HOM05D003460 ORTHO05D004277 5.6e-161 573.9 2451 26.7
Lj1g0005367 Lotus japonicus HOM05D003460 ORTHO05D004277 7.3e-161 573.5 2475 27.1
Glyma.09G259400 Glycine max HOM05D003460 ORTHO05D004277 9.5e-161 573.2 2450 26.7
A03p32180 Brassica napus HOM05D003460 ORTHO05D004277 1.2e-160 572.8 2446 27.1
BraA03t12388Z Brassica rapa HOM05D003460 ORTHO05D004277 1.2e-160 572.8 2446 27.1
Glyma.18G232900 Glycine max HOM05D003460 ORTHO05D004277 1.2e-160 572.8 2455 27.0
arahy.Tifrunner.gnm1.ann1.T9PB4Q Arachis hypogaea HOM05D003460 ORTHO05D004277 2.8e-160 571.6 2479 27.6
Aa31LG5G530 Aethionema arabicum HOM05D003460 ORTHO05D004277 3.6e-160 571.2 2446 27.2
BcaC01g06879 Brassica carinata HOM05D003460 ORTHO05D004277 1.0e-159 569.7 2444 27.0
C03p39210 Brassica napus HOM05D003460 ORTHO05D004277 1.0e-159 569.7 2444 27.0
BolC3t16192H Brassica oleracea HOM05D003460 ORTHO05D004277 1.8e-159 568.9 2444 27.0
Glyma.07G070700 Glycine max HOM05D003460 ORTHO05D004277 1.8e-159 568.9 2446 27.2
Sp6g00490 Schrenkiella parvula HOM05D003460 ORTHO05D004277 3.0e-159 568.2 2448 27.2
VMungo0331G1375 Vigna mungo HOM05D003460 ORTHO05D004277 5.2e-159 567.4 2449 27.3
Carub.0006s3681 Capsella rubella HOM05D003460 ORTHO05D004277 2.0e-158 565.5 2435 26.7
Psat3g108400 Pisum sativum HOM05D003460 ORTHO05D004277 2.6e-158 565.1 2461 26.8
AT4G00450 Arabidopsis thaliana HOM05D003460 ORTHO05D004277 1.3e-157 562.8 2450 26.9
VMungo1383G3436 Vigna mungo HOM05D003460 ORTHO05D004277 1.3e-157 562.8 2447 26.3
GSVIVG01026933001 Vitis vinifera HOM05D003460 ORTHO05D004277 1.3e-157 562.8 2408 27.9
Ah.05g180610 Amaranthus hybridus HOM05D003460 ORTHO05D004277 2.2e-157 562.0 2472 26.3
Glyma.03G009200 Glycine max HOM05D003460 ORTHO05D004277 2.2e-157 562.0 2445 27.1
Phvul.010G099000 Phaseolus vulgaris HOM05D003460 ORTHO05D004277 2.2e-157 562.0 2449 27.1
THA.LOC104801439 Tarenaya hassleriana HOM05D003460 ORTHO05D004277 3.7e-157 561.2 2427 26.3
Potri.014G084500 Populus trichocarpa HOM05D003460 ORTHO05D004277 4.9e-157 560.8 2484 26.8
Migut.N01446 Erythranthe guttata HOM05D003460 ORTHO05D004277 6.4e-157 560.5 2437 26.8
Sed0017726 Sechium edule HOM05D003460 ORTHO05D004277 7.0e-156 557.0 2474 26.9
AL6G53010 Arabidopsis lyrata HOM05D003460 ORTHO05D004277 5.9e-155 553.9 2435 26.7
HanXRQChr03g0093461 Helianthus annuus HOM05D003460 ORTHO05D004277 1.0e-154 553.1 2406 26.0
Ca_07919_v3 Cicer arietinum L. HOM05D003460 ORTHO05D004277 3.0e-154 551.6 2453 26.7
Manes.01G256801 Manihot esculenta HOM05D003460 ORTHO05D004277 1.1e-153 549.7 2456 25.9
Eucgr.E00136 Eucalyptus grandis HOM05D003460 ORTHO05D004277 1.2e-152 546.2 2463 26.3
CiPaw.02G030700 Carya illinoinensis HOM05D003460 ORTHO05D004277 2.1e-152 545.4 2472 26.7
BolC9t52974H Brassica oleracea HOM05D003460 ORTHO05D004277 6.2e-152 543.9 2434 27.4
Medtr7g077700 Medicago truncatula HOM05D003460 ORTHO05D004277 1.0e-151 543.1 2460 26.5
Oeu053747.5 Olea europaea HOM05D003460 ORTHO05D004277 1.8e-151 542.3 2407 26.4
A09p00470 Brassica napus HOM05D003460 ORTHO05D004277 6.8e-151 540.4 2441 27.3
BcaC04g24169 Brassica carinata HOM05D003460 ORTHO05D004277 8.9e-151 540.0 2433 27.3
C09p00390 Brassica napus HOM05D003460 ORTHO05D004277 8.9e-151 540.0 2433 27.3
Prupe.2G170500 Prunus persica HOM05D003460 ORTHO05D004277 2.2e-149 535.4 2203 26.8
Sabra14G0061300 Salix brachista HOM05D003460 ORTHO05D004277 1.1e-148 533.1 2517 26.6
Lalb_Chr10g0096951 Lupinus albus HOM05D003460 ORTHO05D004277 2.0e-147 528.9 2472 26.7
BraA09t35713Z Brassica rapa HOM05D003460 ORTHO05D004277 1.5e-145 522.7 2460 27.0
Oeu052946.1 Olea europaea HOM05D003460 ORTHO05D004277 3.3e-145 521.5 2414 26.3
Psat4g205160 Pisum sativum HOM05D003460 ORTHO05D004277 9.8e-142 510.0 2432 26.4
Aa31LG1G11050 Aethionema arabicum HOM05D003460 ORTHO05D004277 2.9e-141 508.4 2411 26.0
Thhalv10028357m.g Eutrema salsugineum HOM05D003460 ORTHO05D004277 1.4e-140 506.1 2437 26.7
CiPaw.01G061200 Carya illinoinensis HOM05D003460 ORTHO05D004277 1.7e-138 499.2 2186 26.3
Phvul.008G142400 Phaseolus vulgaris HOM05D003460 ORTHO05D004277 1.9e-137 495.7 2294 26.0
TPR.G37789 Trifolium pratense HOM05D003460 ORTHO05D004277 2.3e-135 488.8 2465 25.2
Atru.chr5.497 Acer truncatum HOM05D003460 ORTHO05D004277 5.1e-130 471.1 1986 26.4
SalBow3G0963 Salvia bowleyana HOM05D003460 ORTHO05D004277 1.6e-128 466.1 2389 25.3
Gohir.D12G111900 Gossypium hirsutum HOM05D003460 ORTHO05D004277 2.6e-126 458.8 2196 25.8
Zm00001eb000520 Zea mays HOM05D003460 ORTHO05D004277 6.4e-125 454.1 2075 26.7
Gohir.A12G108900 Gossypium hirsutum HOM05D003460 ORTHO05D004277 7.1e-124 450.7 2181 25.7
CDE06G2505 Ceratophyllum demersum HOM05D003460 ORTHO05D004277 2.8e-120 438.7 2426 25.1
unitig_0.g1263 Utricularia gibba HOM05D003460 ORTHO05D004277 1.9e-116 426.0 2445 24.5
MELO3C006111.2 Cucumis melo HOM05D003460 ORTHO05D004277 7.4e-105 387.5 2185 25.6
CARHR248550 Cardamine hirsuta HOM05D003460 ORTHO05D004277 9.3e-100 370.5 2115 25.0
CDE04G2266 Ceratophyllum demersum HOM05D003460 ORTHO05D004277 2.1e-99 369.4 2085 25.4
Gohir.A11G088900 Gossypium hirsutum HOM05D003460 ORTHO05D004277 3.0e-98 365.5 2078 25.1
AagrBONN_evm.TU.Sc2ySwM_344.2570 Anthoceros agrestis HOM05D003460 ORTHO05D004277 2.5e-97 362.5 1330 29.6
unitig_61.g26386 Utricularia gibba HOM05D003460 ORTHO05D004277 7.2e-92 344.4 2259 24.6
Dinv43816 Davidia involucrata HOM05D003460 ORTHO05D004277 7.9e-83 314.3 1318 26.5
TPR.G8688 Trifolium pratense HOM05D003460 ORTHO05D004277 1.3e-77 297.0 726 31.5
TPR.G8692 Trifolium pratense HOM05D003460 ORTHO05D004277 2.0e-73 283.1 1184 28.7
Os07g0648266 Oryza sativa ssp. japonica HOM05D003460 ORTHO05D004277 3.7e-72 278.9 1260 26.0
Dinv43815 Davidia involucrata HOM05D003460 ORTHO05D004277 1.2e-70 273.9 979 30.2
HPP92_025394 Vanilla planifolia HOM05D003460 ORTHO05D004277 1.6e-67 263.5 1812 22.7
Pp3c11_14610 Physcomitrium patens HOM05D003460 ORTHO05D004277 4.0e-58 232.3 461 33.8
Os10g0550100 Oryza sativa ssp. japonica HOM05D003460 ORTHO05D004277 1.7e-48 200.3 736 28.9
Os07g0648300 Oryza sativa ssp. japonica HOM05D003460 ORTHO05D004277 5.2e-42 178.7 550 32.0
SHI13447 Sapria himalayana HOM05D003460 ORTHO05D004277 5.8e-41 175.3 945 25.5
MELO3C006109.2 Cucumis melo HOM05D002082 ORTHO05D002130 1.3e-40 174.1 305 36.4
SHI13448 Sapria himalayana HOM05D003460 ORTHO05D004277 4.9e-40 172.2 1115 24.0
HPP92_028275 Vanilla planifolia HOM05D003460 ORTHO05D004277 3.5e-38 166.0 281 37.4
AagrBONN_evm.TU.Sc2ySwM_344.2569 Anthoceros agrestis HOM05D003460 ORTHO05D004277 6.2e-35 155.2 206 41.3
Zm00001eb382450 Zea mays HOM05D003460 ORTHO05D004277 5.2e-34 152.1 276 35.5
Os10g0550066 Oryza sativa ssp. japonica HOM05D003460 ORTHO05D004277 2.8e-27 129.8 153 49.0
CDE04G0432 Ceratophyllum demersum HOM05D003460 ORTHO05D004277 2.7e-22 113.2 305 29.5
Zm00001eb055510 Zea mays HOM05D003460 ORTHO05D004277 1.7e-21 110.5 128 47.7
Atru.chr5.495 Acer truncatum HOM05D003460 ORTHO05D004277 2.3e-21 110.2 244 35.7
Phvul.002G081700 Phaseolus vulgaris HOM05D003460 ORTHO05D004277 6.6e-21 108.6 114 50.0
THA.LOC104827725 Tarenaya hassleriana HOM05D003460 ORTHO05D004277 1.2e-19 104.4 284 31.0
Cfa003926 Carpinus fangiana HOM05D003460 ORTHO05D004277 3.5e-14 86.3 100 44.0
TPR.G701 Trifolium pratense HOM05D003460 ORTHO05D030575 4.0e-10 72.8 149 36.9
HPP92_025393 Vanilla planifolia HOM05D003460 ORTHO05D004277 3.4e-09 69.7 172 30.2
Zm00001eb245130 Zea mays HOM05D003460 ORTHO05D004277 1.4e-07 64.3 85 38.8
PGSC0003DMG400000171 Solanum tuberosum HOM05D003460 ORTHO05D004277 7.1e-07 62.0 145 33.8
Psat0ss3759g0200 Pisum sativum HOM05D003460 ORTHO05D007199 9.3e-07 61.6 315 27.3
Psat4g193320 Pisum sativum HOM05D003460 ORTHO05D004277 6.0e-06 58.9 66 43.9


User provided reference genes

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