Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g44443 Chara braunii HOM05D005652 ORTHO05D007300 4.5e-46 187.6 95 100.0
Sc23g0000830 Simmondsia chinensis HOM05D005652 ORTHO05D007300 6.9e-39 163.7 93 88.2
Atru.chr13.1343 Acer truncatum HOM05D005652 ORTHO05D007300 3.4e-38 161.4 87 93.1
ATR0041G005 Amborella trichopoda HOM05D005652 ORTHO05D007300 3.4e-38 161.4 93 89.2
Oeu050889.1 Olea europaea HOM05D005652 ORTHO05D007300 3.4e-38 161.4 94 88.3
TAR376G0464 Trochodendron aralioides HOM05D005652 ORTHO05D007300 3.4e-38 161.4 85 94.1
Aqoxy6G01736 Aquilegia oxysepala HOM05D005652 ORTHO05D007300 5.9e-38 160.6 82 96.3
CiPaw.05G226800 Carya illinoinensis HOM05D005652 ORTHO05D007300 5.9e-38 160.6 90 88.9
Ciclev10002945m.g Citrus clementina HOM05D005652 ORTHO05D007300 7.7e-38 160.2 86 91.9
Lj1g0016776 Lotus japonicus HOM05D005652 ORTHO05D007300 7.7e-38 160.2 86 91.9
Nitab4.5_0000943g0120 Nicotiana tabacum HOM05D005652 ORTHO05D007300 7.7e-38 160.2 90 88.9
TPR.G8501 Trifolium pratense HOM05D005652 ORTHO05D007300 7.7e-38 160.2 82 96.3
Cc06_g19090 Coffea canephora HOM05D005652 ORTHO05D007300 1.0e-37 159.8 90 88.9
arahy.Tifrunner.gnm1.ann1.AJPJ4J Arachis hypogaea HOM05D005652 ORTHO05D007300 1.3e-37 159.5 86 90.7
HanXRQChr14g0432351 Helianthus annuus HOM05D005652 ORTHO05D007300 1.3e-37 159.5 90 91.1
Nn5g28127 Nelumbo nucifera HOM05D005652 ORTHO05D007300 1.3e-37 159.5 85 92.9
Solyc08g075780.4 Solanum lycopersicum HOM05D005652 ORTHO05D007300 1.3e-37 159.5 84 94.0
GSVIVG01008919001 Vitis vinifera HOM05D005652 ORTHO05D007300 1.3e-37 159.5 85 92.9
Dinv27358 Davidia involucrata HOM05D005652 ORTHO05D007300 1.7e-37 159.1 86 90.7
Duzib093G1773 Durio zibethinus HOM05D005652 ORTHO05D007300 1.7e-37 159.1 86 91.9
Hma1.2p1_0009F.1_g006210 Hydrangea macrophylla HOM05D005652 ORTHO05D007300 1.7e-37 159.1 86 91.9
Pp3c6_16720 Physcomitrium patens HOM05D005652 ORTHO05D007300 1.7e-37 159.1 81 96.3
Psat2g096080 Pisum sativum HOM05D005652 ORTHO05D007300 1.7e-37 159.1 87 90.8
Hund16832 Selenicereus undatus HOM05D005652 ORTHO05D007300 1.7e-37 159.1 90 87.8
Aa31LG4G7830 Aethionema arabicum HOM05D005652 ORTHO05D007300 2.2e-37 158.7 86 89.5
MSTRG.1473 Avicennia marina HOM05D005652 ORTHO05D007300 2.2e-37 158.7 82 95.1
CSS0012578 Camellia sinensis var. sinensis HOM05D005652 ORTHO05D007300 2.2e-37 158.7 82 95.1
CANSAT54G2625 Cannabis sativa HOM05D005652 ORTHO05D007300 2.2e-37 158.7 82 95.1
CAN.G1483.5 Capsicum annuum HOM05D005652 ORTHO05D007300 2.2e-37 158.7 82 95.1
Ca_19025_v3 Cicer arietinum L. HOM05D005652 ORTHO05D007300 2.2e-37 158.7 82 95.1
Ca_26775_v3 Cicer arietinum L. HOM05D005652 ORTHO05D007300 2.2e-37 158.7 82 95.1
ClCG03G009400 Citrullus lanatus HOM05D005652 ORTHO05D007300 2.2e-37 158.7 82 95.1
MELO3C003038.2 Cucumis melo HOM05D005652 ORTHO05D007300 2.2e-37 158.7 82 95.1
CsaV3_5G023210 Cucumis sativus L. HOM05D005652 ORTHO05D007300 2.2e-37 158.7 82 95.1
Duzib041G0199 Durio zibethinus HOM05D005652 ORTHO05D007300 2.2e-37 158.7 82 95.1
Eucgr.F03755 Eucalyptus grandis HOM05D005652 ORTHO05D007300 2.2e-37 158.7 82 95.1
Glyma.04G252400 Glycine max HOM05D005652 ORTHO05D007300 2.2e-37 158.7 82 95.1
Glyma.06G110100 Glycine max HOM05D005652 ORTHO05D007300 2.2e-37 158.7 82 95.1
Glyma.14G163800 Glycine max HOM05D005652 ORTHO05D007300 2.2e-37 158.7 82 95.1
Gohir.A06G041900 Gossypium hirsutum HOM05D005652 ORTHO05D007300 2.2e-37 158.7 82 95.1
Gohir.D06G042900 Gossypium hirsutum HOM05D005652 ORTHO05D007300 2.2e-37 158.7 82 95.1
Gorai.005G091100 Gossypium raimondii HOM05D005652 ORTHO05D007300 2.2e-37 158.7 82 95.1
Gorai.010G048100 Gossypium raimondii HOM05D005652 ORTHO05D007300 2.2e-37 158.7 82 95.1
Lsat_1_v5_gn_5_65281 Lactuca sativa HOM05D005652 ORTHO05D007300 2.2e-37 158.7 90 87.8
Lalb_Chr08g0241571 Lupinus albus HOM05D005652 ORTHO05D007300 2.2e-37 158.7 82 95.1
Lalb_Chr23g0270881 Lupinus albus HOM05D005652 ORTHO05D007300 2.2e-37 158.7 82 95.1
MD08G1169400 Malus domestica HOM05D005652 ORTHO05D007300 2.2e-37 158.7 82 95.1
MD15G1356000 Malus domestica HOM05D005652 ORTHO05D007300 2.2e-37 158.7 82 95.1
Manes.18G074500 Manihot esculenta HOM05D005652 ORTHO05D007300 2.2e-37 158.7 82 95.1
Medtr5g059210 Medicago truncatula HOM05D005652 ORTHO05D007300 2.2e-37 158.7 82 95.1
Nitab4.5_0000030g0080 Nicotiana tabacum HOM05D005652 ORTHO05D007300 2.2e-37 158.7 82 95.1
Nitab4.5_0014082g0020 Nicotiana tabacum HOM05D005652 ORTHO05D007300 2.2e-37 158.7 82 95.1
Peaxi162Scf00408g00839 Petunia axillaris HOM05D005652 ORTHO05D007300 2.2e-37 158.7 82 95.1
Peaxi162Scf00876g00433 Petunia axillaris HOM05D005652 ORTHO05D007300 2.2e-37 158.7 82 95.1
Phvul.009G121900 Phaseolus vulgaris HOM05D005652 ORTHO05D007300 2.2e-37 158.7 82 95.1
RcHm_v2.0_Chr6g0294951 Rosa chinensis HOM05D005652 ORTHO05D007300 2.2e-37 158.7 82 95.1
Sp5g32880 Schrenkiella parvula HOM05D005652 ORTHO05D007300 2.2e-37 158.7 86 89.5
Sed0000902 Sechium edule HOM05D005652 ORTHO05D007300 2.2e-37 158.7 82 95.1
Solyc12g096120.2 Solanum lycopersicum HOM05D005652 ORTHO05D007300 2.2e-37 158.7 82 95.1
Sopen12g032000 Solanum pennellii HOM05D005652 ORTHO05D007300 2.2e-37 158.7 82 95.1
PGSC0003DMG400029291 Solanum tuberosum HOM05D005652 ORTHO05D007300 2.2e-37 158.7 82 95.1
PGSC0003DMG400030853 Solanum tuberosum HOM05D005652 ORTHO05D007300 2.2e-37 158.7 82 95.1
THA.LOC104813142 Tarenaya hassleriana HOM05D005652 ORTHO05D007300 2.2e-37 158.7 82 95.1
THA.LOC104817112 Tarenaya hassleriana HOM05D005652 ORTHO05D007300 2.2e-37 158.7 82 95.1
Thecc.08G119900 Theobroma cacao HOM05D005652 ORTHO05D007300 2.2e-37 158.7 82 95.1
TWI12G1472 Tripterygium wilfordii HOM05D005652 ORTHO05D007300 2.2e-37 158.7 82 95.1
TWI56G0667 Tripterygium wilfordii HOM05D005652 ORTHO05D007300 2.2e-37 158.7 82 95.1
MSTRG.22423 Avicennia marina HOM05D005652 ORTHO05D007300 2.9e-37 158.3 86 90.7
MBI09_g06382_MAGBIO Magnolia biondii HOM05D005652 ORTHO05D007300 2.9e-37 158.3 82 95.1
Potri.002G087200 Populus trichocarpa HOM05D005652 ORTHO05D007300 2.9e-37 158.3 89 88.8
PGR042G1865 Punica granatum HOM05D005652 ORTHO05D007300 2.9e-37 158.3 85 91.8
Sabra02G0068700 Salix brachista HOM05D005652 ORTHO05D007300 2.9e-37 158.3 89 88.8
SalBow7G3105 Salvia bowleyana HOM05D005652 ORTHO05D007300 2.9e-37 158.3 82 93.9
AL2G37930 Arabidopsis lyrata HOM05D005652 ORTHO05D007300 3.8e-37 157.9 82 93.9
AT1G77710 Arabidopsis thaliana HOM05D005652 ORTHO05D007300 3.8e-37 157.9 82 93.9
BcaB02g07127 Brassica carinata HOM05D005652 ORTHO05D007300 3.8e-37 157.9 82 93.9
BcaB05g25069 Brassica carinata HOM05D005652 ORTHO05D007300 3.8e-37 157.9 82 93.9
BcaC03g15763 Brassica carinata HOM05D005652 ORTHO05D007300 3.8e-37 157.9 82 93.9
BcaC08g45458 Brassica carinata HOM05D005652 ORTHO05D007300 3.8e-37 157.9 82 93.9
A07p27870 Brassica napus HOM05D005652 ORTHO05D007300 3.8e-37 157.9 82 93.9
C06p30860 Brassica napus HOM05D005652 ORTHO05D007300 3.8e-37 157.9 82 93.9
BolC6t38248H Brassica oleracea HOM05D005652 ORTHO05D007300 3.8e-37 157.9 82 93.9
BraA07t30426Z Brassica rapa HOM05D005652 ORTHO05D007300 3.8e-37 157.9 82 93.9
Carub.0002s2459 Capsella rubella HOM05D005652 ORTHO05D007300 3.8e-37 157.9 82 93.9
CARHR071220 Cardamine hirsuta HOM05D005652 ORTHO05D007300 3.8e-37 157.9 82 93.9
Mapoly0081s0039 Marchantia polymorpha HOM05D005652 ORTHO05D007300 3.8e-37 157.9 81 95.1
AagrBONN_evm.TU.Sc2ySwM_362.1619 Anthoceros agrestis HOM05D005652 ORTHO05D007300 5.0e-37 157.5 82 93.9
Haze_00495 Corylus avellana HOM05D000102 ORTHO05D003793 5.0e-37 157.5 82 93.9
FAN20G1151 Fragaria x ananassa HOM05D005652 ORTHO05D007300 5.0e-37 157.5 82 93.9
FAN24G1202 Fragaria x ananassa HOM05D000102 ORTHO05D003793 5.0e-37 157.5 82 93.9
FAN27G1241 Fragaria x ananassa HOM05D005652 ORTHO05D007300 5.0e-37 157.5 82 93.9
Nitab4.5_0013867g0020 Nicotiana tabacum HOM05D005652 ORTHO05D007300 5.0e-37 157.5 82 93.9
Oeu050252.1 Olea europaea HOM05D005652 ORTHO05D007300 5.0e-37 157.5 82 93.9
Prupe.1G503300 Prunus persica HOM05D005652 ORTHO05D007300 5.0e-37 157.5 82 93.9
SGA_v2.0_scaffold24G10489 Striga asiatica HOM05D005652 ORTHO05D007300 5.0e-37 157.5 85 91.8
arahy.Tifrunner.gnm1.ann1.KZ1VTZ Arachis hypogaea HOM05D005652 ORTHO05D007300 6.5e-37 157.1 86 89.5
CDE06G1598 Ceratophyllum demersum HOM05D005652 ORTHO05D007300 6.5e-37 157.1 81 95.1
CDE08G1473 Ceratophyllum demersum HOM05D005652 ORTHO05D007300 6.5e-37 157.1 81 95.1
Migut.N03303 Erythranthe guttata HOM05D005652 ORTHO05D007300 6.5e-37 157.1 85 91.8
Potri.005G173800 Populus trichocarpa HOM05D005652 ORTHO05D007300 6.5e-37 157.1 89 87.6
Hund27043 Selenicereus undatus HOM05D005652 ORTHO05D007300 6.5e-37 157.1 82 92.7
Thhalv10019370m.g Eutrema salsugineum HOM05D005652 ORTHO05D007300 8.5e-37 156.8 82 92.7
FvH4_2g26390 Fragaria vesca HOM05D005652 ORTHO05D007300 8.5e-37 156.8 82 93.9
Gohir.A02G074200 Gossypium hirsutum HOM05D005652 ORTHO05D007300 8.5e-37 156.8 82 93.9
unitig_37.g12684 Utricularia gibba HOM05D005652 ORTHO05D007300 8.5e-37 156.8 82 93.9
PSO170G5049 Papaver somniferum HOM05D005652 ORTHO05D007300 1.1e-36 156.4 82 93.9
PSO528G0083 Papaver somniferum HOM05D005652 ORTHO05D007300 1.1e-36 156.4 82 93.9
ECA238G1260 Erigeron canadensis HOM05D005652 ORTHO05D007300 1.4e-36 156.0 87 89.7
Os01g0962400 Oryza sativa ssp. japonica HOM05D005652 ORTHO05D007300 1.4e-36 156.0 82 92.7
EL10Ac1g00017 Beta vulgaris HOM05D005652 ORTHO05D007300 1.9e-36 155.6 86 89.5
Gohir.D02G081400 Gossypium hirsutum HOM05D005652 ORTHO05D007300 2.5e-36 155.2 82 93.9
Zm00001eb140360 Zea mays HOM05D005652 ORTHO05D007300 2.5e-36 155.2 85 88.2
Ah.05g172270 Amaranthus hybridus HOM05D005652 ORTHO05D007300 3.2e-36 154.8 82 91.5
Migut.C01167 Erythranthe guttata HOM05D005652 ORTHO05D007300 3.2e-36 154.8 83 91.6
SMO147G0269 Selaginella moellendorffii HOM05D005652 ORTHO05D007300 2.7e-35 151.8 86 87.2
Actinidia02604 Actinidia chinensis HOM05D005652 ORTHO05D007300 2.0e-33 145.6 102 75.5
FAN15G0151 Fragaria x ananassa HOM05D000102 ORTHO05D003793 3.7e-32 141.4 106 71.7
Haze_27250 Corylus avellana HOM05D005652 ORTHO05D007300 2.6e-30 135.2 85 75.3
PRCOL_00001930 Prasinoderma coloniale HOM05D005652 ORTHO05D007300 1.1e-28 129.8 81 82.7
CAN.G947.38 Capsicum annuum HOM05D005652 ORTHO05D007300 1.6e-27 125.9 64 95.3
Rhsim11G0066600 Rhododendron simsii HOM05D005652 ORTHO05D007300 1.6e-27 125.9 64 95.3
AUR62023629 Chenopodium quinoa HOM05D000102 ORTHO05D003793 6.1e-27 124.0 63 95.2
Glyma.13G082800 Glycine max HOM05D005652 ORTHO05D007300 2.3e-26 122.1 64 92.2
QL09p036189 Quercus lobata HOM05D005652 ORTHO05D007300 4.0e-26 121.3 175 44.6
Oeu026729.1 Olea europaea HOM05D005652 ORTHO05D007300 2.0e-25 119.0 62 95.2
SalBow7G1395 Salvia bowleyana HOM05D005652 ORTHO05D007300 1.3e-24 116.3 61 93.4
HPP92_028057 Vanilla planifolia HOM05D005652 ORTHO05D007300 5.9e-22 107.5 84 71.4
Oeu062544.1 Olea europaea HOM05D005652 ORTHO05D007300 8.0e-19 97.1 62 83.9
Cpa.g.sc36.14 Carica papaya HOM05D005652 ORTHO05D007300 1.8e-18 95.9 60 83.3
COL.COLO4_38344 Corchorus olitorius HOM05D005652 ORTHO05D007300 4.0e-18 94.7 50 94.0
AUR62004713 Chenopodium quinoa HOM05D005652 ORTHO05D007300 5.2e-18 94.4 50 92.0
BraA02t07181Z Brassica rapa HOM05D005652 ORTHO05D007300 6.8e-18 94.0 64 76.6
BolC2t09520H Brassica oleracea HOM05D005652 ORTHO05D007300 4.4e-17 91.3 45 93.3
Actinidia13808 Actinidia chinensis HOM05D005652 ORTHO05D007300 2.8e-16 88.6 56 78.6
Sed0022236 Sechium edule HOM05D005652 ORTHO05D007300 4.8e-16 87.8 83 60.2
AagrBONN_evm.TU.Sc2ySwM_344.240 Anthoceros agrestis HOM05D005652 ORTHO05D007300 1.0e-10 70.1 39 89.7
TAR381G0412 Trochodendron aralioides HOM05D000102 ORTHO05D003793 7.5e-09 63.9 32 96.9
Dinv20715 Davidia involucrata HOM05D005652 ORTHO05D185765 1.6e-06 56.2 39 74.4


User provided reference genes

Program Settings