Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g44347 Chara braunii HOM05D003263 ORTHO05D004801 5.9e-233 810.4 398 100.0
CBR_g6354 Chara braunii HOM05D003263 ORTHO05D004801 1.2e-76 291.2 147 98.0
Cre12.g535950 Chlamydomonas reinhardtii HOM05D003263 ORTHO05D004801 3.3e-42 176.8 146 60.3
Mapoly0153s0030 Marchantia polymorpha HOM05D003263 ORTHO05D004801 8.2e-41 172.2 138 61.6
MCO08G340 Micromonas commoda HOM05D003263 ORTHO05D004801 3.1e-40 170.2 141 59.6
HanXRQChr07g0191741 Helianthus annuus HOM05D003263 ORTHO05D004801 5.0e-38 162.9 141 56.7
Pp3c1_34100 Physcomitrium patens HOM05D003263 ORTHO05D004801 5.0e-38 162.9 147 56.5
Pp3c1_34110 Physcomitrium patens HOM05D003263 ORTHO05D004801 5.0e-38 162.9 147 56.5
Pp3c1_34140 Physcomitrium patens HOM05D003263 ORTHO05D004801 5.0e-38 162.9 147 56.5
Thecc.04G063600 Theobroma cacao HOM05D003263 ORTHO05D004801 2.5e-37 160.6 142 57.0
Pp3c19_19270 Physcomitrium patens HOM05D003263 ORTHO05D004801 7.2e-37 159.1 147 56.5
AagrBONN_evm.TU.Sc2ySwM_228.2430 Anthoceros agrestis HOM05D003263 ORTHO05D004801 1.2e-36 158.3 147 52.4
HanXRQChr14g0444641 Helianthus annuus HOM05D003263 ORTHO05D004801 2.7e-36 157.1 141 56.0
Duzib138G0925 Durio zibethinus HOM05D003263 ORTHO05D004801 4.6e-36 156.4 142 55.6
Manes.02G078500 Manihot esculenta HOM05D003263 ORTHO05D004801 7.9e-36 155.6 142 52.8
Lj6g0025109 Lotus japonicus HOM05D003263 ORTHO05D004801 1.0e-35 155.2 142 56.3
SMO331G0029 Selaginella moellendorffii HOM05D003263 ORTHO05D004801 1.0e-35 155.2 147 53.1
AT5G37510 Arabidopsis thaliana HOM05D003263 ORTHO05D004801 1.8e-35 154.5 142 54.2
Ciclev10019002m.g Citrus clementina HOM05D003263 ORTHO05D004801 1.8e-35 154.5 142 54.9
Manes.01G120700 Manihot esculenta HOM05D003263 ORTHO05D004801 1.8e-35 154.5 142 54.2
Atru.chr1.2038 Acer truncatum HOM05D003263 ORTHO05D004801 2.3e-35 154.1 142 53.5
Cpa.g.sc116.77 Carica papaya HOM05D003263 ORTHO05D004801 2.3e-35 154.1 142 53.5
CANSAT56G4352 Cannabis sativa HOM05D003263 ORTHO05D004801 3.9e-35 153.3 142 53.5
AL7G46270 Arabidopsis lyrata HOM05D003263 ORTHO05D004801 5.1e-35 152.9 142 53.5
CARHR215400 Cardamine hirsuta HOM05D003263 ORTHO05D004801 5.1e-35 152.9 142 53.5
COL.COLO4_13315 Corchorus olitorius HOM05D003263 ORTHO05D004801 5.1e-35 152.9 142 52.8
Hund13092 Selenicereus undatus HOM05D003263 ORTHO05D004801 5.1e-35 152.9 142 53.5
vmacro18524 Vaccinium macrocarpon HOM05D003263 ORTHO05D004801 5.1e-35 152.9 142 54.2
Gohir.D07G183900 Gossypium hirsutum HOM05D003263 ORTHO05D004801 6.7e-35 152.5 142 53.5
Cfa025667 Carpinus fangiana HOM05D003263 ORTHO05D004801 8.8e-35 152.1 144 52.8
BcaB06g27086 Brassica carinata HOM05D003263 ORTHO05D004801 1.1e-34 151.8 142 53.5
BcaC02g09578 Brassica carinata HOM05D003263 ORTHO05D004801 1.1e-34 151.8 142 53.5
A04p10660 Brassica napus HOM05D003263 ORTHO05D004801 1.1e-34 151.8 142 53.5
C04p44380 Brassica napus HOM05D003263 ORTHO05D004801 1.1e-34 151.8 142 53.5
BolC4t26009H Brassica oleracea HOM05D003263 ORTHO05D004801 1.1e-34 151.8 142 53.5
BraA04t16733Z Brassica rapa HOM05D003263 ORTHO05D004801 1.1e-34 151.8 142 53.5
Thhalv10027640m.g Eutrema salsugineum HOM05D003263 ORTHO05D004801 1.1e-34 151.8 142 52.8
FAN23G0774 Fragaria x ananassa HOM05D003263 ORTHO05D004801 1.1e-34 151.8 141 53.2
Medtr3g065130 Medicago truncatula HOM05D003263 ORTHO05D004801 1.1e-34 151.8 142 54.9
CiPaw.03G074100 Carya illinoinensis HOM05D003263 ORTHO05D004801 1.5e-34 151.4 142 53.5
DCAR_014159 Daucus carota HOM05D003263 ORTHO05D004801 1.5e-34 151.4 142 53.5
FAN26G0816 Fragaria x ananassa HOM05D003263 ORTHO05D004801 1.5e-34 151.4 142 52.8
Aa31LG9G17520 Aethionema arabicum HOM05D003263 ORTHO05D004801 2.0e-34 151.0 142 53.5
Carub.0007s3268 Capsella rubella HOM05D003263 ORTHO05D004801 2.0e-34 151.0 142 52.1
Gohir.A07G176600 Gossypium hirsutum HOM05D003263 ORTHO05D004801 2.0e-34 151.0 142 53.5
Lsat_1_v5_gn_3_63961 Lactuca sativa HOM05D003263 ORTHO05D004801 2.0e-34 151.0 142 54.2
Aa31LG9G17530 Aethionema arabicum HOM05D003263 ORTHO05D004801 3.3e-34 150.2 142 53.5
ECA238G3173 Erigeron canadensis HOM05D003263 ORTHO05D004801 3.3e-34 150.2 141 52.5
FvH4_1g30070 Fragaria vesca HOM05D003263 ORTHO05D004801 3.3e-34 150.2 142 52.1
Glyma.11G214800 Glycine max HOM05D003263 ORTHO05D004801 3.3e-34 150.2 142 54.9
unitig_748.g8633 Utricularia gibba HOM05D003263 ORTHO05D004801 3.3e-34 150.2 142 50.7
Duzib133G1400 Durio zibethinus HOM05D003263 ORTHO05D004801 4.3e-34 149.8 142 52.8
FAN19G0316 Fragaria x ananassa HOM05D003263 ORTHO05D004801 4.3e-34 149.8 142 52.1
Os03g0713400 Oryza sativa ssp. japonica HOM05D003263 ORTHO05D004801 4.3e-34 149.8 142 53.5
Potri.004G082800 Populus trichocarpa HOM05D003263 ORTHO05D004801 4.3e-34 149.8 142 52.1
Prupe.3G165400 Prunus persica HOM05D003263 ORTHO05D004801 4.3e-34 149.8 142 52.8
Actinidia35722 Actinidia chinensis HOM05D003263 ORTHO05D004801 5.7e-34 149.4 142 52.1
VMungo1383G2082 Vigna mungo HOM05D003263 ORTHO05D004801 5.7e-34 149.4 142 54.2
Zm00001eb055050 Zea mays HOM05D003263 ORTHO05D004801 5.7e-34 149.4 143 54.5
Gorai.001G204300 Gossypium raimondii HOM05D003263 ORTHO05D004801 7.4e-34 149.1 142 52.8
Nitab4.5_0011135g0010 Nicotiana tabacum HOM05D003263 ORTHO05D004801 7.4e-34 149.1 141 52.5
Phvul.001G229000 Phaseolus vulgaris HOM05D003263 ORTHO05D004801 7.4e-34 149.1 142 54.2
Rhsim08G0019700 Rhododendron simsii HOM05D003263 ORTHO05D004801 7.4e-34 149.1 142 52.8
Solyc11g011470.2 Solanum lycopersicum HOM05D003263 ORTHO05D004801 7.4e-34 149.1 141 51.8
AL1G43210 Arabidopsis lyrata HOM05D003263 ORTHO05D004801 9.7e-34 148.7 142 52.8
CAN.G222.62 Capsicum annuum HOM05D003263 ORTHO05D004801 9.7e-34 148.7 141 51.8
Ca_17086_v3 Cicer arietinum L. HOM05D003263 ORTHO05D004801 9.7e-34 148.7 142 55.6
THA.LOC104822242 Tarenaya hassleriana HOM05D003263 ORTHO05D004801 9.7e-34 148.7 142 52.1
CSS0018871 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 1.3e-33 148.3 142 52.1
Haze_14285 Corylus avellana HOM05D003263 ORTHO05D004801 1.3e-33 148.3 142 52.8
MD09G1268900 Malus domestica HOM05D003263 ORTHO05D004801 1.3e-33 148.3 142 50.7
Psat5g119880 Pisum sativum HOM05D003263 ORTHO05D004801 1.3e-33 148.3 142 54.2
SHI30113 Sapria himalayana HOM05D003263 ORTHO05D004801 1.3e-33 148.3 147 51.0
Zm00001eb216210 Zea mays HOM05D003263 ORTHO05D004801 1.3e-33 148.3 142 54.2
Cfa007786 Carpinus fangiana HOM05D003263 ORTHO05D004801 1.7e-33 147.9 142 52.1
Gohir.D07G176300 Gossypium hirsutum HOM05D003263 ORTHO05D004801 1.7e-33 147.9 142 52.1
Gorai.001G197100 Gossypium raimondii HOM05D003263 ORTHO05D004801 1.7e-33 147.9 142 52.1
Sopen11g006260 Solanum pennellii HOM05D003263 ORTHO05D004801 1.7e-33 147.9 141 51.8
MSTRG.3699 Avicennia marina HOM05D003263 ORTHO05D004801 2.2e-33 147.5 142 52.8
Cc07_g13220 Coffea canephora HOM05D003263 ORTHO05D004801 2.2e-33 147.5 142 50.7
MD17G1267300 Malus domestica HOM05D003263 ORTHO05D004801 2.2e-33 147.5 142 51.4
Peaxi162Scf00464g00325 Petunia axillaris HOM05D003263 ORTHO05D004801 2.2e-33 147.5 141 51.8
RcHm_v2.0_Chr3g0491991 Rosa chinensis HOM05D003263 ORTHO05D004801 2.2e-33 147.5 142 52.8
SalBow5G3125 Salvia bowleyana HOM05D003263 ORTHO05D004801 2.2e-33 147.5 142 52.8
TPR.G23206 Trifolium pratense HOM05D003263 ORTHO05D004801 2.8e-33 147.1 142 54.9
ClCG05G010610 Citrullus lanatus HOM05D003263 ORTHO05D004801 3.7e-33 146.7 142 52.1
Lalb_Chr18g0053541 Lupinus albus HOM05D003263 ORTHO05D004801 3.7e-33 146.7 142 54.2
SGA_v2.0_scaffold2G00947 Striga asiatica HOM05D003263 ORTHO05D004801 3.7e-33 146.7 141 52.5
THA.LOC104805635 Tarenaya hassleriana HOM05D003263 ORTHO05D004801 3.7e-33 146.7 144 55.6
Ah.10g032470 Amaranthus hybridus HOM05D003263 ORTHO05D004801 4.8e-33 146.4 137 51.8
ATR0118G003 Amborella trichopoda HOM05D003263 ORTHO05D004801 4.8e-33 146.4 142 52.8
Lalb_Chr15g0085021 Lupinus albus HOM05D003263 ORTHO05D004801 4.8e-33 146.4 142 54.2
Potri.017G136133 Populus trichocarpa HOM05D003263 ORTHO05D004801 4.8e-33 146.4 142 51.4
SpUn1854_0010 Schrenkiella parvula HOM05D003263 ORTHO05D004801 4.8e-33 146.4 142 52.1
Ah.10g032480 Amaranthus hybridus HOM05D003263 ORTHO05D004801 6.3e-33 146.0 142 50.7
PGSC0003DMG400013309 Solanum tuberosum HOM05D003263 ORTHO05D004801 6.3e-33 146.0 141 51.8
Glyma.18G041700 Glycine max HOM05D003263 ORTHO05D004801 8.2e-33 145.6 137 54.0
arahy.Tifrunner.gnm1.ann1.AUXW6G Arachis hypogaea HOM05D003263 ORTHO05D004801 1.1e-32 145.2 141 55.3
arahy.Tifrunner.gnm1.ann1.ZZ0CH2 Arachis hypogaea HOM05D003263 ORTHO05D004801 1.4e-32 144.8 141 55.3
Dinv28178 Davidia involucrata HOM05D003263 ORTHO05D004801 1.4e-32 144.8 146 51.4
Migut.H02232 Erythranthe guttata HOM05D003263 ORTHO05D004801 1.8e-32 144.4 142 52.1
Migut.K00926 Erythranthe guttata HOM05D003263 ORTHO05D004801 1.8e-32 144.4 142 51.4
Gohir.A07G170100 Gossypium hirsutum HOM05D003263 ORTHO05D004801 1.8e-32 144.4 142 51.4
TWI77G0544 Tripterygium wilfordii HOM05D003263 ORTHO05D004801 1.8e-32 144.4 142 50.7
MSTRG.15657 Avicennia marina HOM05D003263 ORTHO05D004801 2.4e-32 144.1 137 52.6
Oeu030292.1 Olea europaea HOM05D003263 ORTHO05D004801 2.4e-32 144.1 142 50.7
Eucgr.J01621 Eucalyptus grandis HOM05D003263 ORTHO05D004801 3.1e-32 143.7 142 50.7
HPP92_020298 Vanilla planifolia HOM05D003263 ORTHO05D004801 3.1e-32 143.7 142 52.8
EL10Ac2g03207 Beta vulgaris HOM05D003263 ORTHO05D004801 4.1e-32 143.3 142 50.7
QL02p059434 Quercus lobata HOM05D003263 ORTHO05D004801 5.3e-32 142.9 142 51.4
Aqoxy3G04075 Aquilegia oxysepala HOM05D003263 ORTHO05D004801 9.1e-32 142.1 138 51.4
Sed0016313 Sechium edule HOM05D003263 ORTHO05D004801 9.1e-32 142.1 142 49.3
CsaV3_3G017880 Cucumis sativus L. HOM05D003263 ORTHO05D004801 1.2e-31 141.7 142 50.7
Dinv19049 Davidia involucrata HOM05D003263 ORTHO05D004801 1.2e-31 141.7 141 51.1
TWI74G0116 Tripterygium wilfordii HOM05D003263 ORTHO05D004801 1.5e-31 141.4 142 49.3
MELO3C020331.2 Cucumis melo HOM05D003263 ORTHO05D004801 2.0e-31 141.0 142 50.0
TAR629G0765 Trochodendron aralioides HOM05D003263 ORTHO05D004801 2.6e-31 140.6 142 50.7
PSO017G4553 Papaver somniferum HOM05D003263 ORTHO05D004801 3.4e-31 140.2 142 50.7
AUR62037782 Chenopodium quinoa HOM05D003263 ORTHO05D004801 5.9e-31 139.4 142 47.9
AUR62042225 Chenopodium quinoa HOM05D003263 ORTHO05D004801 5.9e-31 139.4 142 47.9
PSO478G1645 Papaver somniferum HOM05D003263 ORTHO05D004801 5.9e-31 139.4 142 50.7
PGR042G3530 Punica granatum HOM05D003263 ORTHO05D004801 5.9e-31 139.4 142 50.7
Sc14g0006900 Simmondsia chinensis HOM05D003263 ORTHO05D004801 5.9e-31 139.4 142 48.6
SGA_v2.0_scaffold108G30966 Striga asiatica HOM05D003263 ORTHO05D004801 1.3e-30 138.3 142 49.3
MBI19_g09384_MAGBIO Magnolia biondii HOM05D003263 ORTHO05D004801 1.7e-30 137.9 141 50.4
GSVIVG01030914001 Vitis vinifera HOM05D003263 ORTHO05D004801 1.7e-30 137.9 142 49.3
PRCOL_00000346 Prasinoderma coloniale HOM05D003263 ORTHO05D004801 3.8e-30 136.7 140 49.3
Sed0005557 Sechium edule HOM05D003263 ORTHO05D004801 3.8e-30 136.7 142 48.6
CDE05G1041 Ceratophyllum demersum HOM05D003263 ORTHO05D004801 5.0e-30 136.3 141 48.2
CDE05G1320 Ceratophyllum demersum HOM05D003263 ORTHO05D004801 9.4e-29 132.1 131 50.4
Haze_26802 Corylus avellana HOM05D003263 ORTHO05D004801 3.6e-28 130.2 151 48.3
Oeu062706.1 Olea europaea HOM05D003263 ORTHO05D004801 1.5e-26 124.8 142 44.4
CSS0049015 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 2.0e-26 124.4 142 47.9
CSS0039899 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 5.7e-26 122.9 142 46.5
Haze_27240 Corylus avellana HOM05D003263 ORTHO05D004801 1.0e-22 112.1 149 44.3
VMungo0647G1524 Vigna mungo HOM05D003263 ORTHO05D004801 7.2e-21 105.9 113 51.3
Mapoly0108s0011 Marchantia polymorpha HOM05D005521 ORTHO05D017330 3.7e-17 93.6 168 33.3
Nitab4.5_0006562g0010 Nicotiana tabacum HOM05D003263 ORTHO05D004801 1.3e-14 85.1 58 69.0
arahy.Tifrunner.gnm1.ann1.5H82NF Arachis hypogaea HOM05D003263 ORTHO05D004801 1.2e-12 78.6 75 57.3
arahy.Tifrunner.gnm1.ann1.HY7M04 Arachis hypogaea HOM05D000164 ORTHO05D004801 1.2e-12 78.6 75 57.3
arahy.Tifrunner.gnm1.ann1.RIP12T Arachis hypogaea HOM05D003263 ORTHO05D004801 1.2e-12 78.6 75 57.3
MCO14G126 Micromonas commoda HOM05D005521 ORTHO05D017330 6.1e-12 76.3 169 27.8
Oeu039332.1 Olea europaea HOM05D003263 ORTHO05D004801 8.0e-12 75.9 58 56.9
PRCOL_00001970 Prasinoderma coloniale HOM05D005521 ORTHO05D017330 4.4e-10 70.1 177 28.8
TAR371G0371 Trochodendron aralioides HOM05D003263 ORTHO05D004801 7.7e-07 59.3 40 65.0


User provided reference genes

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