Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g44269 Chara braunii HOM05D004142 ORTHO05D005411 0.0e+00 1391.7 1007 100.0
Mapoly0043s0054 Marchantia polymorpha HOM05D004142 ORTHO05D005411 4.9e-86 323.9 381 49.1
AagrBONN_evm.TU.Sc2ySwM_228.5327 Anthoceros agrestis HOM05D004142 ORTHO05D005411 1.2e-84 319.3 365 49.9
Pp3c9_12610 Physcomitrium patens HOM05D004142 ORTHO05D005411 6.7e-83 313.5 362 48.3
Potri.009G168100 Populus trichocarpa HOM05D004142 ORTHO05D005411 7.6e-79 300.1 361 48.5
Nn5g31006 Nelumbo nucifera HOM05D004142 ORTHO05D005411 3.8e-78 297.7 361 47.9
TWI75G0433 Tripterygium wilfordii HOM05D004142 ORTHO05D005411 4.9e-78 297.4 362 47.2
TAR633G0693 Trochodendron aralioides HOM05D004142 ORTHO05D005411 8.4e-78 296.6 363 46.8
MD10G1141700 Malus domestica HOM05D004142 ORTHO05D005411 4.2e-77 294.3 380 46.3
Sopen10g027050 Solanum pennellii HOM05D004142 ORTHO05D005411 4.2e-77 294.3 361 47.1
CSS0035317 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 5.5e-77 293.9 381 46.2
Prupe.8G180000 Prunus persica HOM05D004142 ORTHO05D005411 5.5e-77 293.9 361 46.5
Rhsim11G0198100 Rhododendron simsii HOM05D004142 ORTHO05D005411 5.5e-77 293.9 380 44.7
Solyc10g074560.2 Solanum lycopersicum HOM05D004142 ORTHO05D005411 7.1e-77 293.5 374 46.3
Eucgr.G01885 Eucalyptus grandis HOM05D004142 ORTHO05D005411 1.6e-76 292.4 364 47.0
Thecc.02G146100 Theobroma cacao HOM05D004142 ORTHO05D005411 2.1e-76 292.0 377 44.6
Duzib052G0377 Durio zibethinus HOM05D004142 ORTHO05D005411 4.6e-76 290.8 361 45.7
SGA_v2.0_scaffold98G29302 Striga asiatica HOM05D004142 ORTHO05D005411 6.0e-76 290.4 380 44.7
Atru.chr3.3247 Acer truncatum HOM05D004142 ORTHO05D005411 7.9e-76 290.0 380 44.7
Gohir.D13G057300 Gossypium hirsutum HOM05D004142 ORTHO05D005411 7.9e-76 290.0 390 43.6
Gorai.013G064000 Gossypium raimondii HOM05D004142 ORTHO05D005411 7.9e-76 290.0 390 43.6
Lj5C171T17 Lonicera japonica HOM05D004142 ORTHO05D005411 7.9e-76 290.0 361 46.3
Sed0023655 Sechium edule HOM05D004142 ORTHO05D005411 7.9e-76 290.0 364 45.1
Ciclev10028022m.g Citrus clementina HOM05D004142 ORTHO05D005411 1.3e-75 289.3 380 43.9
Cc09_g10830 Coffea canephora HOM05D004142 ORTHO05D005411 1.3e-75 289.3 384 45.1
Gohir.A13G065000 Gossypium hirsutum HOM05D004142 ORTHO05D005411 1.3e-75 289.3 390 43.3
MSTRG.27614 Avicennia marina HOM05D004142 ORTHO05D005411 1.8e-75 288.9 361 45.2
PGR042G3440 Punica granatum HOM05D004142 ORTHO05D005411 1.8e-75 288.9 364 47.0
ATR0807G091 Amborella trichopoda HOM05D004142 ORTHO05D005411 2.3e-75 288.5 361 46.8
CSS0014725 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 2.3e-75 288.5 381 45.1
Dinv14174 Davidia involucrata HOM05D004142 ORTHO05D005411 3.0e-75 288.1 381 44.9
CAN.G765.24 Capsicum annuum HOM05D004142 ORTHO05D005411 3.9e-75 287.7 361 44.9
Haze_02000 Corylus avellana HOM05D004142 ORTHO05D005411 3.9e-75 287.7 390 44.6
CANSAT25G0210 Cannabis sativa HOM05D004142 ORTHO05D005411 8.7e-75 286.6 380 44.2
RcHm_v2.0_Chr6g0280901 Rosa chinensis HOM05D004142 ORTHO05D005411 8.7e-75 286.6 361 44.9
SalBow5G1400 Salvia bowleyana HOM05D004142 ORTHO05D005411 8.7e-75 286.6 379 45.4
SalBow5G4664 Salvia bowleyana HOM05D004142 ORTHO05D005411 8.7e-75 286.6 379 45.4
Atru.chr5.3556 Acer truncatum HOM05D004142 ORTHO05D005411 1.1e-74 286.2 361 46.8
Cfa005371 Carpinus fangiana HOM05D004142 ORTHO05D005411 1.5e-74 285.8 371 45.0
CiPaw.06G115400 Carya illinoinensis HOM05D004142 ORTHO05D005411 1.5e-74 285.8 364 46.2
Ah.05g178840 Amaranthus hybridus HOM05D004142 ORTHO05D005411 1.9e-74 285.4 379 44.9
CsaV3_7G001920 Cucumis sativus L. HOM05D004142 ORTHO05D005411 1.9e-74 285.4 364 45.3
MELO3C013248.2 Cucumis melo HOM05D004142 ORTHO05D005411 2.5e-74 285.0 364 45.3
Nitab4.5_0001700g0140 Nicotiana tabacum HOM05D004142 ORTHO05D005411 2.5e-74 285.0 361 45.7
Peaxi162Scf01986g00004 Petunia axillaris HOM05D004142 ORTHO05D005411 7.4e-74 283.5 361 46.0
EL10Ac9g21530 Beta vulgaris HOM05D004142 ORTHO05D005411 9.6e-74 283.1 363 46.6
Manes.04G066800 Manihot esculenta HOM05D004142 ORTHO05D005411 1.6e-73 282.3 367 45.5
Sc08g0002210 Simmondsia chinensis HOM05D004142 ORTHO05D005411 1.6e-73 282.3 382 43.7
A07p03800 Brassica napus HOM05D004142 ORTHO05D005411 2.1e-73 282.0 361 44.3
Sabra09G0130600 Salix brachista HOM05D004142 ORTHO05D005852 2.1e-73 282.0 361 46.5
Actinidia20577 Actinidia chinensis HOM05D004142 ORTHO05D005411 2.8e-73 281.6 363 45.5
CSS0034003 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 2.8e-73 281.6 380 45.8
FAN24G0393 Fragaria x ananassa HOM05D004142 ORTHO05D005411 2.8e-73 281.6 361 44.9
BraA07t28174Z Brassica rapa HOM05D004142 ORTHO05D005411 3.7e-73 281.2 361 44.0
Aa31LG8G14620 Aethionema arabicum HOM05D004142 ORTHO05D005411 6.2e-73 280.4 361 44.3
BcaB07g31738 Brassica carinata HOM05D004142 ORTHO05D005411 6.2e-73 280.4 361 44.3
FAN15G2670 Fragaria x ananassa HOM05D004142 ORTHO05D005411 6.2e-73 280.4 361 44.9
Os04g0585300 Oryza sativa ssp. japonica HOM05D004142 ORTHO05D005411 8.2e-73 280.0 363 44.9
QL11p056391 Quercus lobata HOM05D004142 ORTHO05D005411 1.1e-72 279.6 372 45.2
A09p11250 Brassica napus HOM05D004142 ORTHO05D005411 1.4e-72 279.3 361 44.3
C09p13280 Brassica napus HOM05D004142 ORTHO05D005411 1.4e-72 279.3 361 44.3
BolC9t54221H Brassica oleracea HOM05D004142 ORTHO05D005411 1.4e-72 279.3 361 44.3
BraA09t36766Z Brassica rapa HOM05D004142 ORTHO05D005411 1.4e-72 279.3 363 44.1
BcaC04g22983 Brassica carinata HOM05D004142 ORTHO05D005411 1.8e-72 278.9 361 44.3
PSO541G0415 Papaver somniferum HOM05D004142 ORTHO05D005411 2.4e-72 278.5 377 43.5
PSO675G0945 Papaver somniferum HOM05D004142 ORTHO05D005411 3.1e-72 278.1 377 43.5
Zm00001eb428130 Zea mays HOM05D004142 ORTHO05D005411 3.1e-72 278.1 365 45.5
Phvul.008G235900 Phaseolus vulgaris HOM05D004142 ORTHO05D005411 6.9e-72 276.9 377 43.8
Hund06363 Selenicereus undatus HOM05D004142 ORTHO05D005411 6.9e-72 276.9 379 44.9
Actinidia17993 Actinidia chinensis HOM05D004142 ORTHO05D005411 9.0e-72 276.6 380 43.4
Nitab4.5_0005657g0020 Nicotiana tabacum HOM05D004142 ORTHO05D005411 9.0e-72 276.6 368 43.2
AL3G50110 Arabidopsis lyrata HOM05D004142 ORTHO05D005411 1.2e-71 276.2 363 44.4
Thhalv10022610m.g Eutrema salsugineum HOM05D004142 ORTHO05D005411 2.0e-71 275.4 361 44.6
Sp3g30590 Schrenkiella parvula HOM05D004142 ORTHO05D005411 2.0e-71 275.4 361 44.0
THA.LOC104819692 Tarenaya hassleriana HOM05D004142 ORTHO05D005411 2.0e-71 275.4 361 44.9
DCAR_005486 Daucus carota HOM05D004142 ORTHO05D005411 2.6e-71 275.0 361 46.0
HanXRQChr09g0239911 Helianthus annuus HOM05D004142 ORTHO05D005411 2.6e-71 275.0 364 44.5
CDE05G3311 Ceratophyllum demersum HOM05D004142 ORTHO05D005411 4.5e-71 274.2 361 44.0
Glyma.14G215500 Glycine max HOM05D004142 ORTHO05D005411 4.5e-71 274.2 380 44.5
Psat2g043640 Pisum sativum HOM05D004142 ORTHO05D005411 5.8e-71 273.9 380 43.7
VMungo0647G1269 Vigna mungo HOM05D004142 ORTHO05D005411 5.8e-71 273.9 377 43.2
Glyma.02G245400 Glycine max HOM05D004142 ORTHO05D005411 1.3e-70 272.7 380 43.4
BcaB03g16472 Brassica carinata HOM05D004142 ORTHO05D005411 3.8e-70 271.2 361 43.2
CAN.G397.37 Capsicum annuum HOM05D004142 ORTHO05D005411 4.9e-70 270.8 367 42.8
HanXRQChr16g0515111 Helianthus annuus HOM05D004142 ORTHO05D005411 8.4e-70 270.0 364 44.0
AT2G17250 Arabidopsis thaliana HOM05D004142 ORTHO05D005411 1.4e-69 269.2 363 43.5
ECA233G5375 Erigeron canadensis HOM05D004142 ORTHO05D005411 1.9e-69 268.9 363 43.0
Medtr5g078780 Medicago truncatula HOM05D004142 ORTHO05D005411 1.9e-69 268.9 364 43.7
Carub.0003s3119 Capsella rubella HOM05D004142 ORTHO05D005411 2.5e-69 268.5 363 43.5
TWI31G1182 Tripterygium wilfordii HOM05D004142 ORTHO05D005411 4.2e-69 267.7 379 43.8
Lsat_1_v5_gn_5_183861 Lactuca sativa HOM05D004142 ORTHO05D005411 5.5e-69 267.3 363 43.3
LjContig00141g0017492 Lotus japonicus HOM05D004142 ORTHO05D005411 7.1e-69 266.9 381 42.5
Lalb_Chr04g0251341 Lupinus albus HOM05D004142 ORTHO05D005411 2.1e-68 265.4 368 43.8
CSS0002990 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 3.5e-68 264.6 361 44.3
CARHR293590 Cardamine hirsuta HOM05D004142 ORTHO05D005411 3.5e-68 264.6 392 40.6
TPR.G8874 Trifolium pratense HOM05D004142 ORTHO05D005411 4.6e-68 264.2 377 43.2
Aqoxy6G01597 Aquilegia oxysepala HOM05D004142 ORTHO05D005411 1.3e-65 256.1 369 41.7
SMO338G0043 Selaginella moellendorffii HOM05D004142 ORTHO05D005411 8.2e-65 253.4 362 42.3
Migut.B01359 Erythranthe guttata HOM05D004142 ORTHO05D005411 1.8e-64 252.3 361 41.3
BcaC06g36246 Brassica carinata HOM05D004142 ORTHO05D005411 2.6e-63 248.4 361 41.6
BolC7t41018H Brassica oleracea HOM05D004142 ORTHO05D005411 2.6e-63 248.4 361 41.6
ClCG02G003400 Citrullus lanatus HOM05D004142 ORTHO05D005411 2.9e-62 245.0 364 42.3
AUR62010174 Chenopodium quinoa HOM05D004142 ORTHO05D005411 3.2e-61 241.5 377 43.2
C07p06050 Brassica napus HOM05D004142 ORTHO05D005411 7.2e-61 240.4 362 41.4
Ca_01556_v3 Cicer arietinum L. HOM05D004142 ORTHO05D005411 1.2e-60 239.6 369 42.3
arahy.Tifrunner.gnm1.ann1.52DH7S Arachis hypogaea HOM05D004142 ORTHO05D005411 1.6e-60 239.2 364 42.6
AUR62013175 Chenopodium quinoa HOM05D004142 ORTHO05D005411 2.3e-59 235.3 352 41.2
COL.COLO4_34310 Corchorus olitorius HOM05D004142 ORTHO05D005411 5.1e-59 234.2 361 41.6
arahy.Tifrunner.gnm1.ann1.0H97XI Arachis hypogaea HOM05D004142 ORTHO05D005411 2.0e-58 232.3 380 41.8
arahy.Tifrunner.gnm1.ann1.FRA838 Arachis hypogaea HOM05D004142 ORTHO05D005411 2.5e-58 231.9 364 42.3
vmacro02340 Vaccinium macrocarpon HOM05D004142 ORTHO05D005411 1.7e-57 229.2 354 39.8
SHI03795 Sapria himalayana HOM05D004142 ORTHO05D005411 9.1e-56 223.4 316 44.0
Cre01.g068377 Chlamydomonas reinhardtii HOM05D004142 ORTHO05D005411 2.6e-55 221.9 378 36.8
FvH4_2g16780 Fragaria vesca HOM05D004142 ORTHO05D005411 9.4e-53 213.4 162 66.7
MD05G1138800 Malus domestica HOM05D004142 ORTHO05D005411 6.7e-51 207.2 380 37.4
Cpa.g.sc60.17 Carica papaya HOM05D004142 ORTHO05D005411 1.7e-49 202.6 324 40.4
PRCOL_00005396 Prasinoderma coloniale HOM05D004142 ORTHO05D005411 3.7e-49 201.4 375 36.5
TAR381G0855 Trochodendron aralioides HOM05D004142 ORTHO05D005411 2.6e-47 195.3 181 56.4
HPP92_025664 Vanilla planifolia HOM05D004142 ORTHO05D005411 1.3e-46 193.0 373 37.5
MD11G1014400 Malus domestica HOM05D004142 ORTHO05D005411 1.6e-44 186.0 139 69.1
MCO08G220 Micromonas commoda HOM05D004142 ORTHO05D005411 1.8e-43 182.6 298 36.2
Oeu037461.1 Olea europaea HOM05D004142 ORTHO05D005411 3.7e-41 174.9 118 73.7
BcaB07g31740 Brassica carinata HOM05D004142 ORTHO05D005411 7.0e-40 170.6 163 57.7
unitig_578.g16758 Utricularia gibba HOM05D004142 ORTHO05D005411 2.7e-36 158.7 263 39.2
Cfa024410 Carpinus fangiana HOM05D004142 ORTHO05D005411 5.7e-34 151.0 160 47.5
SEGI_26341 Sequoiadendron giganteum HOM05D004142 ORTHO05D005411 1.1e-32 146.7 107 68.2
ECA246G3488 Erigeron canadensis HOM05D004142 ORTHO05D005411 9.1e-32 143.7 341 30.8
AagrBONN_evm.TU.Sc2ySwM_228.5300 Anthoceros agrestis HOM05D004142 ORTHO05D005411 8.8e-27 127.1 111 59.5
Zm00001eb152690 Zea mays HOM05D004142 ORTHO05D000502 2.8e-25 122.1 108 57.4
SEGI_03267 Sequoiadendron giganteum HOM05D004142 ORTHO05D005411 2.4e-24 119.0 97 56.7
SEGI_12604 Sequoiadendron giganteum HOM05D004142 ORTHO05D005411 9.1e-24 117.1 97 55.7
Oeu037462.1 Olea europaea HOM05D004142 ORTHO05D005411 2.3e-22 112.5 79 68.4
AagrBONN_evm.TU.Sc2ySwM_228.5299 Anthoceros agrestis HOM05D004142 ORTHO05D005411 5.5e-21 107.8 89 56.2
Hma1.2p1_0796F.1_g219330 Hydrangea macrophylla HOM05D004142 ORTHO05D005411 1.8e-19 102.8 100 47.0
Zm00001eb177550 Zea mays HOM05D004142 ORTHO05D005411 4.0e-19 101.7 87 63.2
Zm00001eb282240 Zea mays HOM05D004142 ORTHO05D005411 8.9e-19 100.5 87 63.2
FAN27G1246 Fragaria x ananassa HOM05D004142 ORTHO05D005411 3.5e-15 88.6 67 68.7
TPR.G40409 Trifolium pratense HOM05D004142 ORTHO05D005411 1.5e-13 83.2 65 61.5
Zm00001eb112060 Zea mays HOM05D004142 ORTHO05D005983 1.9e-13 82.8 130 43.1
Eucgr.H04983 Eucalyptus grandis HOM05D004142 ORTHO05D005411 4.3e-13 81.6 68 57.4
Hma1.2p1_0151F.1_g067370 Hydrangea macrophylla HOM05D004142 ORTHO05D005411 5.6e-13 81.3 59 72.9
Lsat_1_v5_gn_5_64620 Lactuca sativa HOM05D004142 ORTHO05D005411 7.3e-13 80.9 59 71.2
Medtr5g078810 Medicago truncatula HOM05D004142 ORTHO05D005411 1.3e-09 70.1 55 65.5
Zm00001eb028530 Zea mays HOM05D004142 ORTHO05D000502 2.3e-06 59.3 101 38.6


User provided reference genes

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