Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g4353 Chara braunii HOM05D005068 ORTHO05D007561 0.0e+00 2267.3 1328 100.0
Pp3c8_7540 Physcomitrium patens HOM05D005068 ORTHO05D007561 1.1e-179 635.2 1071 43.2
AagrBONN_evm.TU.Sc2ySwM_228.3616 Anthoceros agrestis HOM05D005068 ORTHO05D007561 2.5e-174 617.5 857 46.7
SEGI_35987 Sequoiadendron giganteum HOM05D005068 ORTHO05D007561 5.1e-164 583.2 1140 37.5
ATR0317G028 Amborella trichopoda HOM05D005068 ORTHO05D007561 2.0e-160 571.2 1016 40.1
Mapoly0001s0039 Marchantia polymorpha HOM05D005068 ORTHO05D007561 1.3e-159 568.5 1160 36.5
Glyma.07G043700 Glycine max HOM05D005068 ORTHO05D007561 8.2e-154 549.3 912 41.4
Sed0003275 Sechium edule HOM05D005068 ORTHO05D007561 1.1e-153 548.9 939 39.4
MD17G1151100 Malus domestica HOM05D005068 ORTHO05D007561 2.0e-152 544.7 932 40.5
Cc04_g00890 Coffea canephora HOM05D005068 ORTHO05D007561 4.5e-152 543.5 853 41.0
Solyc03g123530.4 Solanum lycopersicum HOM05D005068 ORTHO05D007561 5.9e-152 543.1 1062 38.0
Sed0017975 Sechium edule HOM05D005068 ORTHO05D007561 7.7e-152 542.7 914 39.4
CSS0048439 Camellia sinensis var. sinensis HOM05D005068 ORTHO05D007561 1.0e-151 542.3 989 38.5
CsaV3_7G034120 Cucumis sativus L. HOM05D005068 ORTHO05D007561 3.8e-151 540.4 905 41.8
PSO339G5314 Papaver somniferum HOM05D005068 ORTHO05D007561 1.5e-150 538.5 897 41.2
Lj3g0023295 Lotus japonicus HOM05D005068 ORTHO05D007561 1.9e-150 538.1 856 41.1
TAR628G1511 Trochodendron aralioides HOM05D005068 ORTHO05D007561 2.5e-150 537.7 974 39.0
Manes.09G018800 Manihot esculenta HOM05D005068 ORTHO05D007561 4.2e-150 537.0 903 39.1
PSO384G5027 Papaver somniferum HOM05D005068 ORTHO05D007561 4.2e-150 537.0 1092 37.8
Prupe.3G034700 Prunus persica HOM05D005068 ORTHO05D007561 5.5e-150 536.6 881 40.6
RcHm_v2.0_Chr2g0147011 Rosa chinensis HOM05D005068 ORTHO05D007561 7.2e-150 536.2 917 39.9
CSS0009347 Camellia sinensis var. sinensis HOM05D005068 ORTHO05D007561 9.4e-150 535.8 1128 35.9
TWI59G1220 Tripterygium wilfordii HOM05D005068 ORTHO05D007561 3.6e-149 533.9 914 39.4
CiPaw.01G213900 Carya illinoinensis HOM05D005068 ORTHO05D007561 8.0e-149 532.7 915 40.1
Psat2g016360 Pisum sativum HOM05D005068 ORTHO05D007561 1.4e-148 531.9 932 39.8
CAN.G790.67 Capsicum annuum HOM05D005068 ORTHO05D007561 1.8e-148 531.6 1107 36.4
Gorai.011G056800 Gossypium raimondii HOM05D005068 ORTHO05D007561 1.8e-148 531.6 855 40.6
QL05p001958 Quercus lobata HOM05D005068 ORTHO05D007561 1.8e-148 531.6 901 40.0
Gohir.A10G051500 Gossypium hirsutum HOM05D005068 ORTHO05D007561 3.9e-148 530.4 840 41.2
Nitab4.5_0009947g0020 Nicotiana tabacum HOM05D005068 ORTHO05D007561 3.9e-148 530.4 922 40.5
Lalb_Chr04g0253821 Lupinus albus HOM05D005068 ORTHO05D007561 6.7e-148 529.6 904 39.5
MELO3C024322.2 Cucumis melo HOM05D005068 ORTHO05D007561 2.6e-147 527.7 919 39.1
VMungo0331G1431 Vigna mungo HOM05D005068 ORTHO05D007561 4.4e-147 526.9 904 39.0
EL10Ac7g16459 Beta vulgaris HOM05D005068 ORTHO05D007561 9.7e-147 525.8 967 38.3
Phvul.010G125200 Phaseolus vulgaris HOM05D005068 ORTHO05D007561 1.7e-146 525.0 1110 36.3
Carub.0002s1929 Capsella rubella HOM05D005068 ORTHO05D007561 2.8e-146 524.2 831 40.9
SalBow6G5915 Salvia bowleyana HOM05D005068 ORTHO05D007561 2.8e-146 524.2 905 39.1
MD09G1175700 Malus domestica HOM05D005068 ORTHO05D007561 4.8e-146 523.5 1093 38.2
Aqoxy1G00349 Aquilegia oxysepala HOM05D005068 ORTHO05D007561 6.3e-146 523.1 998 37.1
Medtr5g019130 Medicago truncatula HOM05D005068 ORTHO05D007561 6.3e-146 523.1 853 41.0
Nitab4.5_0003981g0040 Nicotiana tabacum HOM05D005068 ORTHO05D007561 6.3e-146 523.1 1082 36.6
Gohir.D10G053200 Gossypium hirsutum HOM05D005068 ORTHO05D007561 8.2e-146 522.7 1043 37.9
FvH4_6g35460 Fragaria vesca HOM05D005068 ORTHO05D007561 3.1e-145 520.8 909 41.4
FAN14G5424 Fragaria x ananassa HOM05D005068 ORTHO05D007561 3.1e-145 520.8 908 41.3
AUR62009935 Chenopodium quinoa HOM05D005068 ORTHO05D007561 7.0e-145 519.6 770 42.3
Hund18654 Selenicereus undatus HOM05D005068 ORTHO05D007561 9.1e-145 519.2 1061 38.8
FAN05G3041 Fragaria x ananassa HOM05D005068 ORTHO05D007561 1.0e-143 515.8 912 39.8
TPR.G16658 Trifolium pratense HOM05D005068 ORTHO05D007561 1.3e-143 515.4 910 39.9
AL2G32110 Arabidopsis lyrata HOM05D005068 ORTHO05D007561 2.2e-143 514.6 1067 35.9
arahy.Tifrunner.gnm1.ann1.JS5XG8 Arachis hypogaea HOM05D005068 ORTHO05D007561 2.2e-143 514.6 983 36.8
HanXRQChr12g0360151 Helianthus annuus HOM05D005068 ORTHO05D007561 6.5e-143 513.1 887 40.2
Peaxi162Scf00038g02247 Petunia axillaris HOM05D005068 ORTHO05D007561 6.5e-143 513.1 920 39.1
PGR102G2847 Punica granatum HOM05D005068 ORTHO05D007561 8.5e-143 512.7 956 38.9
Os09g0116400 Oryza sativa ssp. japonica HOM05D005068 ORTHO05D007561 1.1e-142 512.3 935 39.5
GSVIVG01016696001 Vitis vinifera HOM05D005068 ORTHO05D007561 1.5e-142 511.9 1081 37.2
Potri.001G164100 Populus trichocarpa HOM05D005068 ORTHO05D007561 1.9e-142 511.5 941 37.4
Peaxi162Scf00535g00325 Petunia axillaris HOM05D005068 ORTHO05D007561 1.6e-141 508.4 879 39.6
Zm00001eb008900 Zea mays HOM05D005068 ORTHO05D007561 2.7e-141 507.7 938 38.1
CDE05G0629 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 3.6e-141 507.3 915 37.6
CARHR065370 Cardamine hirsuta HOM05D005068 ORTHO05D007561 1.4e-140 505.4 861 40.3
MBI13_g01677_MAGBIO Magnolia biondii HOM05D005068 ORTHO05D007561 1.4e-140 505.4 802 40.5
Ca_30848_v3 Cicer arietinum L. HOM05D005068 ORTHO05D007561 3.0e-140 504.2 823 41.6
Sopen03g041300 Solanum pennellii HOM05D005068 ORTHO05D007561 3.0e-140 504.2 1074 37.0
AUR62001432 Chenopodium quinoa HOM05D005068 ORTHO05D007561 5.2e-140 503.4 885 39.8
Thecc.06G127400 Theobroma cacao HOM05D005068 ORTHO05D007561 6.8e-140 503.1 851 39.8
Atru.chr1.4129 Acer truncatum HOM05D005068 ORTHO05D007561 1.2e-139 502.3 1058 36.3
Ciclev10024779m.g Citrus clementina HOM05D005068 ORTHO05D007561 1.2e-139 502.3 1063 35.3
unitig_26.g8921 Utricularia gibba HOM05D005068 ORTHO05D007561 2.6e-139 501.1 918 38.1
Medtr4g119670 Medicago truncatula HOM05D005068 ORTHO05D007561 4.4e-139 500.4 902 38.8
ECA234G0903 Erigeron canadensis HOM05D005068 ORTHO05D007561 7.5e-139 499.6 931 37.4
AT1G72440 Arabidopsis thaliana HOM05D005068 ORTHO05D007561 9.7e-139 499.2 1099 35.8
MSTRG.22527 Avicennia marina HOM05D005068 ORTHO05D007561 4.8e-138 496.9 942 38.3
CANSAT01G1537 Cannabis sativa HOM05D005068 ORTHO05D007561 8.3e-138 496.1 882 39.1
Ca_23422_v3 Cicer arietinum L. HOM05D005068 ORTHO05D007561 1.8e-137 495.0 906 39.6
BcaB03g14995 Brassica carinata HOM05D005068 ORTHO05D007561 4.1e-137 493.8 869 40.2
HPP92_014041 Vanilla planifolia HOM05D005068 ORTHO05D007561 3.5e-136 490.7 1041 35.8
Eucgr.J02606 Eucalyptus grandis HOM05D005068 ORTHO05D007561 7.7e-136 489.6 997 35.6
Oeu000383.1 Olea europaea HOM05D005068 ORTHO05D007561 7.7e-136 489.6 1035 35.7
Sp5g27520 Schrenkiella parvula HOM05D005068 ORTHO05D007561 2.9e-135 487.6 1109 35.6
Glyma.16G012100 Glycine max HOM05D005068 ORTHO05D007561 4.2e-134 483.8 968 37.4
Lsat_1_v5_gn_5_136720 Lactuca sativa HOM05D005068 ORTHO05D007561 9.4e-134 482.6 902 37.9
Sabra01G0128700 Salix brachista HOM05D005068 ORTHO05D007561 4.7e-133 480.3 887 38.8
THA.LOC104808063 Tarenaya hassleriana HOM05D005068 ORTHO05D007561 8.0e-133 479.6 1102 34.3
FAN09G4827 Fragaria x ananassa HOM05D005068 ORTHO05D007561 1.4e-132 478.8 909 40.2
C06p46800 Brassica napus HOM05D005068 ORTHO05D007561 1.8e-132 478.4 973 38.6
Lj5A31T61 Lonicera japonica HOM05D005068 ORTHO05D007561 4.0e-132 477.2 798 39.6
Thhalv10018056m.g Eutrema salsugineum HOM05D005068 ORTHO05D007561 5.2e-132 476.9 1064 34.8
BcaC08g46695 Brassica carinata HOM05D005068 ORTHO05D007561 6.8e-132 476.5 968 38.6
DCAR_026429 Daucus carota HOM05D005068 ORTHO05D007561 6.8e-132 476.5 931 37.4
BolC6t39723H Brassica oleracea HOM05D005068 ORTHO05D007561 1.5e-131 475.3 982 38.3
Nitab4.5_0007072g0030 Nicotiana tabacum HOM05D005068 ORTHO05D007561 2.8e-130 471.1 789 40.7
Cpa.g.sc25.173 Carica papaya HOM05D005068 ORTHO05D007561 3.5e-128 464.2 1294 31.7
Cfa003490 Carpinus fangiana HOM05D005068 ORTHO05D007561 1.5e-126 458.8 1283 32.5
arahy.Tifrunner.gnm1.ann1.X03KN2 Arachis hypogaea HOM05D005068 ORTHO05D007561 4.2e-126 457.2 972 35.1
BraA07t31420Z Brassica rapa HOM05D005068 ORTHO05D007561 5.5e-126 456.8 979 36.9
Rhsim08G0242500 Rhododendron simsii HOM05D005068 ORTHO05D007561 6.8e-124 449.9 907 38.3
Aa31LG4G2770 Aethionema arabicum HOM05D005068 ORTHO05D007561 6.3e-122 443.4 886 36.9
ClCG09G001250 Citrullus lanatus HOM05D005068 ORTHO05D007561 8.3e-122 443.0 906 38.2
Nn8g38536 Nelumbo nucifera HOM05D005068 ORTHO05D007561 6.1e-117 426.8 915 36.3
SMO356G0436 Selaginella moellendorffii HOM05D005068 ORTHO05D007561 3.1e-116 424.5 1073 32.7
Actinidia21819 Actinidia chinensis HOM05D005068 ORTHO05D007561 6.8e-116 423.3 887 36.3
Cre10.g459600 Chlamydomonas reinhardtii HOM05D005068 ORTHO05D007561 5.8e-115 420.2 1017 35.1
vmacro14086 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 7.5e-115 419.9 674 40.5
vmacro15071 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 8.3e-114 416.4 876 35.5
SGA_v2.0_scaffold71G23904 Striga asiatica HOM05D005068 ORTHO05D007561 1.8e-108 398.7 959 33.5
COL.COLO4_30833 Corchorus olitorius HOM05D005068 ORTHO05D007561 1.2e-107 396.0 470 45.7
FAN02G4153 Fragaria x ananassa HOM05D005068 ORTHO05D007561 3.4e-107 394.4 502 46.2
Haze_16103 Corylus avellana HOM05D005068 ORTHO05D007561 9.2e-105 386.3 1395 29.8
TAR383G0209 Trochodendron aralioides HOM05D005068 ORTHO05D007561 3.4e-99 367.9 862 34.3
SHI38508 Sapria himalayana HOM05D005068 ORTHO05D007561 1.3e-98 365.9 873 33.4
A07p38620 Brassica napus HOM05D005068 ORTHO05D007561 6.2e-85 320.5 534 39.0
PRCOL_00007240 Prasinoderma coloniale HOM05D005068 ORTHO05D007561 6.4e-82 310.5 803 32.9
Migut.I01119 Erythranthe guttata HOM05D005068 ORTHO05D007561 2.1e-80 305.4 905 30.9
Dinv37834 Davidia involucrata HOM05D005068 ORTHO05D007561 4.6e-80 304.3 379 46.7
CDE11G1047 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 1.7e-79 302.4 674 35.2
Sc12g0010810 Simmondsia chinensis HOM05D005068 ORTHO05D007561 3.9e-79 301.2 552 36.6
PGSC0003DMG400009145 Solanum tuberosum HOM05D005068 ORTHO05D007561 1.9e-73 282.3 604 37.9
ECA234G3781 Erigeron canadensis HOM05D005068 ORTHO05D007561 3.5e-72 278.1 871 30.3
Cfa026526 Carpinus fangiana HOM05D005068 ORTHO05D007561 1.0e-63 250.0 827 28.8
Dinv37835 Davidia involucrata HOM05D005068 ORTHO05D007561 2.4e-52 212.2 423 35.5
CDE11G0362 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 1.1e-49 203.4 251 45.8
Cc00_g06320 Coffea canephora HOM05D005068 ORTHO05D007561 2.3e-31 142.5 216 41.7
Psat7g194920 Pisum sativum HOM05D005068 ORTHO05D030493 2.3e-31 142.5 213 44.6
SHI25215 Sapria himalayana HOM05D005068 ORTHO05D007561 2.6e-30 139.0 483 27.7
TAR383G0400 Trochodendron aralioides HOM05D005068 ORTHO05D007561 7.5e-30 137.5 249 36.5
Haze_25369 Corylus avellana HOM05D005068 ORTHO05D007561 3.1e-28 132.1 228 34.6
FAN23G2170 Fragaria x ananassa HOM05D005068 ORTHO05D007561 2.1e-24 119.4 175 44.0
Hund18058 Selenicereus undatus HOM05D005068 ORTHO05D030493 1.1e-20 107.1 159 45.3
Psat7g194960 Pisum sativum HOM05D005068 ORTHO05D030493 5.5e-17 94.7 157 41.4
Psat4g066440 Pisum sativum HOM05D005068 ORTHO05D030493 6.1e-16 91.3 89 52.8
Sc16g0005100 Simmondsia chinensis HOM05D005068 ORTHO05D014954 2.3e-10 72.8 47 70.2
HanXRQChr04g0122031 Helianthus annuus HOM05D005068 ORTHO05D007561 6.6e-10 71.2 130 32.3
MSTRG.13912 Avicennia marina HOM05D005068 ORTHO05D019833 3.6e-08 65.5 242 31.4
COL.COLO4_30832 Corchorus olitorius HOM05D005068 ORTHO05D014954 3.4e-06 58.9 36 75.0


User provided reference genes

Program Settings