Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g41676 Chara braunii HOM05D005470 ORTHO05D006855 6.4e-202 707.2 361 100.0
SEGI_32261 Sequoiadendron giganteum HOM05D005470 ORTHO05D006855 4.9e-85 318.9 351 49.6
Pp3c24_12730 Physcomitrium patens HOM05D005470 ORTHO05D006855 3.2e-84 316.2 351 49.9
MD10G1166100 Malus domestica HOM05D005470 ORTHO05D006855 5.4e-84 315.5 352 50.3
Sed0016487 Sechium edule HOM05D005470 ORTHO05D006855 1.6e-83 313.9 351 50.7
CDE01G0096 Ceratophyllum demersum HOM05D005470 ORTHO05D006855 2.1e-83 313.5 351 48.1
Eucgr.H00804 Eucalyptus grandis HOM05D005470 ORTHO05D006855 2.7e-83 313.2 351 49.9
Hma1.2p1_1061F.1_g253380 Hydrangea macrophylla HOM05D005470 ORTHO05D006855 3.5e-83 312.8 351 50.7
Lj2A1133T34 Lonicera japonica HOM05D005470 ORTHO05D006855 6.0e-83 312.0 352 48.6
PSO017G3643 Papaver somniferum HOM05D005470 ORTHO05D006855 6.0e-83 312.0 354 48.3
Mapoly0006s0023 Marchantia polymorpha HOM05D005470 ORTHO05D006855 7.8e-83 311.6 351 50.4
ClCG07G001860 Citrullus lanatus HOM05D005470 ORTHO05D006855 2.3e-82 310.1 352 48.3
Migut.D00523 Erythranthe guttata HOM05D005470 ORTHO05D006855 3.0e-82 309.7 354 48.3
Duzib211G0062 Durio zibethinus HOM05D005470 ORTHO05D006855 5.1e-82 308.9 351 48.4
FvH4_2g19300 Fragaria vesca HOM05D005470 ORTHO05D006855 8.7e-82 308.1 352 47.7
Hund18358 Selenicereus undatus HOM05D005470 ORTHO05D006855 8.7e-82 308.1 352 48.3
FAN24G1307 Fragaria x ananassa HOM05D005470 ORTHO05D006855 1.1e-81 307.8 352 47.7
THA.LOC104802678 Tarenaya hassleriana HOM05D005470 ORTHO05D006855 1.1e-81 307.8 353 48.2
Nn3g19926 Nelumbo nucifera HOM05D005470 ORTHO05D006855 1.5e-81 307.4 352 48.0
QL03p049466 Quercus lobata HOM05D005470 ORTHO05D006855 1.5e-81 307.4 352 48.3
BraA06t26801Z Brassica rapa HOM05D005470 ORTHO05D006855 1.9e-81 307.0 354 49.2
Lsat_1_v5_gn_8_90101 Lactuca sativa HOM05D005470 ORTHO05D006855 1.9e-81 307.0 356 48.6
Thecc.01G227800 Theobroma cacao HOM05D005470 ORTHO05D006855 1.9e-81 307.0 351 47.0
CsaV3_3G028840 Cucumis sativus L. HOM05D005470 ORTHO05D006855 2.5e-81 306.6 351 49.3
PSO478G2025 Papaver somniferum HOM05D005470 ORTHO05D006855 2.5e-81 306.6 354 47.5
SMO144G0038 Selaginella moellendorffii HOM05D005470 ORTHO05D006855 2.5e-81 306.6 351 48.7
Haze_24781 Corylus avellana HOM05D005470 ORTHO05D006855 4.3e-81 305.8 352 48.3
HanXRQChr04g0110691 Helianthus annuus HOM05D005470 ORTHO05D006855 4.3e-81 305.8 352 48.6
Nitab4.5_0000866g0040 Nicotiana tabacum HOM05D005470 ORTHO05D006855 4.3e-81 305.8 351 48.7
Aa31sc866G40 Aethionema arabicum HOM05D005470 ORTHO05D006855 5.6e-81 305.4 351 48.1
MSTRG.21429 Avicennia marina HOM05D005470 ORTHO05D006855 5.6e-81 305.4 353 48.4
Gohir.A07G156000 Gossypium hirsutum HOM05D005470 ORTHO05D006855 7.3e-81 305.1 351 46.7
Gohir.D07G162300 Gossypium hirsutum HOM05D005470 ORTHO05D006855 7.3e-81 305.1 351 46.7
Gorai.001G185900 Gossypium raimondii HOM05D005470 ORTHO05D006855 7.3e-81 305.1 351 46.7
Actinidia37584 Actinidia chinensis HOM05D005470 ORTHO05D006855 1.3e-80 304.3 352 50.3
Cc01_g17220 Coffea canephora HOM05D005470 ORTHO05D006855 1.3e-80 304.3 352 48.6
Nitab4.5_0003790g0040 Nicotiana tabacum HOM05D005470 ORTHO05D006855 1.3e-80 304.3 351 48.7
Nitab4.5_0000866g0080 Nicotiana tabacum HOM05D005470 ORTHO05D006855 1.6e-80 303.9 351 48.4
arahy.Tifrunner.gnm1.ann1.KE0QUS Arachis hypogaea HOM05D005470 ORTHO05D006855 2.8e-80 303.1 359 46.8
Thhalv10004618m.g Eutrema salsugineum HOM05D005470 ORTHO05D006855 3.6e-80 302.8 355 48.2
SMO351G0371 Selaginella moellendorffii HOM05D005470 ORTHO05D006855 3.6e-80 302.8 353 47.6
Sp2g19240 Schrenkiella parvula HOM05D005470 ORTHO05D006855 4.8e-80 302.4 355 47.9
Aqoxy2G03764 Aquilegia oxysepala HOM05D005470 ORTHO05D006855 6.2e-80 302.0 351 48.1
EL10Ac7g17787 Beta vulgaris HOM05D005470 ORTHO05D006855 6.2e-80 302.0 354 48.0
Potri.002G240800 Populus trichocarpa HOM05D005470 ORTHO05D006855 6.2e-80 302.0 351 47.3
Migut.I00044 Erythranthe guttata HOM05D005470 ORTHO05D006855 8.1e-80 301.6 353 48.4
MELO3C026704.2 Cucumis melo HOM05D005470 ORTHO05D006855 1.1e-79 301.2 351 48.4
Sabra02G0183400 Salix brachista HOM05D005470 ORTHO05D006855 1.8e-79 300.4 351 47.3
PGSC0003DMG400002375 Solanum tuberosum HOM05D005470 ORTHO05D006855 1.8e-79 300.4 351 48.4
VMungo0516G0001 Vigna mungo HOM05D005470 ORTHO05D006855 2.4e-79 300.1 358 47.5
ATR0736G181 Amborella trichopoda HOM05D005470 ORTHO05D006855 3.1e-79 299.7 351 46.7
AL8G22020 Arabidopsis lyrata HOM05D005470 ORTHO05D006855 4.0e-79 299.3 352 47.4
CiPaw.04G106400 Carya illinoinensis HOM05D005470 ORTHO05D006855 4.0e-79 299.3 352 47.7
Glyma.18G172500 Glycine max HOM05D005470 ORTHO05D006855 4.0e-79 299.3 357 47.3
Atru.chr5.1498 Acer truncatum HOM05D005470 ORTHO05D006855 5.3e-79 298.9 352 47.2
BcaC06g30753 Brassica carinata HOM05D005470 ORTHO05D006855 5.3e-79 298.9 354 48.3
CsaV3_6G036910 Cucumis sativus L. HOM05D005470 ORTHO05D006855 5.3e-79 298.9 351 48.7
RcHm_v2.0_Chr6g0285101 Rosa chinensis HOM05D005470 ORTHO05D006855 5.3e-79 298.9 352 46.3
SGA_v2.0_scaffold8G04652 Striga asiatica HOM05D005470 ORTHO05D006855 5.3e-79 298.9 350 48.9
Sopen09g024670 Solanum pennellii HOM05D005470 ORTHO05D006855 6.9e-79 298.5 351 48.4
TAR365G1033 Trochodendron aralioides HOM05D005470 ORTHO05D006855 6.9e-79 298.5 352 45.7
AUR62031834 Chenopodium quinoa HOM05D005470 ORTHO05D006855 1.2e-78 297.7 354 48.0
vmacro02749 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 3.4e-78 296.2 358 47.2
AT5G48840 Arabidopsis thaliana HOM05D005470 ORTHO05D006855 4.5e-78 295.8 352 46.6
arahy.Tifrunner.gnm1.ann1.07T9WF Arachis hypogaea HOM05D005470 ORTHO05D006855 4.5e-78 295.8 359 45.4
arahy.Tifrunner.gnm1.ann1.4GE7F8 Arachis hypogaea HOM05D005470 ORTHO05D006855 4.5e-78 295.8 352 47.4
BolC7t44465H Brassica oleracea HOM05D005470 ORTHO05D006855 4.5e-78 295.8 354 46.6
Solyc09g061680.3 Solanum lycopersicum HOM05D005470 ORTHO05D006855 4.5e-78 295.8 351 48.1
DCAR_018553 Daucus carota HOM05D005470 ORTHO05D006855 5.8e-78 295.4 346 47.1
Manes.12G042650 Manihot esculenta HOM05D005470 ORTHO05D006855 5.8e-78 295.4 351 47.0
C07p39460 Brassica napus HOM05D005470 ORTHO05D006855 7.6e-78 295.0 354 47.7
PGR083G1301 Punica granatum HOM05D005470 ORTHO05D006855 7.6e-78 295.0 353 46.5
CAN.G1273.33 Capsicum annuum HOM05D005470 ORTHO05D006855 1.3e-77 294.3 352 46.9
Phvul.007G209400 Phaseolus vulgaris HOM05D005470 ORTHO05D006855 1.3e-77 294.3 352 47.2
CSS0013378 Camellia sinensis var. sinensis HOM05D005470 ORTHO05D006855 1.7e-77 293.9 351 47.6
Zm00001eb064670 Zea mays HOM05D005470 ORTHO05D006855 3.8e-77 292.7 354 48.6
Dinv04663 Davidia involucrata HOM05D005470 ORTHO05D006855 6.4e-77 292.0 344 48.3
Ah.08g214020 Amaranthus hybridus HOM05D005470 ORTHO05D006855 8.4e-77 291.6 379 45.9
Ciclev10021316m.g Citrus clementina HOM05D005470 ORTHO05D006855 8.4e-77 291.6 344 48.5
TWI75G1873 Tripterygium wilfordii HOM05D005470 ORTHO05D006855 8.4e-77 291.6 352 46.9
CARHR182880 Cardamine hirsuta HOM05D005470 ORTHO05D006855 1.1e-76 291.2 352 46.0
Lj1g0018515 Lotus japonicus HOM05D005470 ORTHO05D006855 1.4e-76 290.8 351 46.4
Oeu015466.1 Olea europaea HOM05D005470 ORTHO05D006855 1.9e-76 290.4 351 45.9
Sc17g0002580 Simmondsia chinensis HOM05D005470 ORTHO05D006855 2.4e-76 290.0 351 48.1
Cpa.g.sc8.172 Carica papaya HOM05D005470 ORTHO05D006855 3.2e-76 289.7 352 46.0
Lalb_Chr19g0125551 Lupinus albus HOM05D005470 ORTHO05D006855 5.4e-76 288.9 352 45.7
Os03g0851800 Oryza sativa ssp. japonica HOM05D005470 ORTHO05D006855 5.4e-76 288.9 355 47.0
Rhsim13G0044300 Rhododendron simsii HOM05D006020 ORTHO05D006855 1.6e-75 287.3 341 47.5
Ca_07533_v3 Cicer arietinum L. HOM05D005470 ORTHO05D006855 2.1e-75 287.0 355 46.2
Peaxi162Scf00107g01116 Petunia axillaris HOM05D005470 ORTHO05D006855 2.1e-75 287.0 351 46.7
HPP92_021568 Vanilla planifolia HOM05D005470 ORTHO05D006855 2.7e-75 286.6 351 47.6
Carub.0008s0857 Capsella rubella HOM05D005470 ORTHO05D006855 3.5e-75 286.2 352 45.7
Medtr7g058920 Medicago truncatula HOM05D005470 ORTHO05D006855 7.9e-75 285.0 351 46.4
Psat3g144240 Pisum sativum HOM05D005470 ORTHO05D006855 1.8e-74 283.9 354 46.0
CANSAT56G1556 Cannabis sativa HOM05D005470 ORTHO05D006855 2.3e-74 283.5 362 44.8
GSVIVG01028578001 Vitis vinifera HOM05D005470 ORTHO05D006855 3.3e-73 279.6 354 43.8
TPR.G15281 Trifolium pratense HOM05D005470 ORTHO05D006855 2.8e-72 276.6 351 44.7
Prupe.8G204600 Prunus persica HOM05D005470 ORTHO05D006855 1.3e-69 267.7 316 48.4
A06p38870 Brassica napus HOM05D006020 ORTHO05D007665 2.1e-67 260.4 318 48.1
BcaC06g30729 Brassica carinata HOM05D005470 ORTHO05D006855 3.5e-67 259.6 319 47.3
MBI07_g00286_MAGBIO Magnolia biondii HOM05D004483 ORTHO05D005609 1.3e-66 257.7 383 41.3
Cfa002558 Carpinus fangiana HOM05D005470 ORTHO05D006855 2.5e-65 253.4 352 41.8
MCO10G244 Micromonas commoda HOM05D005470 ORTHO05D006855 2.5e-65 253.4 362 46.1
SEGI_26814 Sequoiadendron giganteum HOM05D005470 ORTHO05D006855 5.3e-63 245.7 279 49.5
Hma1.2p1_1061F.1_g253390 Hydrangea macrophylla HOM05D005470 ORTHO05D006855 2.9e-61 240.0 279 48.7
TAR365G0091 Trochodendron aralioides HOM05D005470 ORTHO05D006855 9.6e-57 224.9 269 44.6
ECA236G4489 Erigeron canadensis HOM05D005470 ORTHO05D006855 3.4e-54 216.5 182 60.4
SHI28627 Sapria himalayana HOM05D005470 ORTHO05D006855 1.3e-53 214.5 342 39.2
AUR62008875 Chenopodium quinoa HOM05D005470 ORTHO05D006855 3.0e-50 203.4 326 40.5
Cre02.g090150 Chlamydomonas reinhardtii HOM05D005470 ORTHO05D006855 2.2e-48 197.2 253 47.0
CANSAT01G1736 Cannabis sativa HOM05D005470 ORTHO05D006855 3.1e-47 193.4 190 52.1
Nn1g07785 Nelumbo nucifera HOM05D005470 ORTHO05D006855 1.9e-44 184.1 227 44.5
Atru.chr5.2014 Acer truncatum HOM05D005470 ORTHO05D006855 5.9e-38 162.5 230 43.0
Haze_26957 Corylus avellana HOM05D005470 ORTHO05D006855 3.8e-37 159.8 340 35.3
vmacro15783 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 3.6e-35 153.3 149 55.0
Cfa025604 Carpinus fangiana HOM05D005470 ORTHO05D006855 5.7e-33 146.0 343 34.1
HanXRQChr16g0514371 Helianthus annuus HOM05D005470 ORTHO05D006855 2.0e-30 137.5 202 39.1
TAR636G1319 Trochodendron aralioides HOM05D005470 ORTHO05D006855 2.0e-25 120.9 185 38.9
unitig_92.g28105 Utricularia gibba HOM05D005470 ORTHO05D006855 5.9e-22 109.4 123 50.4
unitig_92.g28106 Utricularia gibba HOM05D005470 ORTHO05D006855 5.0e-21 106.3 101 51.5
Glyma.08G355700 Glycine max HOM05D005470 ORTHO05D006855 3.0e-18 97.1 181 36.5
vmacro15781 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 2.0e-17 94.4 109 46.8
vmacro23327 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 2.2e-16 90.9 231 35.5
MD05G1177900 Malus domestica HOM05D005470 ORTHO05D006855 7.7e-14 82.4 163 37.4
CsaV3_1G001100 Cucumis sativus L. HOM05D005470 ORTHO05D006855 5.0e-13 79.7 67 65.7
SEGI_11949 Sequoiadendron giganteum HOM05D005470 ORTHO05D006855 5.0e-13 79.7 193 31.1
arahy.Tifrunner.gnm1.ann1.K5YBAW Arachis hypogaea HOM05D005470 ORTHO05D006855 1.9e-12 77.8 121 41.3
arahy.Tifrunner.gnm1.ann1.M1HUIQ Arachis hypogaea HOM05D005470 ORTHO05D006855 1.6e-11 74.7 120 40.0
FAN15G3610 Fragaria x ananassa HOM05D005470 ORTHO05D006855 8.8e-10 68.9 70 45.7
MD05G1178000 Malus domestica HOM05D005470 ORTHO05D006855 3.4e-09 67.0 61 49.2
Nn1g07786 Nelumbo nucifera HOM05D005470 ORTHO05D006855 9.8e-09 65.5 81 39.5
CAN.G122.7 Capsicum annuum HOM05D005470 ORTHO05D006855 4.9e-08 63.2 108 35.2
COL.COLO4_06654 Corchorus olitorius HOM05D005470 ORTHO05D006855 3.1e-07 60.5 49 51.0
MELO3C014350.2 Cucumis melo HOM05D005470 ORTHO05D006855 2.7e-06 57.4 59 55.9
CSS0038259 Camellia sinensis var. sinensis HOM05D005470 ORTHO05D006855 4.5e-06 56.6 85 42.4


User provided reference genes

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