Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g41657 Chara braunii HOM05D003698 ORTHO05D004320 3.9e-142 508.1 248 100.0
CBR_g44345 Chara braunii HOM05D003698 ORTHO05D004320 9.7e-141 503.4 248 98.8
CBR_g4022 Chara braunii HOM05D003698 ORTHO05D004320 4.8e-116 421.4 241 81.3
SMO367G1007 Selaginella moellendorffii HOM05D003698 ORTHO05D004320 4.4e-109 398.3 242 78.1
ATR0680G146 Amborella trichopoda HOM05D003698 ORTHO05D004320 1.3e-108 396.7 240 77.1
COL.COLO4_12672 Corchorus olitorius HOM05D003698 ORTHO05D004320 5.3e-107 391.3 243 77.0
Actinidia09997 Actinidia chinensis HOM05D003698 ORTHO05D004320 7.0e-107 391.0 242 75.2
Mapoly0004s0121 Marchantia polymorpha HOM05D003698 ORTHO05D004320 7.0e-107 391.0 240 75.4
Cc02_g37580 Coffea canephora HOM05D003698 ORTHO05D004320 9.1e-107 390.6 246 76.0
Nitab4.5_0010110g0030 Nicotiana tabacum HOM05D003698 ORTHO05D004320 9.1e-107 390.6 241 76.3
Pp3c23_11670 Physcomitrium patens HOM05D003698 ORTHO05D004320 9.1e-107 390.6 243 74.9
Dinv43781 Davidia involucrata HOM05D003698 ORTHO05D004320 1.6e-106 389.8 242 76.0
Manes.01G259900 Manihot esculenta HOM05D003698 ORTHO05D004320 2.7e-106 389.0 245 76.3
Nn1g01429 Nelumbo nucifera HOM05D003698 ORTHO05D004320 2.7e-106 389.0 246 75.6
FAN01G1997 Fragaria x ananassa HOM05D003698 ORTHO05D004320 4.5e-106 388.3 243 75.7
FAN06G0259 Fragaria x ananassa HOM05D003698 ORTHO05D004320 4.5e-106 388.3 243 75.7
ECA236G4925 Erigeron canadensis HOM05D003698 ORTHO05D004320 5.9e-106 387.9 242 75.2
FvH4_7g13630 Fragaria vesca HOM05D003698 ORTHO05D004320 5.9e-106 387.9 243 75.7
Nitab4.5_0001702g0210 Nicotiana tabacum HOM05D003698 ORTHO05D004320 1.0e-105 387.1 241 75.5
Gohir.A12G104900 Gossypium hirsutum HOM05D003698 ORTHO05D004320 1.3e-105 386.7 243 75.3
Manes.05G037500 Manihot esculenta HOM05D003698 ORTHO05D004320 1.3e-105 386.7 245 75.5
Peaxi162Scf00397g00424 Petunia axillaris HOM05D003698 ORTHO05D004320 1.3e-105 386.7 240 77.5
AL4G44990 Arabidopsis lyrata HOM05D003698 ORTHO05D004320 1.7e-105 386.3 242 74.8
Sopen08g004500 Solanum pennellii HOM05D003698 ORTHO05D004320 1.7e-105 386.3 240 76.2
Lj1g0021860 Lotus japonicus HOM05D003698 ORTHO05D004320 2.2e-105 386.0 246 74.8
AT2G45790 Arabidopsis thaliana HOM05D003698 ORTHO05D004320 2.9e-105 385.6 242 74.8
CSS0014093 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 2.9e-105 385.6 242 75.2
CiPaw.01G057600 Carya illinoinensis HOM05D003698 ORTHO05D004320 2.9e-105 385.6 245 75.1
Gorai.008G117900 Gossypium raimondii HOM05D003698 ORTHO05D004320 2.9e-105 385.6 243 75.7
Thecc.01G363600 Theobroma cacao HOM05D003698 ORTHO05D004320 3.8e-105 385.2 241 75.9
CARHR141060 Cardamine hirsuta HOM05D003698 ORTHO05D004320 5.0e-105 384.8 242 74.8
Oeu014677.1 Olea europaea HOM05D003698 ORTHO05D004320 5.0e-105 384.8 242 74.8
Solyc08g008670.3 Solanum lycopersicum HOM05D003698 ORTHO05D004320 5.0e-105 384.8 240 75.8
Thhalv10001604m.g Eutrema salsugineum HOM05D003698 ORTHO05D004320 6.5e-105 384.4 242 74.4
Gohir.D12G108800 Gossypium hirsutum HOM05D003698 ORTHO05D004320 6.5e-105 384.4 242 76.0
Medtr7g076670 Medicago truncatula HOM05D003698 ORTHO05D004320 6.5e-105 384.4 241 75.1
SalBow5G4069 Salvia bowleyana HOM05D003698 ORTHO05D004320 6.5e-105 384.4 242 74.8
A05p05780 Brassica napus HOM05D003698 ORTHO05D004320 8.5e-105 384.0 242 74.8
C04p06720 Brassica napus HOM05D003698 ORTHO05D004320 8.5e-105 384.0 242 74.8
BolC4t22293H Brassica oleracea HOM05D003698 ORTHO05D004320 8.5e-105 384.0 242 74.8
BraA03t11743Z Brassica rapa HOM05D003698 ORTHO05D004320 8.5e-105 384.0 242 75.2
BraA05t19544Z Brassica rapa HOM05D003698 ORTHO05D004320 8.5e-105 384.0 242 74.8
MSTRG.4868 Avicennia marina HOM05D003698 ORTHO05D004320 1.1e-104 383.6 242 74.4
A03p25370 Brassica napus HOM05D003698 ORTHO05D004320 1.1e-104 383.6 242 74.8
CANSAT56G2897 Cannabis sativa HOM05D003698 ORTHO05D004320 1.1e-104 383.6 242 74.8
Solyc05g048760.3 Solanum lycopersicum HOM05D003698 ORTHO05D004320 1.1e-104 383.6 240 75.8
PGSC0003DMG400021636 Solanum tuberosum HOM05D003698 ORTHO05D004320 1.1e-104 383.6 240 75.4
Glyma.18G229800 Glycine max HOM05D003698 ORTHO05D004320 1.9e-104 382.9 243 74.5
BcaB01g03252 Brassica carinata HOM05D003698 ORTHO05D004320 2.5e-104 382.5 242 74.4
Dinv32446 Davidia involucrata HOM05D003698 ORTHO05D004320 2.5e-104 382.5 241 75.1
Nitab4.5_0010827g0020 Nicotiana tabacum HOM05D003698 ORTHO05D004320 2.5e-104 382.5 240 75.8
Os04g0682300 Oryza sativa ssp. japonica HOM05D003698 ORTHO05D004320 2.5e-104 382.5 241 74.7
Psat3g111000 Pisum sativum HOM05D003698 ORTHO05D004320 2.5e-104 382.5 243 74.5
BcaC01g05105 Brassica carinata HOM05D003698 ORTHO05D004320 3.2e-104 382.1 242 74.4
BolC3t15377H Brassica oleracea HOM05D003698 ORTHO05D004320 3.2e-104 382.1 242 74.4
BcaB02g09006 Brassica carinata HOM05D003698 ORTHO05D004320 4.2e-104 381.7 242 74.4
BcaC02g12181 Brassica carinata HOM05D003698 ORTHO05D004320 4.2e-104 381.7 241 74.7
Carub.0004s2849 Capsella rubella HOM05D003698 ORTHO05D004320 4.2e-104 381.7 242 74.0
Duzib133G0563 Durio zibethinus HOM05D003698 ORTHO05D004320 4.2e-104 381.7 243 74.5
VMungo1383G3090 Vigna mungo HOM05D003698 ORTHO05D004320 4.2e-104 381.7 243 74.1
GSVIVG01026838001 Vitis vinifera HOM05D003698 ORTHO05D004320 4.2e-104 381.7 243 73.7
Hma1.2p1_0033F.1_g020410 Hydrangea macrophylla HOM05D003698 ORTHO05D004320 5.5e-104 381.3 244 74.6
PSO478G0134 Papaver somniferum HOM05D003698 ORTHO05D004320 5.5e-104 381.3 242 74.8
PGR042G0708 Punica granatum HOM05D003698 ORTHO05D004320 5.5e-104 381.3 242 74.8
RcHm_v2.0_Chr1g0353671 Rosa chinensis HOM05D003698 ORTHO05D004320 5.5e-104 381.3 242 74.4
C03p30280 Brassica napus HOM05D003698 ORTHO05D004320 9.4e-104 380.6 242 74.0
Dinv43783 Davidia involucrata HOM05D003698 ORTHO05D004320 9.4e-104 380.6 242 74.4
PGR044G0179 Punica granatum HOM05D003698 ORTHO05D004320 9.4e-104 380.6 245 74.3
Glyma.09G262400 Glycine max HOM05D003698 ORTHO05D004320 1.2e-103 380.2 243 73.7
Potri.014G080500 Populus trichocarpa HOM05D003698 ORTHO05D004320 1.2e-103 380.2 242 74.4
Sp4g27860 Schrenkiella parvula HOM05D003698 ORTHO05D004320 1.2e-103 380.2 242 73.6
Sopen05g028080 Solanum pennellii HOM05D003698 ORTHO05D004320 1.2e-103 380.2 239 75.3
arahy.Tifrunner.gnm1.ann1.51RIH8 Arachis hypogaea HOM05D003698 ORTHO05D004320 1.6e-103 379.8 243 72.8
HanXRQChr06g0169891 Helianthus annuus HOM05D003698 ORTHO05D004320 1.6e-103 379.8 243 73.3
SGA_v2.0_scaffold11G05655 Striga asiatica HOM05D003698 ORTHO05D004320 1.6e-103 379.8 242 74.8
Aqoxy7G00375 Aquilegia oxysepala HOM05D003698 ORTHO05D004320 2.7e-103 379.0 243 73.7
PSO782G3808 Papaver somniferum HOM05D003698 ORTHO05D004320 2.7e-103 379.0 242 74.4
arahy.Tifrunner.gnm1.ann1.L2MSK1 Arachis hypogaea HOM05D003698 ORTHO05D004320 4.7e-103 378.3 243 72.8
CDE05G2621 Ceratophyllum demersum HOM05D003698 ORTHO05D004320 4.7e-103 378.3 242 73.6
Phvul.008G068100 Phaseolus vulgaris HOM05D003698 ORTHO05D004320 4.7e-103 378.3 243 73.7
Sc02g0002070 Simmondsia chinensis HOM05D003698 ORTHO05D004320 6.1e-103 377.9 244 73.4
Gorai.004G157100 Gossypium raimondii HOM05D003698 ORTHO05D004320 8.0e-103 377.5 243 73.3
TAR629G2702 Trochodendron aralioides HOM05D003698 ORTHO05D004320 8.0e-103 377.5 247 73.7
Zm00001eb065790 Zea mays HOM05D003698 ORTHO05D004320 8.0e-103 377.5 241 74.3
BraA04t18865Z Brassica rapa HOM05D003698 ORTHO05D004320 1.0e-102 377.1 241 73.9
Ca_07888_v3 Cicer arietinum L. HOM05D003698 ORTHO05D004320 1.0e-102 377.1 243 72.8
TWI14G1008 Tripterygium wilfordii HOM05D003698 ORTHO05D004320 1.0e-102 377.1 243 73.3
MD01G1053400 Malus domestica HOM05D003698 ORTHO05D004320 1.4e-102 376.7 242 74.0
Sabra14G0058400 Salix brachista HOM05D003698 ORTHO05D004320 1.4e-102 376.7 243 74.1
unitig_22.g6808 Utricularia gibba HOM05D003698 ORTHO05D004320 1.8e-102 376.3 241 73.9
Gohir.D08G151400 Gossypium hirsutum HOM05D003698 ORTHO05D004320 2.3e-102 375.9 243 72.8
C04p71840 Brassica napus HOM05D003698 ORTHO05D004320 4.0e-102 375.2 241 73.4
BolC4t28682H Brassica oleracea HOM05D003698 ORTHO05D004320 4.0e-102 375.2 242 73.1
Rhsim07G0018200 Rhododendron simsii HOM05D003698 ORTHO05D004320 5.2e-102 374.8 242 72.3
A04p34040 Brassica napus HOM05D003698 ORTHO05D004320 6.8e-102 374.4 241 73.4
Gohir.A08G129900 Gossypium hirsutum HOM05D003698 ORTHO05D004320 6.8e-102 374.4 243 72.8
Cfa003959 Carpinus fangiana HOM05D003698 ORTHO05D004320 8.8e-102 374.0 243 73.3
TWI59G0409 Tripterygium wilfordii HOM05D003698 ORTHO05D004320 8.8e-102 374.0 241 73.0
Lalb_Chr04g0256721 Lupinus albus HOM05D003698 ORTHO05D004320 2.0e-101 372.9 244 72.5
Potri.014G080300 Populus trichocarpa HOM05D003698 ORTHO05D004320 2.6e-101 372.5 242 73.1
CDE08G1212 Ceratophyllum demersum HOM05D003698 ORTHO05D004320 3.4e-101 372.1 242 72.3
PGSC0003DMG400013702 Solanum tuberosum HOM05D003698 ORTHO05D004320 3.4e-101 372.1 241 73.4
ClCG11G000500 Citrullus lanatus HOM05D003698 ORTHO05D004320 4.4e-101 371.7 240 73.3
FAN10G2510 Fragaria x ananassa HOM05D004612 ORTHO05D004940 4.4e-101 371.7 227 77.1
Prupe.2G162400 Prunus persica HOM05D003698 ORTHO05D004320 4.4e-101 371.7 242 73.1
THA.LOC104827595 Tarenaya hassleriana HOM05D003698 ORTHO05D004320 4.4e-101 371.7 242 70.2
TWI59G0439 Tripterygium wilfordii HOM05D003698 ORTHO05D004320 4.4e-101 371.7 242 72.3
Aa31LG1G27240 Aethionema arabicum HOM05D003698 ORTHO05D004320 7.5e-101 370.9 242 71.1
MELO3C026482.2 Cucumis melo HOM05D003698 ORTHO05D004320 9.8e-101 370.5 240 72.1
Hund16943 Selenicereus undatus HOM05D003698 ORTHO05D004320 9.8e-101 370.5 240 72.1
AUR62036720 Chenopodium quinoa HOM05D003698 ORTHO05D004320 1.7e-100 369.8 244 70.9
QL08p049567 Quercus lobata HOM05D003698 ORTHO05D004320 1.7e-100 369.8 242 70.7
MD07G1141700 Malus domestica HOM05D003698 ORTHO05D004320 2.2e-100 369.4 242 73.6
Cre14.g626900 Chlamydomonas reinhardtii HOM05D003698 ORTHO05D004320 2.8e-100 369.0 245 73.1
BcaC02g07054 Brassica carinata HOM05D003698 ORTHO05D004320 3.7e-100 368.6 242 72.3
Sed0025976 Sechium edule HOM05D003698 ORTHO05D004320 8.3e-100 367.5 240 72.5
THA.LOC104817282 Tarenaya hassleriana HOM05D003698 ORTHO05D004320 8.3e-100 367.5 242 71.1
MBI18_g09776_MAGBIO Magnolia biondii HOM05D003698 ORTHO05D004320 2.4e-99 365.9 286 65.0
Solyc05g046340.2 Solanum lycopersicum HOM05D003698 ORTHO05D004320 3.1e-99 365.5 239 72.4
vmacro20957 Vaccinium macrocarpon HOM05D003698 ORTHO05D004320 4.1e-99 365.2 281 64.4
Eucgr.E00182 Eucalyptus grandis HOM05D003698 ORTHO05D004320 1.2e-98 363.6 243 72.4
CSS0025539 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 1.7e-97 359.8 219 77.6
Peaxi162Scf00246g01118 Petunia axillaris HOM05D003698 ORTHO05D004320 1.7e-97 359.8 240 72.9
Atru.chr5.444 Acer truncatum HOM05D003698 ORTHO05D004320 2.3e-97 359.4 225 74.7
CsaV3_5G014110 Cucumis sativus L. HOM05D003698 ORTHO05D004320 8.6e-97 357.5 231 72.3
Ah.13g077050 Amaranthus hybridus HOM05D003698 ORTHO05D004320 5.5e-96 354.8 269 62.8
SGA_v2.0_scaffold43G16443 Striga asiatica HOM05D003698 ORTHO05D004320 1.2e-95 353.6 225 74.7
HanXRQChr04g0121661 Helianthus annuus HOM05D003698 ORTHO05D004320 1.6e-95 353.2 218 74.8
Ciclev10024269m.g Citrus clementina HOM05D003698 ORTHO05D004320 2.8e-95 352.4 274 64.2
arahy.Tifrunner.gnm1.ann1.0R79PA Arachis hypogaea HOM05D003698 ORTHO05D004320 6.1e-95 351.3 236 69.5
SHI30460 Sapria himalayana HOM05D003698 ORTHO05D004320 8.0e-95 350.9 229 72.5
PRCOL_00001907 Prasinoderma coloniale HOM05D003698 ORTHO05D004320 1.4e-94 350.1 246 67.1
CiPaw.02G028200 Carya illinoinensis HOM05D003698 ORTHO05D004320 1.8e-94 349.7 243 70.0
CSS0039842 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 5.2e-94 348.2 246 70.3
Lsat_1_v5_gn_7_5261 Lactuca sativa HOM05D003698 ORTHO05D004320 5.2e-94 348.2 243 67.9
Oeu014681.1 Olea europaea HOM05D003698 ORTHO05D004320 1.5e-93 346.7 223 72.6
Lj7A516T66 Lonicera japonica HOM05D003698 ORTHO05D004320 5.7e-93 344.7 224 72.8
AagrBONN_evm.TU.Sc2ySwM_117.907 Anthoceros agrestis HOM05D003698 ORTHO05D004320 7.5e-93 344.4 208 77.4
DCAR_008599 Daucus carota HOM05D003698 ORTHO05D004320 4.1e-91 338.6 203 77.8
Sopen05g027620 Solanum pennellii HOM05D003698 ORTHO05D004320 5.4e-91 338.2 241 67.6
SalBow5G5099 Salvia bowleyana HOM05D003698 ORTHO05D004320 7.0e-91 337.8 208 76.9
MCO01G022 Micromonas commoda HOM05D003698 ORTHO05D004320 1.2e-90 337.0 231 65.8
PGSC0003DMG400005806 Solanum tuberosum HOM05D003698 ORTHO05D004320 1.9e-88 329.7 224 71.4
EL10Ac1g02076 Beta vulgaris HOM05D003698 ORTHO05D004320 2.5e-88 329.3 352 49.7
TWI59G0950 Tripterygium wilfordii HOM05D003698 ORTHO05D004320 4.7e-87 325.1 208 74.5
Migut.N01427 Erythranthe guttata HOM05D003698 ORTHO05D004320 1.9e-83 313.2 189 77.2
EL10Ac7g16340 Beta vulgaris HOM05D003698 ORTHO05D004320 4.6e-82 308.5 226 65.5
CAN.G134.78 Capsicum annuum HOM05D003698 ORTHO05D004320 5.6e-80 301.6 185 75.7
Eucgr.E00184 Eucalyptus grandis HOM05D003698 ORTHO05D004320 1.4e-78 297.0 184 75.0
RhsimUnG0002300 Rhododendron simsii HOM05D003698 ORTHO05D004320 5.2e-78 295.0 296 54.7
Cfa027079 Carpinus fangiana HOM05D003698 ORTHO05D004320 7.5e-77 291.2 248 55.6
MSTRG.28213 Avicennia marina HOM05D003698 ORTHO05D004320 2.7e-74 282.7 178 76.4
Haze_24893 Corylus avellana HOM05D003698 ORTHO05D004320 1.4e-67 260.4 208 64.9
SEGI_40114 Sequoiadendron giganteum HOM05D003698 ORTHO05D004320 1.9e-67 260.0 161 72.7
Nn6g33536 Nelumbo nucifera HOM05D003698 ORTHO05D004320 1.7e-65 253.4 237 55.7
Cpa.g.sc170.35 Carica papaya HOM05D003698 ORTHO05D004320 3.9e-65 252.3 152 76.3
Haze_15453 Corylus avellana HOM05D003698 ORTHO05D004320 8.6e-65 251.1 150 78.7
Lj9A580G54 Lonicera japonica HOM05D003698 ORTHO05D004320 2.5e-64 249.6 151 74.2
FAN06G0644 Fragaria x ananassa HOM05D003698 ORTHO05D004320 9.9e-61 237.7 146 76.7
AUR62013874 Chenopodium quinoa HOM05D003698 ORTHO05D004320 6.0e-58 228.4 145 72.4
CSS0016921 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 1.5e-56 223.8 136 75.0
HPP92_000764 Vanilla planifolia HOM05D003698 ORTHO05D004320 2.8e-55 219.5 215 54.9
Haze_05811 Corylus avellana HOM05D003698 ORTHO05D004320 2.6e-53 213.0 154 66.2
CSS0047600 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 3.9e-49 199.1 155 63.2
FAN03G0966 Fragaria x ananassa HOM05D003698 ORTHO05D004320 1.5e-48 197.2 122 75.4
Cpa.g.c40434 Carica papaya HOM05D003698 ORTHO05D004320 3.1e-38 162.9 111 71.2
Cpa.g.c46781 Carica papaya HOM05D003698 ORTHO05D004320 3.1e-38 162.9 96 79.2
RcHm_v2.0_Chr1g0364561 Rosa chinensis HOM05D003698 ORTHO05D004320 2.1e-34 150.2 87 79.3
Prupe.8G033900 Prunus persica HOM05D003698 ORTHO05D004320 1.5e-32 144.1 90 73.3
TPR.G40455 Trifolium pratense HOM05D003698 ORTHO05D004320 5.5e-27 125.6 81 75.3
MBI17_g19515_MAGBIO Magnolia biondii HOM05D003698 ORTHO05D004320 1.0e-25 121.3 90 67.8
CANSAT25G0181 Cannabis sativa HOM05D003698 ORTHO05D004320 6.7e-25 118.6 70 75.7
Solyc08g076550.3 Solanum lycopersicum HOM05D005023 ORTHO05D006009 1.9e-24 117.1 72 75.0
RcHm_v2.0_Chr4g0404481 Rosa chinensis HOM05D003698 ORTHO05D004320 1.3e-20 104.4 72 70.8
RcHm_v2.0_Chr5g0045001 Rosa chinensis HOM05D003698 ORTHO05D004320 2.3e-17 93.6 85 60.0
TPR.G18261 Trifolium pratense HOM05D003698 ORTHO05D004320 2.3e-17 93.6 81 61.7
CAN.G134.80 Capsicum annuum HOM05D003698 ORTHO05D004320 1.4e-14 84.3 57 71.9
CANSAT11G2537 Cannabis sativa HOM05D003698 ORTHO05D004320 3.4e-13 79.7 45 73.3
Haze_05812 Corylus avellana HOM05D003698 ORTHO05D004320 4.2e-11 72.8 64 59.4
TAR636G2570 Trochodendron aralioides HOM05D003698 ORTHO05D004320 3.6e-10 69.7 72 54.2
CSS0029944 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 1.0e-09 68.2 80 50.0
Hund27303 Selenicereus undatus HOM05D000402 ORTHO05D000263 5.7e-08 62.4 34 76.5
ClCG03G012620 Citrullus lanatus HOM05D003698 ORTHO05D004320 2.8e-07 60.1 38 68.4
MBI17_g19513_MAGBIO Magnolia biondii HOM05D003698 ORTHO05D004320 2.8e-07 60.1 61 50.8
TPR.G42 Trifolium pratense HOM05D003698 ORTHO05D004320 2.8e-07 60.1 31 80.6
Solyc08g076560.1 Solanum lycopersicum HOM05D003698 ORTHO05D391923 4.1e-06 56.2 37 67.6


User provided reference genes

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