Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g41538 Chara braunii HOM05D002451 ORTHO05D007901 5.6e-92 340.9 167 100.0
Cc06_g10440 Coffea canephora HOM05D002451 ORTHO05D007901 6.7e-21 104.8 112 51.8
Sc08g0008000 Simmondsia chinensis HOM05D002451 ORTHO05D007901 2.6e-20 102.8 104 52.9
Pp3c1_19270 Physcomitrium patens HOM05D002451 ORTHO05D007901 3.3e-20 102.4 109 50.5
Gohir.A05G025800 Gossypium hirsutum HOM05D002451 ORTHO05D007901 5.7e-20 101.7 112 50.0
Thhalv10016464m.g Eutrema salsugineum HOM05D002451 ORTHO05D007901 7.4e-20 101.3 132 42.4
Sp4g22900 Schrenkiella parvula HOM05D002451 ORTHO05D007901 7.4e-20 101.3 120 45.8
GSVIVG01015305001 Vitis vinifera HOM05D002451 ORTHO05D007901 7.4e-20 101.3 121 47.1
AT2G40570 Arabidopsis thaliana HOM05D002451 ORTHO05D007901 9.7e-20 100.9 122 44.3
SHI02693 Sapria himalayana HOM05D002451 ORTHO05D007901 1.3e-19 100.5 106 49.1
Cfa003184 Carpinus fangiana HOM05D002451 ORTHO05D007901 2.2e-19 99.8 110 47.3
ATR0705G045 Amborella trichopoda HOM05D002451 ORTHO05D007901 2.8e-19 99.4 110 50.0
ECA240G2417 Erigeron canadensis HOM05D002451 ORTHO05D007901 3.7e-19 99.0 111 46.8
BcaB06g29152 Brassica carinata HOM05D002451 ORTHO05D007901 4.8e-19 98.6 121 43.0
THA.LOC104807537 Tarenaya hassleriana HOM05D002451 ORTHO05D007901 4.8e-19 98.6 114 46.5
Aa31LG3G1530 Aethionema arabicum HOM05D002451 ORTHO05D007901 6.3e-19 98.2 129 41.1
Duzib168G1562 Durio zibethinus HOM05D002451 ORTHO05D007901 6.3e-19 98.2 111 46.8
Gorai.009G027400 Gossypium raimondii HOM05D002451 ORTHO05D007901 6.3e-19 98.2 111 48.6
Mapoly0002s0306 Marchantia polymorpha HOM05D002451 ORTHO05D007901 8.2e-19 97.8 110 41.8
Phvul.002G309000 Phaseolus vulgaris HOM05D002451 ORTHO05D007901 8.2e-19 97.8 125 45.6
CiPaw.03G225500 Carya illinoinensis HOM05D002451 ORTHO05D007901 1.1e-18 97.4 115 47.8
BolC4t28342H Brassica oleracea HOM05D002451 ORTHO05D007901 1.4e-18 97.1 121 41.3
CDE08G0666 Ceratophyllum demersum HOM05D002257 ORTHO05D007901 1.4e-18 97.1 140 40.0
Manes.16G108300 Manihot esculenta HOM05D002451 ORTHO05D007901 1.4e-18 97.1 128 44.5
Sopen12g003400 Solanum pennellii HOM05D002451 ORTHO05D007901 1.8e-18 96.7 111 45.0
A04p31020 Brassica napus HOM05D002451 ORTHO05D007901 2.4e-18 96.3 111 42.3
BraA04t18559Z Brassica rapa HOM05D002451 ORTHO05D007901 2.4e-18 96.3 111 42.3
Nn1g07675 Nelumbo nucifera HOM05D002451 ORTHO05D007901 2.4e-18 96.3 110 46.4
Nn8g39075 Nelumbo nucifera HOM05D002451 ORTHO05D007901 2.4e-18 96.3 110 46.4
CAN.G1642.1 Capsicum annuum HOM05D002451 ORTHO05D007901 3.1e-18 95.9 111 45.9
Glyma.05G227000 Glycine max HOM05D002451 ORTHO05D007901 3.1e-18 95.9 109 45.0
Solyc12g008450.2 Solanum lycopersicum HOM05D002451 ORTHO05D007901 3.1e-18 95.9 111 45.0
Atru.chr7.1460 Acer truncatum HOM05D002451 ORTHO05D007901 4.1e-18 95.5 109 45.0
EL10Ac8g18383 Beta vulgaris HOM05D002451 ORTHO05D007901 4.1e-18 95.5 110 46.4
ClCG11G002150 Citrullus lanatus HOM05D002451 ORTHO05D007901 4.1e-18 95.5 107 48.6
Lsat_1_v5_gn_7_39761 Lactuca sativa HOM05D002451 ORTHO05D007901 4.1e-18 95.5 104 48.1
Potri.018G087300 Populus trichocarpa HOM05D002451 ORTHO05D007901 4.1e-18 95.5 110 46.4
Thecc.09G101000 Theobroma cacao HOM05D002451 ORTHO05D007901 4.1e-18 95.5 111 45.9
BcaC02g07322 Brassica carinata HOM05D002451 ORTHO05D007901 5.3e-18 95.1 107 43.9
CAN.G4309.1 Capsicum annuum HOM05D002451 ORTHO05D007901 5.3e-18 95.1 111 45.9
CARHR135670 Cardamine hirsuta HOM05D002451 ORTHO05D007901 5.3e-18 95.1 120 45.0
AL4G38420 Arabidopsis lyrata HOM05D002451 ORTHO05D007901 7.0e-18 94.7 122 43.4
C04p68410 Brassica napus HOM05D002451 ORTHO05D007901 7.0e-18 94.7 107 43.9
Medtr8g102540 Medicago truncatula HOM05D002451 ORTHO05D007901 7.0e-18 94.7 109 44.0
PGSC0003DMG400000298 Solanum tuberosum HOM05D002451 ORTHO05D007901 7.0e-18 94.7 111 45.0
FvH4_1g06070 Fragaria vesca HOM05D002451 ORTHO05D007901 1.2e-17 94.0 110 47.3
FAN23G2627 Fragaria x ananassa HOM05D002451 ORTHO05D007901 1.2e-17 94.0 110 47.3
FAN26G0432 Fragaria x ananassa HOM05D002451 ORTHO05D007901 1.2e-17 94.0 110 47.3
FAN26G3439 Fragaria x ananassa HOM05D002451 ORTHO05D007901 1.2e-17 94.0 110 47.3
MD02G1065300 Malus domestica HOM05D002451 ORTHO05D007901 1.6e-17 93.6 110 46.4
Oeu053181.2 Olea europaea HOM05D002451 ORTHO05D007901 1.6e-17 93.6 111 45.0
TAR636G2911 Trochodendron aralioides HOM05D002451 ORTHO05D005601 1.6e-17 93.6 110 47.3
FAN28G1338 Fragaria x ananassa HOM05D002451 ORTHO05D007901 2.0e-17 93.2 110 46.4
Carub.0004s2284 Capsella rubella HOM05D002451 ORTHO05D007901 2.6e-17 92.8 122 42.6
HPP92_009804 Vanilla planifolia HOM05D002451 ORTHO05D007901 2.6e-17 92.8 118 43.2
Nitab4.5_0005668g0020 Nicotiana tabacum HOM05D002451 ORTHO05D007901 3.5e-17 92.4 106 48.1
Prupe.7G220200 Prunus persica HOM05D002451 ORTHO05D007901 3.5e-17 92.4 110 47.3
Sabra18G0075400 Salix brachista HOM05D002451 ORTHO05D007901 3.5e-17 92.4 110 44.5
SMO118G0195 Selaginella moellendorffii HOM05D002451 ORTHO05D007901 3.5e-17 92.4 111 43.2
CSS0003026 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D007901 4.5e-17 92.0 110 43.6
Eucgr.C00999 Eucalyptus grandis HOM05D002451 ORTHO05D007901 5.9e-17 91.7 110 41.8
Hma1.2p1_0571F.1_g180680 Hydrangea macrophylla HOM05D002451 ORTHO05D007901 5.9e-17 91.7 112 43.8
Hma1.2p1_0571F.1_g180690 Hydrangea macrophylla HOM05D002451 ORTHO05D007901 5.9e-17 91.7 112 43.8
SalBow1G3696 Salvia bowleyana HOM05D002451 ORTHO05D007901 5.9e-17 91.7 110 46.4
SalBow1G8658 Salvia bowleyana HOM05D002451 ORTHO05D007901 5.9e-17 91.7 110 46.4
CsaV3_2G001930 Cucumis sativus L. HOM05D002451 ORTHO05D007901 7.7e-17 91.3 106 44.3
RcHm_v2.0_Chr2g0091831 Rosa chinensis HOM05D002451 ORTHO05D007901 7.7e-17 91.3 111 44.1
vmacro06250 Vaccinium macrocarpon HOM05D002451 ORTHO05D007901 7.7e-17 91.3 123 39.0
AagrBONN_evm.TU.Sc2ySwM_117.4166 Anthoceros agrestis HOM05D002451 ORTHO05D007901 1.3e-16 90.5 111 43.2
Aqoxy7G01412 Aquilegia oxysepala HOM05D002451 ORTHO05D007901 1.7e-16 90.1 111 42.3
MSTRG.10604 Avicennia marina HOM05D002451 ORTHO05D007901 1.7e-16 90.1 115 41.7
Lj4g0024953 Lotus japonicus HOM05D002451 ORTHO05D007901 2.2e-16 89.7 109 43.1
Psat7g017040 Pisum sativum HOM05D002451 ORTHO05D007901 2.2e-16 89.7 109 45.0
unitig_46.g18399 Utricularia gibba HOM05D002451 ORTHO05D007901 2.2e-16 89.7 122 41.8
Lalb_Chr05g0223211 Lupinus albus HOM05D002451 ORTHO05D007901 2.9e-16 89.4 109 43.1
arahy.Tifrunner.gnm1.ann1.GUCG30 Arachis hypogaea HOM05D002451 ORTHO05D007901 6.5e-16 88.2 108 44.4
Lj7A665T28 Lonicera japonica HOM05D002451 ORTHO05D007901 6.5e-16 88.2 110 40.9
AUR62021412 Chenopodium quinoa HOM05D002451 ORTHO05D007901 8.5e-16 87.8 104 46.2
Ca_17363_v3 Cicer arietinum L. HOM05D002451 ORTHO05D007901 1.1e-15 87.4 109 43.1
Rhsim03G0237000 Rhododendron simsii HOM05D002451 ORTHO05D007901 1.5e-15 87.0 110 41.8
CANSAT56G2212 Cannabis sativa HOM05D002451 ORTHO05D007901 1.9e-15 86.7 110 43.6
MBI04_g20306_MAGBIO Magnolia biondii HOM05D002451 ORTHO05D007901 4.2e-15 85.5 110 40.9
MD15G1196200 Malus domestica HOM05D002451 ORTHO05D007901 7.2e-15 84.7 109 44.0
SGA_v2.0_scaffold843G53664 Striga asiatica HOM05D002451 ORTHO05D007901 9.4e-15 84.3 110 41.8
SEGI_00986 Sequoiadendron giganteum HOM05D002451 ORTHO05D007901 1.2e-14 84.0 104 40.4
Actinidia32654 Actinidia chinensis HOM05D002451 ORTHO05D007901 1.6e-14 83.6 110 40.0
Os06g0555500 Oryza sativa ssp. japonica HOM05D002451 ORTHO05D007901 1.6e-14 83.6 114 41.2
PGR142G3373 Punica granatum HOM05D002451 ORTHO05D007901 3.7e-11 72.4 59 57.6
Dinv36690 Davidia involucrata HOM05D002451 ORTHO05D007901 4.1e-10 68.9 85 44.7
TWI34G1500 Tripterygium wilfordii HOM05D002451 ORTHO05D007901 7.0e-10 68.2 59 52.5
Hund09106 Selenicereus undatus HOM05D002451 ORTHO05D007901 5.9e-09 65.1 97 40.2
DCAR_012039 Daucus carota HOM05D002451 ORTHO05D007901 1.7e-08 63.5 59 50.8
Zm00001eb384640 Zea mays HOM05D002451 ORTHO05D007901 1.7e-08 63.5 62 48.4
AUR62010914 Chenopodium quinoa HOM05D002451 ORTHO05D007901 5.0e-08 62.0 105 36.2
TPR.G23434 Trifolium pratense HOM05D002451 ORTHO05D007901 8.5e-08 61.2 60 46.7
COL.COLO4_34751 Corchorus olitorius HOM05D002451 ORTHO05D007901 1.9e-07 60.1 70 42.9
Ciclev10010851m.g Citrus clementina HOM05D002451 ORTHO05D007901 2.5e-07 59.7 72 43.1
Peaxi162Scf00665g00035 Petunia axillaris HOM05D002451 ORTHO05D007901 4.2e-07 58.9 71 43.7
MELO3C004587.2 Cucumis melo HOM05D002451 ORTHO05D007901 5.5e-07 58.5 104 35.6
Ah.14g083250 Amaranthus hybridus HOM05D002451 ORTHO05D007901 7.2e-07 58.2 109 33.9
Cre06.g272100 Chlamydomonas reinhardtii HOM05D002451 ORTHO05D007901 1.2e-06 57.4 142 30.3
PSO063G0860 Papaver somniferum HOM05D002451 ORTHO05D007901 4.7e-06 55.5 57 47.4


User provided reference genes

Program Settings