Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g41468 Chara braunii HOM05D005146 ORTHO05D006752 4.3e-164 581.3 291 100.0
AagrBONN_evm.TU.Sc2ySwM_117.1420 Anthoceros agrestis HOM05D005146 ORTHO05D006752 2.2e-107 392.9 273 70.3
AagrBONN_evm.TU.Sc2ySwM_368.2751 Anthoceros agrestis HOM05D005146 ORTHO05D006752 1.1e-106 390.6 273 70.3
Mapoly0107s0028 Marchantia polymorpha HOM05D005146 ORTHO05D006752 3.1e-106 389.0 271 70.1
SGA_v2.0_scaffold12G05971 Striga asiatica HOM05D005146 ORTHO05D006752 2.0e-105 386.3 279 65.6
Os03g0355800 Oryza sativa ssp. japonica HOM05D005146 ORTHO05D006752 3.8e-104 382.1 267 68.2
PGSC0003DMG400003775 Solanum tuberosum HOM05D005146 ORTHO05D006752 6.5e-104 381.3 270 67.8
Migut.N03153 Erythranthe guttata HOM05D005146 ORTHO05D006752 1.1e-103 380.6 272 66.2
CAN.G311.14 Capsicum annuum HOM05D005146 ORTHO05D006752 1.9e-103 379.8 270 68.1
PGR083G0855 Punica granatum HOM05D005146 ORTHO05D006752 7.2e-103 377.9 272 67.3
Thecc.09G245400 Theobroma cacao HOM05D005146 ORTHO05D006752 7.2e-103 377.9 275 65.1
Zm00001eb017150 Zea mays HOM05D005146 ORTHO05D006752 1.2e-102 377.1 272 66.2
DCAR_009928 Daucus carota HOM05D005146 ORTHO05D006752 1.6e-102 376.7 272 66.5
Nitab4.5_0001540g0020 Nicotiana tabacum HOM05D005146 ORTHO05D006752 2.1e-102 376.3 270 67.4
Pp3c25_4490 Physcomitrium patens HOM05D005146 ORTHO05D006752 2.7e-102 375.9 271 66.8
Solyc04g081310.3 Solanum lycopersicum HOM05D005146 ORTHO05D006752 2.7e-102 375.9 270 67.4
Sopen04g034930 Solanum pennellii HOM05D005146 ORTHO05D006752 2.7e-102 375.9 270 67.4
Ciclev10002090m.g Citrus clementina HOM05D005146 ORTHO05D006752 3.6e-102 375.6 275 66.9
CANSAT11G0704 Cannabis sativa HOM05D005146 ORTHO05D006752 7.9e-102 374.4 275 65.1
unitig_746.g26814 Utricularia gibba HOM05D005146 ORTHO05D006752 1.0e-101 374.0 270 67.8
Oeu020876.1 Olea europaea HOM05D005146 ORTHO05D006752 1.4e-101 373.6 260 69.2
Cre05.g233300 Chlamydomonas reinhardtii HOM05D005146 ORTHO05D006752 1.8e-101 373.2 266 66.5
Nn6g32362 Nelumbo nucifera HOM05D005146 ORTHO05D006752 1.8e-101 373.2 282 64.2
Hund05199 Selenicereus undatus HOM05D005146 ORTHO05D006752 1.8e-101 373.2 272 66.2
GSVIVG01009887001 Vitis vinifera HOM05D005146 ORTHO05D006752 2.3e-101 372.9 276 65.9
QL02p011373 Quercus lobata HOM05D005146 ORTHO05D006752 3.0e-101 372.5 276 65.9
Sabra02G0019300 Salix brachista HOM05D005146 ORTHO05D006752 3.0e-101 372.5 276 65.6
Dinv31832 Davidia involucrata HOM05D005146 ORTHO05D006752 5.1e-101 371.7 280 64.3
Lj1g0002754 Lotus japonicus HOM05D005146 ORTHO05D006752 6.7e-101 371.3 268 66.0
Potri.002G023700 Populus trichocarpa HOM05D005146 ORTHO05D006752 6.7e-101 371.3 276 65.6
TWI56G0936 Tripterygium wilfordii HOM05D005146 ORTHO05D006752 8.8e-101 370.9 272 65.1
PSO700G0287 Papaver somniferum HOM05D005146 ORTHO05D006752 1.5e-100 370.2 270 65.9
Manes.05G148600 Manihot esculenta HOM05D005146 ORTHO05D006752 2.6e-100 369.4 272 65.8
PSO170G4907 Papaver somniferum HOM05D005146 ORTHO05D006752 2.6e-100 369.4 267 66.7
Aa31LG2G18510 Aethionema arabicum HOM05D005146 ORTHO05D006752 4.4e-100 368.6 272 66.9
CiPaw.07G151400 Carya illinoinensis HOM05D005146 ORTHO05D006752 4.4e-100 368.6 272 65.1
Eucgr.F01641 Eucalyptus grandis HOM05D005146 ORTHO05D006752 5.7e-100 368.2 272 64.3
Gohir.A08G010500 Gossypium hirsutum HOM05D005146 ORTHO05D006752 5.7e-100 368.2 275 64.0
Manes.11G065850 Manihot esculenta HOM05D005146 ORTHO05D006752 5.7e-100 368.2 272 65.4
CsaV3_2G029420 Cucumis sativus L. HOM05D005146 ORTHO05D006752 9.7e-100 367.5 271 65.7
Glyma.20G014100 Glycine max HOM05D005146 ORTHO05D006752 9.7e-100 367.5 271 65.7
Gohir.D08G020900 Gossypium hirsutum HOM05D005146 ORTHO05D006752 9.7e-100 367.5 275 64.0
Phvul.001G002400 Phaseolus vulgaris HOM05D005146 ORTHO05D006752 9.7e-100 367.5 271 66.1
Haze_04102 Corylus avellana HOM05D005146 ORTHO05D006752 1.3e-99 367.1 276 65.2
BcaC09g51970 Brassica carinata HOM05D005146 ORTHO05D006752 1.7e-99 366.7 272 66.2
BolC1t00708H Brassica oleracea HOM05D005146 ORTHO05D006752 1.7e-99 366.7 272 66.2
VMungo0251G0853 Vigna mungo HOM05D005146 ORTHO05D006752 1.7e-99 366.7 271 65.7
Lj5g0000481 Lotus japonicus HOM05D005146 ORTHO05D006752 2.2e-99 366.3 268 65.3
Psat5g013440 Pisum sativum HOM05D005146 ORTHO05D006752 2.2e-99 366.3 271 63.8
C01p07160 Brassica napus HOM05D005146 ORTHO05D006752 2.8e-99 365.9 272 66.2
Medtr3g113750 Medicago truncatula HOM05D005146 ORTHO05D006752 2.8e-99 365.9 274 63.5
Glyma.07G217500 Glycine max HOM05D005146 ORTHO05D006752 3.7e-99 365.5 271 66.1
CARHR239690 Cardamine hirsuta HOM05D005146 ORTHO05D006752 4.8e-99 365.2 272 65.8
THA.LOC104825772 Tarenaya hassleriana HOM05D005146 ORTHO05D006752 4.8e-99 365.2 272 65.1
BraA01t00610Z Brassica rapa HOM05D005146 ORTHO05D006752 6.3e-99 364.8 272 65.8
Prupe.1G367100 Prunus persica HOM05D005146 ORTHO05D006752 6.3e-99 364.8 272 63.2
Rhsim06G0022400 Rhododendron simsii HOM05D005146 ORTHO05D006752 6.3e-99 364.8 267 65.9
Thhalv10025950m.g Eutrema salsugineum HOM05D005146 ORTHO05D006752 8.2e-99 364.4 272 65.8
Lalb_Chr23g0266181 Lupinus albus HOM05D005146 ORTHO05D006752 8.2e-99 364.4 271 63.5
A01p06490 Brassica napus HOM05D005146 ORTHO05D006752 1.4e-98 363.6 272 65.8
Sp7g29580 Schrenkiella parvula HOM05D005146 ORTHO05D006752 1.4e-98 363.6 272 65.4
Atru.chr13.312 Acer truncatum HOM05D005146 ORTHO05D006752 1.8e-98 363.2 275 64.7
Carub.0007s0877 Capsella rubella HOM05D005146 ORTHO05D006752 1.8e-98 363.2 272 65.4
TPR.G34539 Trifolium pratense HOM05D005146 ORTHO05D006752 1.8e-98 363.2 271 63.1
arahy.Tifrunner.gnm1.ann1.RM6BI2 Arachis hypogaea HOM05D005146 ORTHO05D006752 2.4e-98 362.8 271 64.6
Cpa.g.sc1059.3 Carica papaya HOM05D005146 ORTHO05D006752 2.4e-98 362.8 272 65.4
arahy.Tifrunner.gnm1.ann1.DQ6KFY Arachis hypogaea HOM05D005146 ORTHO05D006752 3.1e-98 362.5 271 63.8
Ah.08g209140 Amaranthus hybridus HOM05D005146 ORTHO05D006752 4.1e-98 362.1 304 59.9
Cfa006669 Carpinus fangiana HOM05D005146 ORTHO05D006752 4.1e-98 362.1 276 64.5
ECA238G2776 Erigeron canadensis HOM05D005146 ORTHO05D006752 4.1e-98 362.1 271 64.9
HanXRQChr06g0183611 Helianthus annuus HOM05D005146 ORTHO05D006752 4.1e-98 362.1 271 65.3
Lsat_1_v5_gn_2_8601 Lactuca sativa HOM05D005146 ORTHO05D006752 4.1e-98 362.1 271 65.7
MD15G1013600 Malus domestica HOM05D005146 ORTHO05D006752 4.1e-98 362.1 275 62.9
RcHm_v2.0_Chr6g0302671 Rosa chinensis HOM05D005146 ORTHO05D006752 4.1e-98 362.1 271 63.5
AL7G20220 Arabidopsis lyrata HOM05D005146 ORTHO05D006752 5.3e-98 361.7 272 65.4
AT4G31790 Arabidopsis thaliana HOM05D005146 ORTHO05D006752 5.3e-98 361.7 272 65.1
Sed0001191 Sechium edule HOM05D005146 ORTHO05D006752 7.0e-98 361.3 271 63.8
arahy.Tifrunner.gnm1.ann1.VN499F Arachis hypogaea HOM05D005146 ORTHO05D006752 9.1e-98 360.9 271 63.8
BcaNung05185 Brassica carinata HOM05D005146 ORTHO05D006752 9.1e-98 360.9 272 64.7
FvH4_2g38650 Fragaria vesca HOM05D005146 ORTHO05D006752 1.2e-97 360.5 271 63.1
FAN27G1976 Fragaria x ananassa HOM05D005146 ORTHO05D006752 1.2e-97 360.5 271 63.1
Actinidia15413 Actinidia chinensis HOM05D005146 ORTHO05D006752 1.5e-97 360.1 275 63.3
SMO146G0393 Selaginella moellendorffii HOM05D005146 ORTHO05D006752 2.0e-97 359.8 271 64.9
FAN15G2679 Fragaria x ananassa HOM05D005146 ORTHO05D006752 4.5e-97 358.6 271 62.7
CSS0007392 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 5.9e-97 358.2 267 65.2
CSS0032974 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 5.9e-97 358.2 267 65.2
Cc10_g01800 Coffea canephora HOM05D005146 ORTHO05D006752 7.7e-97 357.8 272 63.6
AUR62019460 Chenopodium quinoa HOM05D005146 ORTHO05D006752 1.0e-96 357.5 272 65.1
HPP92_027733 Vanilla planifolia HOM05D005146 ORTHO05D006752 1.0e-96 357.5 272 63.2
COL.COLO4_37538 Corchorus olitorius HOM05D005146 ORTHO05D006752 1.3e-96 357.1 257 66.1
FAN20G2808 Fragaria x ananassa HOM05D005146 ORTHO05D006752 1.3e-96 357.1 271 62.7
Aqoxy5G01768 Aquilegia oxysepala HOM05D005146 ORTHO05D006752 1.7e-96 356.7 270 64.1
Ca_14210_v3 Cicer arietinum L. HOM05D005146 ORTHO05D006752 1.7e-96 356.7 271 63.5
ATR0797G002 Amborella trichopoda HOM05D005146 ORTHO05D006752 2.2e-96 356.3 276 62.3
MD08G1014100 Malus domestica HOM05D005146 ORTHO05D006752 2.2e-96 356.3 275 61.1
EL10Ac6g13895 Beta vulgaris HOM05D005146 ORTHO05D006752 1.6e-94 350.1 306 57.8
PRCOL_00004436 Prasinoderma coloniale HOM05D005146 ORTHO05D006752 8.0e-94 347.8 293 62.8
arahy.Tifrunner.gnm1.ann1.NX94TN Arachis hypogaea HOM05D005146 ORTHO05D006752 1.0e-93 347.4 301 58.1
Gorai.004G015300 Gossypium raimondii HOM05D005146 ORTHO05D006752 5.2e-93 345.1 270 61.5
Duzib150G0501 Durio zibethinus HOM05D005146 ORTHO05D006752 1.5e-92 343.6 270 61.1
Aqoxy6G00492 Aquilegia oxysepala HOM05D005146 ORTHO05D006752 5.7e-92 341.7 273 61.2
SalBow3G2629 Salvia bowleyana HOM05D005146 ORTHO05D006752 2.2e-88 329.7 242 64.5
ClCG08G014400 Citrullus lanatus HOM05D005146 ORTHO05D006752 2.9e-88 329.3 271 59.8
MCO08G273 Micromonas commoda HOM05D005146 ORTHO05D006752 8.5e-88 327.8 262 61.8
MELO3C011001.2 Cucumis melo HOM05D005146 ORTHO05D006752 7.2e-87 324.7 283 58.7
Peaxi162Scf00438g00626 Petunia axillaris HOM05D005146 ORTHO05D006752 1.6e-86 323.6 270 60.7
HPP92_026026 Vanilla planifolia HOM05D005146 ORTHO05D006752 1.3e-83 313.9 244 63.1
MBI09_g15694_MAGBIO Magnolia biondii HOM05D005146 ORTHO05D006752 6.3e-83 311.6 386 44.8
CDE05G1835 Ceratophyllum demersum HOM05D005146 ORTHO05D006752 5.3e-82 308.5 242 61.2
vmacro21720 Vaccinium macrocarpon HOM05D005146 ORTHO05D006752 4.5e-81 305.4 222 64.9
Hma1.2p1_0638F.1_g193760 Hydrangea macrophylla HOM05D005146 ORTHO05D006752 5.9e-81 305.1 217 64.5
CSS0032399 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 2.1e-78 296.6 252 59.9
Haze_26822 Corylus avellana HOM05D005146 ORTHO05D006752 4.4e-76 288.9 270 51.1
TAR628G0140 Trochodendron aralioides HOM05D005146 ORTHO05D006752 1.7e-75 287.0 196 67.3
RcHm_v2.0_Chr7g0221331 Rosa chinensis HOM05D005146 ORTHO05D006752 1.1e-74 284.3 271 54.2
Lsat_1_v5_gn_2_8681 Lactuca sativa HOM05D004999 ORTHO05D007513 2.7e-73 279.6 221 62.9
Sc26g0004380 Simmondsia chinensis HOM05D005146 ORTHO05D006752 1.6e-70 270.4 185 68.1
C09p44220 Brassica napus HOM05D005146 ORTHO05D006752 1.4e-69 267.3 267 51.3
BolC8t49001H Brassica oleracea HOM05D005146 ORTHO05D006752 2.0e-68 263.5 266 51.9
C08p13630 Brassica napus HOM05D005146 ORTHO05D006752 7.5e-68 261.5 266 51.5
BcaC04g20385 Brassica carinata HOM05D005146 ORTHO05D006752 5.0e-64 248.8 267 50.2
ATR0816G001 Amborella trichopoda HOM05D005146 ORTHO05D006752 1.5e-60 237.3 168 69.0
MSTRG.25237 Avicennia marina HOM05D005146 ORTHO05D006752 2.0e-57 226.9 159 65.4
BcaC04g20389 Brassica carinata HOM05D005146 ORTHO05D006752 2.0e-57 226.9 267 45.7
Oeu039057.1 Olea europaea HOM05D005146 ORTHO05D006752 3.9e-56 222.6 242 50.0
Lj4A797T61 Lonicera japonica HOM05D005146 ORTHO05D006752 1.2e-52 211.1 152 67.8
Medtr1g107520 Medicago truncatula HOM05D005146 ORTHO05D006752 2.7e-49 199.9 165 61.2
AUR62036170 Chenopodium quinoa HOM05D005146 ORTHO05D006752 9.5e-47 191.4 208 48.6
BcaC04g20387 Brassica carinata HOM05D005146 ORTHO05D006752 1.1e-39 167.9 266 39.8
BolC9t57294H Brassica oleracea HOM05D005146 ORTHO05D006752 5.2e-37 159.1 154 52.6
Duzib170G0783 Durio zibethinus HOM05D005146 ORTHO05D006752 1.0e-32 144.8 277 34.3
MELO3C029148.2 Cucumis melo HOM05D005146 ORTHO05D006752 1.9e-31 140.6 151 52.3
BcaC04g20388 Brassica carinata HOM05D005146 ORTHO05D006752 7.6e-28 128.6 178 43.3
CSS0002428 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 3.2e-26 123.2 267 33.7
Oeu039054.1 Olea europaea HOM05D000784 ORTHO05D000116 3.2e-26 123.2 79 69.6
SEGI_30125 Sequoiadendron giganteum HOM05D005146 ORTHO05D006752 4.2e-26 122.9 95 66.3
Lj4A797T60 Lonicera japonica HOM05D005146 ORTHO05D006752 6.6e-24 115.5 91 57.1
Medtr3g114210 Medicago truncatula HOM05D005146 ORTHO05D006752 9.6e-23 111.7 159 43.4
Lsat_1_v5_gn_2_8581 Lactuca sativa HOM05D000202 ORTHO05D000117 6.9e-21 105.5 157 37.6
Lsat_1_v5_gn_2_8661 Lactuca sativa HOM05D000202 ORTHO05D000117 5.8e-20 102.4 157 36.9
BolC8t52160H Brassica oleracea HOM05D005146 ORTHO05D032927 1.4e-18 97.8 254 31.1
BcaC07g41610 Brassica carinata HOM05D005146 ORTHO05D032927 1.8e-16 90.9 262 29.4
C08p46100 Brassica napus HOM05D005146 ORTHO05D032927 6.2e-14 82.4 96 44.8
MELO3C032066.2 Cucumis melo HOM05D005146 ORTHO05D006752 2.2e-11 73.9 89 47.2
BcaNung04119 Brassica carinata HOM05D001941 ORTHO05D002198 7.9e-09 65.5 89 43.8
CAN.G1688.3 Capsicum annuum HOM05D005146 ORTHO05D011342 7.9e-09 65.5 53 52.8
Actinidia16979 Actinidia chinensis HOM05D005146 ORTHO05D006752 2.1e-06 57.4 69 43.5


User provided reference genes

Program Settings