Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g41443 Chara braunii HOM05D001860 ORTHO05D004922 2.8e-288 994.6 496 100.0
Mapoly0002s0191 Marchantia polymorpha HOM05D001860 ORTHO05D004922 3.0e-40 170.6 301 37.5
Ca_04822_v3 Cicer arietinum L. HOM05D001860 ORTHO05D004922 9.5e-39 165.6 265 39.6
AagrBONN_evm.TU.Sc2ySwM_368.914 Anthoceros agrestis HOM05D001860 ORTHO05D004922 1.2e-38 165.2 269 40.1
FAN12G1253 Fragaria x ananassa HOM05D001860 ORTHO05D004922 4.7e-38 163.3 266 38.3
Psat2g116760 Pisum sativum HOM05D001860 ORTHO05D004922 1.1e-37 162.2 260 39.2
Medtr5g041780 Medicago truncatula HOM05D001860 ORTHO05D004922 2.4e-37 161.0 260 37.7
Glyma.02G109300 Glycine max HOM05D001860 ORTHO05D004922 3.1e-37 160.6 259 39.0
SalBow2G3316 Salvia bowleyana HOM05D001860 ORTHO05D004922 3.1e-37 160.6 268 38.1
TPR.G36138 Trifolium pratense HOM05D001860 ORTHO05D004922 3.1e-37 160.6 214 42.1
FAN07G2810 Fragaria x ananassa HOM05D001860 ORTHO05D004922 5.2e-37 159.8 266 37.6
SMO239G0167 Selaginella moellendorffii HOM05D001860 ORTHO05D004922 8.9e-37 159.1 214 37.9
RcHm_v2.0_Chr4g0439511 Rosa chinensis HOM05D001860 ORTHO05D004922 1.2e-36 158.7 271 37.3
Ciclev10032245m.g Citrus clementina HOM05D001860 ORTHO05D004922 2.6e-36 157.5 262 37.0
Phvul.002G083300 Phaseolus vulgaris HOM05D001860 ORTHO05D004922 2.6e-36 157.5 259 36.7
Cfa008963 Carpinus fangiana HOM05D001860 ORTHO05D004922 3.4e-36 157.1 270 36.3
FAN17G3114 Fragaria x ananassa HOM05D001860 ORTHO05D004922 4.4e-36 156.8 262 37.8
FAN22G1600 Fragaria x ananassa HOM05D001860 ORTHO05D004922 4.4e-36 156.8 266 36.5
Eucgr.B03211 Eucalyptus grandis HOM05D001860 ORTHO05D004922 5.8e-36 156.4 278 39.6
Atru.chr11.1760 Acer truncatum HOM05D001860 ORTHO05D004922 1.7e-35 154.8 268 36.9
Lsat_1_v5_gn_3_52040 Lactuca sativa HOM05D001860 ORTHO05D004922 1.7e-35 154.8 256 35.2
Hund25222 Selenicereus undatus HOM05D001860 ORTHO05D004922 1.7e-35 154.8 211 40.8
EL10Ac6g13236 Beta vulgaris HOM05D001860 ORTHO05D004922 2.2e-35 154.5 265 36.6
Carub.0002s1616 Capsella rubella HOM05D001860 ORTHO05D004922 2.2e-35 154.5 270 36.7
Lj2g0002858 Lotus japonicus HOM05D001860 ORTHO05D004922 2.2e-35 154.5 267 37.1
Oeu028270.1 Olea europaea HOM05D001860 ORTHO05D004922 2.2e-35 154.5 214 39.3
Sp5g24630 Schrenkiella parvula HOM05D001860 ORTHO05D004922 2.2e-35 154.5 268 36.2
HPP92_016837 Vanilla planifolia HOM05D001860 ORTHO05D004922 2.2e-35 154.5 271 37.3
CSS0022995 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 3.8e-35 153.7 262 36.3
HanXRQChr17g0545281 Helianthus annuus HOM05D001860 ORTHO05D004922 3.8e-35 153.7 264 36.0
PSO017G0798 Papaver somniferum HOM05D001860 ORTHO05D004922 3.8e-35 153.7 260 37.3
Pp3c24_6910 Physcomitrium patens HOM05D001860 ORTHO05D004922 3.8e-35 153.7 216 39.4
CARHR062460 Cardamine hirsuta HOM05D001860 ORTHO05D004922 4.9e-35 153.3 261 34.9
Haze_11992 Corylus avellana HOM05D001860 ORTHO05D004922 4.9e-35 153.3 267 36.3
Hma1.2p1_1079F.1_g254970 Hydrangea macrophylla HOM05D001860 ORTHO05D004922 4.9e-35 153.3 261 35.2
PSO478G0757 Papaver somniferum HOM05D001860 ORTHO05D004922 4.9e-35 153.3 261 36.8
ECA246G1483 Erigeron canadensis HOM05D001860 ORTHO05D004922 8.4e-35 152.5 264 36.4
Nn3g17288 Nelumbo nucifera HOM05D001860 ORTHO05D004922 8.4e-35 152.5 267 36.3
Os02g0744100 Oryza sativa ssp. japonica HOM05D001860 ORTHO05D004922 1.1e-34 152.1 258 37.6
TWI31G0055 Tripterygium wilfordii HOM05D001860 ORTHO05D004922 1.4e-34 151.8 271 35.4
arahy.Tifrunner.gnm1.ann1.0UW6S5 Arachis hypogaea HOM05D001860 ORTHO05D004922 1.9e-34 151.4 270 36.7
Potri.008G088500 Populus trichocarpa HOM05D001860 ORTHO05D004922 1.9e-34 151.4 261 36.4
SEGI_35280 Sequoiadendron giganteum HOM05D001860 ORTHO05D004922 1.9e-34 151.4 292 32.5
BraA07t30786Z Brassica rapa HOM05D001860 ORTHO05D004922 2.4e-34 151.0 216 39.8
GSVIVG01019959001 Vitis vinifera HOM05D001860 ORTHO05D004922 2.4e-34 151.0 264 36.4
Lj3A1035T53 Lonicera japonica HOM05D001860 ORTHO05D004922 3.2e-34 150.6 214 38.8
MELO3C012111.2 Cucumis melo HOM05D001860 ORTHO05D004922 4.1e-34 150.2 266 35.3
Thhalv10018913m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 4.1e-34 150.2 216 39.4
Manes.05G104100 Manihot esculenta HOM05D001860 ORTHO05D004922 5.4e-34 149.8 268 36.2
THA.LOC104822184 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 5.4e-34 149.8 215 39.5
ATR0564G196 Amborella trichopoda HOM05D001860 ORTHO05D004922 7.1e-34 149.4 271 33.9
AT1G69523 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 7.1e-34 149.4 267 35.2
CDE06G2440 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 7.1e-34 149.4 211 38.9
CsaV3_5G032900 Cucumis sativus L. HOM05D001860 ORTHO05D004922 9.2e-34 149.1 266 35.0
DCAR_026253 Daucus carota HOM05D001016 ORTHO05D003396 9.2e-34 149.1 273 35.9
Gorai.013G087000 Gossypium raimondii HOM05D001860 ORTHO05D004922 9.2e-34 149.1 218 39.0
SGA_v2.0_scaffold172G38956 Striga asiatica HOM05D001860 ORTHO05D004922 9.2e-34 149.1 289 34.9
TAR629G3174 Trochodendron aralioides HOM05D001860 ORTHO05D004922 9.2e-34 149.1 265 35.1
QL03p068521 Quercus lobata HOM05D001860 ORTHO05D004922 1.2e-33 148.7 261 36.0
Thecc.02G343500 Theobroma cacao HOM05D001860 ORTHO05D004922 1.2e-33 148.7 272 35.7
BcaB03g14720 Brassica carinata HOM05D001860 ORTHO05D004922 1.6e-33 148.3 255 37.3
Duzib248G0566 Durio zibethinus HOM05D001860 ORTHO05D004922 1.6e-33 148.3 216 38.9
MD16G1070300 Malus domestica HOM05D001860 ORTHO05D004922 1.6e-33 148.3 302 35.4
Solyc06g084030.3 Solanum lycopersicum HOM05D001860 ORTHO05D004922 1.6e-33 148.3 257 36.2
Sopen06g035410 Solanum pennellii HOM05D001860 ORTHO05D004922 1.6e-33 148.3 257 35.8
A07p35850 Brassica napus HOM05D001860 ORTHO05D004922 2.1e-33 147.9 266 37.2
CANSAT64G2732 Cannabis sativa HOM05D001860 ORTHO05D004922 2.1e-33 147.9 261 37.5
CAN.G771.16 Capsicum annuum HOM05D001860 ORTHO05D004922 2.1e-33 147.9 214 40.2
Migut.L01273 Erythranthe guttata HOM05D001860 ORTHO05D004922 2.1e-33 147.9 214 40.7
MSTRG.7790 Avicennia marina HOM05D001860 ORTHO05D004922 2.7e-33 147.5 265 36.2
CsaV3_5G032890 Cucumis sativus L. HOM05D001860 ORTHO05D004922 2.7e-33 147.5 270 35.6
Actinidia31905 Actinidia chinensis HOM05D001860 ORTHO05D004922 3.5e-33 147.1 271 34.7
BcaB03g15478 Brassica carinata HOM05D001860 ORTHO05D004922 3.5e-33 147.1 287 35.2
Sp5g24640 Schrenkiella parvula HOM05D001860 ORTHO05D004922 3.5e-33 147.1 270 36.3
PGSC0003DMG400020063 Solanum tuberosum HOM05D001860 ORTHO05D004922 3.5e-33 147.1 227 38.3
THA.LOC104822045 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 3.5e-33 147.1 223 38.1
FvH4_4g31120 Fragaria vesca HOM05D001860 ORTHO05D004922 6.0e-33 146.4 266 36.5
Nitab4.5_0006433g0040 Nicotiana tabacum HOM05D001860 ORTHO05D004922 6.0e-33 146.4 215 39.1
Aa31LG4G11250 Aethionema arabicum HOM05D001860 ORTHO05D004922 7.8e-33 146.0 266 35.3
CiPaw.06G086900 Carya illinoinensis HOM05D001860 ORTHO05D004922 7.8e-33 146.0 288 33.3
Peaxi162Scf01530g00038 Petunia axillaris HOM05D001860 ORTHO05D004922 1.0e-32 145.6 215 40.0
AT1G69526 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 1.3e-32 145.2 216 38.9
Carub.0002s1615 Capsella rubella HOM05D001860 ORTHO05D004922 1.3e-32 145.2 273 34.4
ClCG05G024130 Citrullus lanatus HOM05D001860 ORTHO05D004922 2.3e-32 144.4 264 36.0
Nitab4.5_0001044g0130 Nicotiana tabacum HOM05D001860 ORTHO05D004922 2.3e-32 144.4 215 39.1
C06p40330 Brassica napus HOM05D001860 ORTHO05D004922 3.0e-32 144.1 266 36.5
MBI05_g10765_MAGBIO Magnolia biondii HOM05D001860 ORTHO05D004922 3.0e-32 144.1 263 35.0
AL2G28650 Arabidopsis lyrata HOM05D001860 ORTHO05D004922 5.1e-32 143.3 283 35.3
CDE04G1474 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 5.1e-32 143.3 269 34.6
BolC6t39399H Brassica oleracea HOM05D001860 ORTHO05D004922 8.7e-32 142.5 265 36.2
arahy.Tifrunner.gnm1.ann1.WF3EDY Arachis hypogaea HOM05D001860 ORTHO05D004922 1.1e-31 142.1 299 33.4
BcaC08g46392 Brassica carinata HOM05D001860 ORTHO05D004922 1.1e-31 142.1 264 36.4
Sed0020595 Sechium edule HOM05D001860 ORTHO05D004922 1.1e-31 142.1 272 34.9
AUR62032811 Chenopodium quinoa HOM05D001860 ORTHO05D004922 2.5e-31 141.0 237 36.7
Rhsim12G0064600 Rhododendron simsii HOM05D001860 ORTHO05D004922 2.5e-31 141.0 274 32.8
Aqoxy5G04114 Aquilegia oxysepala HOM05D001860 ORTHO05D004922 3.3e-31 140.6 266 33.8
arahy.Tifrunner.gnm1.ann1.F2WL4X Arachis hypogaea HOM05D001860 ORTHO05D004922 3.3e-31 140.6 299 33.4
Carub.0002s1617 Capsella rubella HOM05D001860 ORTHO05D004922 3.3e-31 140.6 266 35.3
Cc11_g12800 Coffea canephora HOM05D001860 ORTHO05D004922 3.3e-31 140.6 215 40.0
BraA07t31171Z Brassica rapa HOM05D001860 ORTHO05D004922 7.3e-31 139.4 261 36.8
QL03p068489 Quercus lobata HOM05D001860 ORTHO05D004922 7.3e-31 139.4 255 35.3
A07p35830 Brassica napus HOM05D001860 ORTHO05D004922 1.6e-30 138.3 269 33.8
BraA07t31169Z Brassica rapa HOM05D001860 ORTHO05D004922 1.6e-30 138.3 269 33.8
QL03p068503 Quercus lobata HOM05D001860 ORTHO05D004922 3.6e-30 137.1 259 34.7
BcaB03g14715 Brassica carinata HOM05D001860 ORTHO05D004922 4.7e-30 136.7 215 36.7
BraA07t31170Z Brassica rapa HOM05D001860 ORTHO05D004922 4.7e-30 136.7 264 33.3
A07p35840 Brassica napus HOM05D001860 ORTHO05D004922 6.2e-30 136.3 269 33.5
AL2G28640 Arabidopsis lyrata HOM05D001860 ORTHO05D004922 8.1e-30 136.0 186 40.9
Carub.0002s1614 Capsella rubella HOM05D001860 ORTHO05D004922 1.1e-29 135.6 194 39.2
THA.LOC104822044 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 1.4e-29 135.2 292 31.2
BolC6t39396H Brassica oleracea HOM05D001860 ORTHO05D004922 1.8e-29 134.8 264 33.3
BolC6t39398H Brassica oleracea HOM05D001860 ORTHO05D004922 1.8e-29 134.8 264 33.3
Zm00001eb194590 Zea mays HOM05D001860 ORTHO05D004922 2.4e-29 134.4 258 34.9
C06p40340 Brassica napus HOM05D001860 ORTHO05D004922 3.1e-29 134.0 264 33.3
BraA07t31168Z Brassica rapa HOM05D001482 ORTHO05D001499 9.0e-29 132.5 198 37.4
CARHR062480 Cardamine hirsuta HOM05D001860 ORTHO05D004922 9.0e-29 132.5 196 37.8
BcaB03g14714 Brassica carinata HOM05D001860 ORTHO05D004922 1.2e-28 132.1 194 38.1
A07p35820 Brassica napus HOM05D001482 ORTHO05D001499 1.2e-28 132.1 198 37.9
BcaC08g46388 Brassica carinata HOM05D001860 ORTHO05D004922 2.0e-28 131.3 194 37.1
BolC6t39394H Brassica oleracea HOM05D001482 ORTHO05D001499 2.0e-28 131.3 194 37.6
COL.COLO4_22943 Corchorus olitorius HOM05D001860 ORTHO05D004922 2.0e-28 131.3 238 33.6
AT1G69520 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 2.6e-28 131.0 212 37.3
CARHR062450 Cardamine hirsuta HOM05D001860 ORTHO05D004922 2.6e-28 131.0 214 35.0
MELO3C012110.2 Cucumis melo HOM05D001860 ORTHO05D004922 1.3e-27 128.6 300 32.3
unitig_26.g10298 Utricularia gibba HOM05D001860 ORTHO05D004922 2.2e-27 127.9 238 33.2
Thhalv10019583m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 3.8e-27 127.1 199 36.7
Sp5g24610 Schrenkiella parvula HOM05D001860 ORTHO05D004922 1.4e-26 125.2 195 37.9
BcaC08g46390 Brassica carinata HOM05D001860 ORTHO05D004922 4.2e-26 123.6 229 34.1
C06p40380 Brassica napus HOM05D001482 ORTHO05D001499 7.1e-26 122.9 225 33.3
vmacro01268 Vaccinium macrocarpon HOM05D001860 ORTHO05D004922 1.2e-25 122.1 311 29.6
C06p40360 Brassica napus HOM05D001860 ORTHO05D004922 2.1e-25 121.3 230 33.9
SMO137G0248 Selaginella moellendorffii HOM05D001860 ORTHO05D004922 2.7e-25 120.9 189 35.4
Lalb_Chr04g0255941 Lupinus albus HOM05D001860 ORTHO05D004922 2.3e-24 117.9 337 28.2
vmacro01267 Vaccinium macrocarpon HOM05D001860 ORTHO05D004922 2.3e-24 117.9 229 33.6
Sabra08G0066100 Salix brachista HOM05D001860 ORTHO05D004922 5.1e-24 116.7 237 32.9
Gohir.D13G076400 Gossypium hirsutum HOM05D001860 ORTHO05D004922 2.8e-22 110.9 134 42.5
Ah.02g129590 Amaranthus hybridus HOM05D001860 ORTHO05D004922 1.1e-21 109.0 245 31.4
CSS0019961 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 1.1e-21 109.0 130 43.1
Gohir.A13G076700 Gossypium hirsutum HOM05D001860 ORTHO05D004922 1.1e-21 109.0 134 41.8
Prupe.1G276900 Prunus persica HOM05D001860 ORTHO05D004922 1.8e-21 108.2 187 38.0
PGR102G3336 Punica granatum HOM05D001860 ORTHO05D004922 6.9e-21 106.3 134 41.8
Sc11g0002060 Simmondsia chinensis HOM05D001860 ORTHO05D004922 9.9e-20 102.4 169 37.3
AUR62005816 Chenopodium quinoa HOM05D001860 ORTHO05D004922 6.4e-19 99.8 133 39.8
MCO03G556 Micromonas commoda HOM05D001860 ORTHO05D004922 4.2e-18 97.1 180 32.8
PRCOL_00000783 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 1.2e-17 95.5 161 32.9
BcaB03g14717 Brassica carinata HOM05D001860 ORTHO05D004922 3.5e-17 94.0 130 36.9
MCO09G753 Micromonas commoda HOM05D001860 ORTHO05D004922 1.8e-16 91.7 150 35.3
PRCOL_00003589 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 1.5e-15 88.6 202 32.7
Sp5g24620 Schrenkiella parvula HOM05D001860 ORTHO05D004922 1.5e-15 88.6 139 37.4
Aa31LG4G11270 Aethionema arabicum HOM05D001860 ORTHO05D004922 5.6e-15 86.7 222 28.8
BcaC08g45887 Brassica carinata HOM05D001860 ORTHO05D004922 1.3e-14 85.5 125 40.0
Oeu028272.1 Olea europaea HOM05D001860 ORTHO05D004922 1.8e-13 81.6 113 41.6
C06p40370 Brassica napus HOM05D001860 ORTHO05D004922 4.5e-12 77.0 115 40.0
Cre07.g342550 Chlamydomonas reinhardtii HOM05D001860 ORTHO05D004922 7.6e-12 76.3 239 26.4
A07p31570 Brassica napus HOM05D001860 ORTHO05D004922 9.9e-12 75.9 116 39.7
C06p36870 Brassica napus HOM05D000005 ORTHO05D042562 9.9e-12 75.9 116 39.7
Thhalv10019188m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 9.9e-12 75.9 156 30.8
BolC6t38800H Brassica oleracea HOM05D000005 ORTHO05D042562 4.9e-11 73.6 116 38.8
Thecc.01G276100 Theobroma cacao HOM05D001860 ORTHO05D004922 7.1e-10 69.7 86 36.0
Cpa.g.sc350.4 Carica papaya HOM05D001860 ORTHO05D004922 3.3e-07 60.8 129 33.3
CSS0016207 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 7.4e-07 59.7 58 50.0
CSS0034144 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 1.3e-06 58.9 62 50.0
VMungo1383G2064 Vigna mungo HOM05D001860 ORTHO05D004922 2.8e-06 57.8 91 33.0


User provided reference genes

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