Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g4136 Chara braunii HOM05D003848 ORTHO05D004616 5.0e-255 884.8 812 100.0
CANSAT01G1819 Cannabis sativa HOM05D003848 ORTHO05D004616 6.3e-72 276.6 164 82.9
CiPaw.08G106300 Carya illinoinensis HOM05D003848 ORTHO05D004616 2.2e-69 268.1 163 82.8
Cfa003508 Carpinus fangiana HOM05D003848 ORTHO05D004616 2.5e-68 264.6 171 78.9
Ca_09749_v3 Cicer arietinum L. HOM05D003848 ORTHO05D004616 2.5e-68 264.6 166 81.9
Mapoly0051s0007 Marchantia polymorpha HOM05D003848 ORTHO05D004616 5.5e-68 263.5 160 85.0
Potri.002G051500 Populus trichocarpa HOM05D003848 ORTHO05D004616 5.5e-68 263.5 165 80.6
Sabra05G0161100 Salix brachista HOM05D003848 ORTHO05D004616 5.5e-68 263.5 157 82.8
AagrBONN_evm.TU.Sc2ySwM_362.1784 Anthoceros agrestis HOM05D003848 ORTHO05D004616 7.2e-68 263.1 165 82.4
QL01p012613 Quercus lobata HOM05D003848 ORTHO05D004616 1.6e-67 261.9 167 79.6
SHI27493 Sapria himalayana HOM05D004058 ORTHO05D001984 1.6e-67 261.9 162 81.5
GSVIVG01001165001 Vitis vinifera HOM05D003848 ORTHO05D004616 1.6e-67 261.9 157 83.4
Medtr8g028640 Medicago truncatula HOM05D003848 ORTHO05D004616 2.1e-67 261.5 166 80.1
HPP92_009020 Vanilla planifolia HOM05D003848 ORTHO05D004616 2.1e-67 261.5 170 79.4
ATR0332G007 Amborella trichopoda HOM05D003848 ORTHO05D004616 2.7e-67 261.2 157 84.7
SEGI_20713 Sequoiadendron giganteum HOM05D003848 ORTHO05D004616 2.7e-67 261.2 159 83.6
Cfa006159 Carpinus fangiana HOM05D003848 ORTHO05D004616 3.6e-67 260.8 171 77.2
Haze_04691 Corylus avellana HOM05D003848 ORTHO05D004616 3.6e-67 260.8 166 80.1
TPR.G28157 Trifolium pratense HOM05D003848 ORTHO05D004616 3.6e-67 260.8 169 78.7
Atru.chr5.1462 Acer truncatum HOM05D003848 ORTHO05D004616 4.7e-67 260.4 166 78.9
Ah.02g110950 Amaranthus hybridus HOM05D003848 ORTHO05D004616 4.7e-67 260.4 171 78.4
Phvul.007G172800 Phaseolus vulgaris HOM05D003848 ORTHO05D004616 4.7e-67 260.4 173 78.6
Psat4g156760 Pisum sativum HOM05D003848 ORTHO05D004616 4.7e-67 260.4 166 81.3
COL.COLO4_09072 Corchorus olitorius HOM05D003848 ORTHO05D004616 6.1e-67 260.0 162 82.1
MD11G1283600 Malus domestica HOM05D003848 ORTHO05D004616 6.1e-67 260.0 152 84.9
VMungo0720G2447 Vigna mungo HOM05D003848 ORTHO05D004616 6.1e-67 260.0 173 78.6
arahy.Tifrunner.gnm1.ann1.ARWK2P Arachis hypogaea HOM05D003848 ORTHO05D004616 1.0e-66 259.2 163 80.4
arahy.Tifrunner.gnm1.ann1.X3NAFX Arachis hypogaea HOM05D003848 ORTHO05D004616 1.0e-66 259.2 163 80.4
Cpa.g.sc52.49 Carica papaya HOM05D003848 ORTHO05D004616 1.0e-66 259.2 152 85.5
MD03G1262900 Malus domestica HOM05D003848 ORTHO05D004616 1.4e-66 258.8 152 84.9
Haze_16066 Corylus avellana HOM05D003848 ORTHO05D004616 1.8e-66 258.5 165 79.4
FvH4_4g12190 Fragaria vesca HOM05D003848 ORTHO05D004616 1.8e-66 258.5 161 82.0
FAN07G0259 Fragaria x ananassa HOM05D003848 ORTHO05D004616 1.8e-66 258.5 161 82.0
FAN22G1557 Fragaria x ananassa HOM05D003848 ORTHO05D004616 1.8e-66 258.5 161 82.0
Glyma.02G146600 Glycine max HOM05D003848 ORTHO05D004616 1.8e-66 258.5 167 79.0
Glyma.10G027400 Glycine max HOM05D003848 ORTHO05D004616 1.8e-66 258.5 167 79.0
Pp3c9_17960 Physcomitrium patens HOM05D003848 ORTHO05D004616 1.8e-66 258.5 166 79.5
RcHm_v2.0_Chr4g0409951 Rosa chinensis HOM05D003848 ORTHO05D004616 1.8e-66 258.5 161 82.0
TWI59G1147 Tripterygium wilfordii HOM05D003848 ORTHO05D004616 1.8e-66 258.5 158 82.9
ATR0824G270 Amborella trichopoda HOM05D003848 ORTHO05D004616 2.3e-66 258.1 157 84.1
Dinv32920 Davidia involucrata HOM05D003848 ORTHO05D004616 3.0e-66 257.7 169 76.9
FAN17G2080 Fragaria x ananassa HOM05D003848 ORTHO05D004616 3.0e-66 257.7 163 80.4
Hma1.2p1_0822F.1_g224390 Hydrangea macrophylla HOM05D003848 ORTHO05D004616 3.0e-66 257.7 165 77.6
Potri.005G210900 Populus trichocarpa HOM05D003848 ORTHO05D004616 3.0e-66 257.7 152 84.2
Ciclev10019827m.g Citrus clementina HOM05D003848 ORTHO05D004616 3.9e-66 257.3 171 77.8
Gohir.A12G004500 Gossypium hirsutum HOM05D003848 ORTHO05D004616 3.9e-66 257.3 160 80.6
Gohir.D12G004200 Gossypium hirsutum HOM05D003848 ORTHO05D004616 3.9e-66 257.3 160 80.6
Gorai.008G004000 Gossypium raimondii HOM05D003848 ORTHO05D004616 3.9e-66 257.3 160 80.6
THA.LOC104801238 Tarenaya hassleriana HOM05D003848 ORTHO05D004616 3.9e-66 257.3 153 83.7
Cc00_g04130 Coffea canephora HOM05D003848 ORTHO05D004616 6.7e-66 256.5 163 80.4
Cc01_g10690 Coffea canephora HOM05D003848 ORTHO05D004616 6.7e-66 256.5 163 80.4
MBI07_g03188_MAGBIO Magnolia biondii HOM05D003848 ORTHO05D004616 6.7e-66 256.5 178 75.3
Prupe.8G239200 Prunus persica HOM05D003848 ORTHO05D004616 6.7e-66 256.5 171 77.8
CDE06G2067 Ceratophyllum demersum HOM05D003848 ORTHO05D004616 8.8e-66 256.1 168 77.4
Thecc.01G276600 Theobroma cacao HOM05D003848 ORTHO05D004616 1.5e-65 255.4 177 74.6
MSTRG.21553 Avicennia marina HOM05D003848 ORTHO05D004616 2.0e-65 255.0 160 80.6
Migut.D00312 Erythranthe guttata HOM05D003848 ORTHO05D004616 2.0e-65 255.0 166 78.3
Nitab4.5_0006700g0010 Nicotiana tabacum HOM05D003848 ORTHO05D004616 3.3e-65 254.2 166 78.9
Zm00001eb314820 Zea mays HOM05D003848 ORTHO05D004616 3.3e-65 254.2 164 81.1
Nitab4.5_0005156g0010 Nicotiana tabacum HOM05D003848 ORTHO05D004616 4.4e-65 253.8 166 78.9
TAR633G0718 Trochodendron aralioides HOM05D003848 ORTHO05D004616 4.4e-65 253.8 167 78.4
PGR119G0967 Punica granatum HOM05D003848 ORTHO05D004616 5.7e-65 253.4 152 84.2
Aa31LG5G2360 Aethionema arabicum HOM05D003848 ORTHO05D004616 7.4e-65 253.1 157 79.6
THA.LOC104825995 Tarenaya hassleriana HOM05D003848 ORTHO05D004616 7.4e-65 253.1 153 83.0
Lalb_Chr06g0162931 Lupinus albus HOM05D003848 ORTHO05D004616 1.3e-64 252.3 168 77.4
Nn1g02285 Nelumbo nucifera HOM05D003848 ORTHO05D004616 1.3e-64 252.3 165 77.6
HanXRQChr01g0002971 Helianthus annuus HOM05D003848 ORTHO05D004616 1.7e-64 251.9 161 78.9
DCAR_000720 Daucus carota HOM05D003848 ORTHO05D004616 2.2e-64 251.5 157 81.5
SGA_v2.0_scaffold1G00491 Striga asiatica HOM05D003848 ORTHO05D004616 2.2e-64 251.5 160 80.0
AagrBONN_evm.TU.Sc2ySwM_344.5133 Anthoceros agrestis HOM05D003848 ORTHO05D004616 2.8e-64 251.1 143 88.1
SMO231G0049 Selaginella moellendorffii HOM05D003848 ORTHO05D004616 2.8e-64 251.1 170 77.6
unitig_0.g1040 Utricularia gibba HOM05D003848 ORTHO05D004616 4.8e-64 250.4 159 79.2
Aqoxy2G03377 Aquilegia oxysepala HOM05D003848 ORTHO05D004616 1.1e-63 249.2 170 75.9
PGSC0003DMG400046756 Solanum tuberosum HOM05D003848 ORTHO05D004616 1.1e-63 249.2 171 77.8
EL10Ac5g10556 Beta vulgaris HOM05D003848 ORTHO05D004616 1.4e-63 248.8 166 75.3
Sp6g02650 Schrenkiella parvula HOM05D003848 ORTHO05D004616 1.4e-63 248.8 161 78.3
SMO351G0411 Selaginella moellendorffii HOM05D003848 ORTHO05D004616 1.4e-63 248.8 160 80.6
TAR369G1095 Trochodendron aralioides HOM05D003848 ORTHO05D004616 1.4e-63 248.8 165 77.6
vmacro18863 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 1.4e-63 248.8 159 79.2
CAN.G439.4 Capsicum annuum HOM05D003848 ORTHO05D004616 1.8e-63 248.4 169 78.1
Lj5g0005692 Lotus japonicus HOM05D003848 ORTHO05D004616 1.8e-63 248.4 169 75.7
Actinidia24902 Actinidia chinensis HOM05D003848 ORTHO05D004616 2.4e-63 248.1 161 78.9
Carub.0006s3439 Capsella rubella HOM05D003848 ORTHO05D004616 2.4e-63 248.1 168 75.0
CARHR251050 Cardamine hirsuta HOM05D003848 ORTHO05D004616 2.4e-63 248.1 158 79.7
AT4G02720 Arabidopsis thaliana HOM05D003848 ORTHO05D004616 3.1e-63 247.7 166 75.9
ClCG10G016420 Citrullus lanatus HOM05D003848 ORTHO05D004616 3.1e-63 247.7 157 80.3
Lj1C175T4 Lonicera japonica HOM05D003848 ORTHO05D004616 3.1e-63 247.7 158 79.7
Lj2C1116T3 Lonicera japonica HOM05D003848 ORTHO05D004616 3.1e-63 247.7 158 79.7
Thhalv10028691m.g Eutrema salsugineum HOM05D003848 ORTHO05D004616 4.1e-63 247.3 161 77.6
Oeu028073.1 Olea europaea HOM05D003848 ORTHO05D004616 4.1e-63 247.3 156 78.2
Rhsim01G0273900 Rhododendron simsii HOM05D003848 ORTHO05D004616 4.1e-63 247.3 159 79.2
MELO3C009735.2 Cucumis melo HOM05D003848 ORTHO05D004616 5.3e-63 246.9 157 80.3
CsaV3_3G039920 Cucumis sativus L. HOM05D003848 ORTHO05D004616 5.3e-63 246.9 157 80.3
Oeu041715.2 Olea europaea HOM05D003848 ORTHO05D004616 5.3e-63 246.9 163 74.8
Solyc11g071660.1 Solanum lycopersicum HOM05D003848 ORTHO05D004616 5.3e-63 246.9 171 77.2
Sopen11g029330 Solanum pennellii HOM05D003848 ORTHO05D004616 5.3e-63 246.9 171 77.2
vmacro19513 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 7.0e-63 246.5 158 79.1
Manes.05G077600 Manihot esculenta HOM05D003848 ORTHO05D004616 1.0e-61 242.7 133 89.5
BcaB01g02014 Brassica carinata HOM05D003848 ORTHO05D004616 1.3e-61 242.3 155 76.8
Sed0011367 Sechium edule HOM05D003848 ORTHO05D004616 1.3e-61 242.3 155 81.9
Sc24g0003320 Simmondsia chinensis HOM05D003848 ORTHO05D004616 1.7e-61 241.9 150 82.0
Lsat_1_v5_gn_5_184160 Lactuca sativa HOM05D003848 ORTHO05D004616 2.2e-61 241.5 162 76.5
PSO210G3188 Papaver somniferum HOM05D003848 ORTHO05D004616 2.2e-61 241.5 157 80.9
PSO832G2619 Papaver somniferum HOM05D003848 ORTHO05D004616 2.2e-61 241.5 157 80.9
Hund11854 Selenicereus undatus HOM05D003848 ORTHO05D004616 3.8e-61 240.7 149 81.2
AUR62017852 Chenopodium quinoa HOM05D003848 ORTHO05D004616 5.0e-61 240.4 152 80.9
AL6G50290 Arabidopsis lyrata HOM05D003848 ORTHO05D004616 6.5e-61 240.0 157 77.1
AUR62003538 Chenopodium quinoa HOM05D003848 ORTHO05D004616 6.5e-61 240.0 152 80.9
ECA248G3600 Erigeron canadensis HOM05D003848 ORTHO05D004616 6.5e-61 240.0 163 74.8
C03p93080 Brassica napus HOM05D003848 ORTHO05D004616 8.5e-61 239.6 170 72.9
FAN22G0164 Fragaria x ananassa HOM05D003848 ORTHO05D004616 1.1e-60 239.2 151 82.1
BcaC01g01560 Brassica carinata HOM05D003848 ORTHO05D004616 1.9e-60 238.4 161 75.2
Duzib177G1090 Durio zibethinus HOM05D003848 ORTHO05D004616 3.2e-60 237.7 155 75.5
Manes.01G206800 Manihot esculenta HOM05D003848 ORTHO05D004616 1.8e-58 231.9 155 76.8
Peaxi162Scf00217g00025 Petunia axillaris HOM05D003848 ORTHO05D004616 1.8e-58 231.9 161 76.4
C03p93150 Brassica napus HOM05D003848 ORTHO05D004616 1.2e-57 229.2 153 75.2
A09p02120 Brassica napus HOM05D003848 ORTHO05D004616 2.0e-57 228.4 126 87.3
BolC8t51344H Brassica oleracea HOM05D003848 ORTHO05D004616 2.0e-57 228.4 126 87.3
BraA09t35861Z Brassica rapa HOM05D003848 ORTHO05D004616 2.0e-57 228.4 126 87.3
C08p37610 Brassica napus HOM05D003848 ORTHO05D004616 5.7e-57 226.9 125 87.2
BolC9t53150H Brassica oleracea HOM05D003848 ORTHO05D004616 5.7e-57 226.9 125 87.2
BcaC01g01554 Brassica carinata HOM05D003848 ORTHO05D004616 7.5e-57 226.5 131 84.0
BolC3t21610H Brassica oleracea HOM05D003848 ORTHO05D004616 2.2e-56 224.9 125 86.4
C03p93070 Brassica napus HOM05D003848 ORTHO05D004616 8.2e-56 223.0 130 83.1
BraA04t17534Z Brassica rapa HOM05D003848 ORTHO05D004616 1.1e-55 222.6 169 69.2
BcaC04g24009 Brassica carinata HOM05D003848 ORTHO05D004616 1.8e-55 221.9 125 85.6
C03p93100 Brassica napus HOM05D003848 ORTHO05D004616 2.4e-55 221.5 124 86.3
C09p02220 Brassica napus HOM05D003848 ORTHO05D004616 7.0e-55 219.9 159 69.8
BcaC01g01558 Brassica carinata HOM05D003848 ORTHO05D004616 1.2e-54 219.2 123 86.2
TPR.G23082 Trifolium pratense HOM05D003848 ORTHO05D004616 5.9e-54 216.9 130 83.8
A09p30470 Brassica napus HOM05D003848 ORTHO05D004616 1.0e-53 216.1 130 81.5
A09p54740 Brassica napus HOM05D003848 ORTHO05D004616 1.0e-53 216.1 120 86.7
BolC3t21613H Brassica oleracea HOM05D003848 ORTHO05D004616 1.0e-53 216.1 124 83.9
A04p19390 Brassica napus HOM05D003848 ORTHO05D004616 3.8e-53 214.2 163 69.3
C09p02210 Brassica napus HOM05D003848 ORTHO05D004616 6.5e-53 213.4 120 85.8
BcaC02g08380 Brassica carinata HOM05D003848 ORTHO05D004616 2.5e-52 211.5 153 72.5
QL03p072399 Quercus lobata HOM05D003848 ORTHO05D004616 5.5e-52 210.3 143 75.5
BcaC01g01561 Brassica carinata HOM05D003848 ORTHO05D004616 1.2e-51 209.1 121 83.5
C04p54970 Brassica napus HOM05D003848 ORTHO05D004616 2.1e-51 208.4 132 80.3
BolC4t27032H Brassica oleracea HOM05D003848 ORTHO05D004616 2.1e-51 208.4 132 80.3
Rhsim10G0030500 Rhododendron simsii HOM05D003848 ORTHO05D004616 3.4e-49 201.1 138 76.1
CDE07G1463 Ceratophyllum demersum HOM05D003848 ORTHO05D004616 1.0e-45 189.5 168 61.9
Ca_04836_v3 Cicer arietinum L. HOM05D001515 ORTHO05D004616 7.5e-41 173.3 114 78.9
SalBow4G2167 Salvia bowleyana HOM05D003848 ORTHO05D004616 7.5e-41 173.3 161 59.0
C03p93140 Brassica napus HOM05D003848 ORTHO05D004616 2.8e-40 171.4 123 74.0
arahy.Tifrunner.gnm1.ann1.3GG3GM Arachis hypogaea HOM05D004461 ORTHO05D005543 4.9e-40 170.6 121 72.7
BcaC03g13677 Brassica carinata HOM05D003848 ORTHO05D004616 4.1e-39 167.5 130 69.2
MCO02G035 Micromonas commoda HOM05D003848 ORTHO05D004616 7.0e-39 166.8 106 79.2
Nn4g26302 Nelumbo nucifera HOM05D003848 ORTHO05D004616 3.5e-38 164.5 101 80.2
Oeu017054.1 Olea europaea HOM05D004271 ORTHO05D006011 1.7e-37 162.2 125 69.6
SGA_v2.0_scaffold138G35328 Striga asiatica HOM05D003848 ORTHO05D004616 1.7e-37 162.2 150 58.0
BcaC03g16168 Brassica carinata HOM05D003848 ORTHO05D004616 1.5e-36 159.1 94 80.9
Hma1.2p1_0667F.1_g199770 Hydrangea macrophylla HOM05D003848 ORTHO05D004616 1.4e-34 152.5 87 85.1
PRCOL_00001828 Prasinoderma coloniale HOM05D003848 ORTHO05D004616 1.5e-33 149.1 105 69.5
Cre01.g032250 Chlamydomonas reinhardtii HOM05D003848 ORTHO05D004616 7.5e-33 146.7 163 52.1
Haze_27548 Corylus avellana HOM05D003848 ORTHO05D004616 2.7e-30 138.3 103 62.1
BraA09t40884Z Brassica rapa HOM05D003848 ORTHO05D004616 1.0e-29 136.3 75 86.7
BraA09t38617Z Brassica rapa HOM05D003848 ORTHO05D004616 1.7e-29 135.6 82 80.5
Os09g0455400 Oryza sativa ssp. japonica HOM05D003848 ORTHO05D004616 6.6e-29 133.7 71 91.5
C02p39120 Brassica napus HOM05D003848 ORTHO05D004616 4.4e-25 120.9 75 77.3
BolC2t09922H Brassica oleracea HOM05D003848 ORTHO05D004616 1.3e-24 119.4 75 76.0
Actinidia21120 Actinidia chinensis HOM05D003848 ORTHO05D004616 3.5e-22 111.3 162 46.3
BNapus_Darmor_BZH_scaffold_38p02460 Brassica napus HOM05D003848 ORTHO05D004616 1.7e-21 109.0 69 76.8
BNapus_Darmor_BZH_scaffold_38p02440 Brassica napus HOM05D003848 ORTHO05D004616 3.9e-21 107.8 66 80.3
unitig_0.g1042 Utricularia gibba HOM05D003848 ORTHO05D004616 8.6e-21 106.7 59 89.8
FAN22G1718 Fragaria x ananassa HOM05D003848 ORTHO05D004616 6.2e-19 100.5 74 68.9
BolC2t06954H Brassica oleracea HOM05D003848 ORTHO05D004616 4.0e-18 97.8 66 75.8
MD07G1100600 Malus domestica HOM05D003848 ORTHO05D004616 6.8e-18 97.1 56 87.5
Ca_05843_v3 Cicer arietinum L. HOM05D003848 ORTHO05D004616 7.5e-17 93.6 51 86.3
Prupe.6G167600 Prunus persica HOM05D003848 ORTHO05D004616 8.3e-16 90.1 56 82.1
vmacro19512 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 1.7e-13 82.4 97 49.5


User provided reference genes

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