Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g41281 Chara braunii HOM05D025896 ORTHO05D026608 1.2e-184 649.8 349 100.0
MBI14_g41835_MAGBIO Magnolia biondii HOM05D003100 ORTHO05D003533 7.7e-19 99.0 92 51.1
MBI14_g13656_MAGBIO Magnolia biondii HOM05D003100 ORTHO05D003533 2.9e-18 97.1 92 50.0
TAR629G2407 Trochodendron aralioides HOM05D003100 ORTHO05D003533 2.5e-17 94.0 92 48.9
Nn3g17619 Nelumbo nucifera HOM05D003100 ORTHO05D003533 2.1e-16 90.9 87 50.6
Aqoxy3G00625 Aquilegia oxysepala HOM05D003100 ORTHO05D003533 8.0e-16 89.0 85 49.4
Nn4g23624 Nelumbo nucifera HOM05D003100 ORTHO05D003533 6.8e-15 85.9 83 49.4
PSO017G5592 Papaver somniferum HOM05D003100 ORTHO05D003533 6.8e-15 85.9 92 46.7
PSO478G4760 Papaver somniferum HOM05D003100 ORTHO05D003533 6.8e-15 85.9 92 46.7
CDE02G4570 Ceratophyllum demersum HOM05D003100 ORTHO05D003533 1.5e-14 84.7 106 42.5
Aqoxy3G00626 Aquilegia oxysepala HOM05D003100 ORTHO05D003533 2.0e-14 84.3 84 45.2
Pp3c16_2800 Physcomitrium patens HOM05D003100 ORTHO05D003533 5.7e-14 82.8 80 50.0
SEGI_34483 Sequoiadendron giganteum HOM05D003100 ORTHO05D003533 5.7e-14 82.8 88 48.9
Mapoly0019s0108 Marchantia polymorpha HOM05D025896 ORTHO05D026608 7.5e-14 82.4 118 37.3
SEGI_12591 Sequoiadendron giganteum HOM05D003100 ORTHO05D003533 9.8e-14 82.0 87 47.1
Pp3c5_9640 Physcomitrium patens HOM05D003100 ORTHO05D003533 2.8e-13 80.5 79 46.8
HPP92_022563 Vanilla planifolia HOM05D003100 ORTHO05D003533 2.8e-13 80.5 93 44.1
PSO017G0749 Papaver somniferum HOM05D003100 ORTHO05D003533 3.7e-13 80.1 84 45.2
PSO478G4281 Papaver somniferum HOM05D003100 ORTHO05D003533 6.3e-13 79.3 83 43.4
PSO017G1960 Papaver somniferum HOM05D003100 ORTHO05D003533 8.3e-13 79.0 83 43.4
Phvul.008G022000 Phaseolus vulgaris HOM05D003100 ORTHO05D003533 2.4e-12 77.4 92 43.5
AagrBONN_evm.TU.Sc2ySwM_344.4459 Anthoceros agrestis HOM05D025896 ORTHO05D026608 3.1e-12 77.0 130 32.3
ATR0691G082 Amborella trichopoda HOM05D003100 ORTHO05D003533 7.0e-12 75.9 87 43.7
Pp3c17_4560 Physcomitrium patens HOM05D003100 ORTHO05D003533 7.0e-12 75.9 87 41.4
Pp3c14_19870 Physcomitrium patens HOM05D025896 ORTHO05D026608 9.1e-12 75.5 132 34.8
Lsat_1_v5_gn_3_94760 Lactuca sativa HOM05D003100 ORTHO05D003533 1.2e-11 75.1 92 38.0
Mapoly0001s0130 Marchantia polymorpha HOM05D003100 ORTHO05D003533 1.2e-11 75.1 90 46.7
MSTRG.23839 Avicennia marina HOM05D003100 ORTHO05D003533 1.6e-11 74.7 92 41.3
Dinv33903 Davidia involucrata HOM05D003100 ORTHO05D003533 1.6e-11 74.7 92 38.0
SEGI_38529 Sequoiadendron giganteum HOM05D003100 ORTHO05D003533 1.6e-11 74.7 79 46.8
Lsat_1_v5_gn_4_175400 Lactuca sativa HOM05D003100 ORTHO05D003533 2.0e-11 74.3 92 39.1
PSO478G3282 Papaver somniferum HOM05D003100 ORTHO05D003533 2.0e-11 74.3 84 44.0
VMungo1383G1643 Vigna mungo HOM05D003100 ORTHO05D003533 2.0e-11 74.3 92 43.5
arahy.Tifrunner.gnm1.ann1.M9SN56 Arachis hypogaea HOM05D003100 ORTHO05D003533 4.5e-11 73.2 91 41.8
arahy.Tifrunner.gnm1.ann1.WK1M58 Arachis hypogaea HOM05D003100 ORTHO05D003533 4.5e-11 73.2 91 41.8
Hma1.2p1_0588F.1_g184460 Hydrangea macrophylla HOM05D003100 ORTHO05D003533 5.9e-11 72.8 92 39.1
SMO143G0150 Selaginella moellendorffii HOM05D003100 ORTHO05D003533 7.7e-11 72.4 93 44.1
ECA246G4196 Erigeron canadensis HOM05D003100 ORTHO05D003533 1.7e-10 71.2 93 35.5
Dinv34874 Davidia involucrata HOM05D003100 ORTHO05D003533 2.3e-10 70.9 106 36.8
HanXRQChr12g0380861 Helianthus annuus HOM05D003100 ORTHO05D003533 2.3e-10 70.9 92 35.9
Rhsim08G0080700 Rhododendron simsii HOM05D003100 ORTHO05D003533 2.3e-10 70.9 84 44.0
Manes.02G063900 Manihot esculenta HOM05D003100 ORTHO05D003533 2.9e-10 70.5 84 42.9
Lj4A128T78 Lonicera japonica HOM05D003100 ORTHO05D003533 3.8e-10 70.1 92 37.0
Lalb_Chr04g0258211 Lupinus albus HOM05D003100 ORTHO05D003533 3.8e-10 70.1 92 37.0
Os10g0550900 Oryza sativa ssp. japonica HOM05D003100 ORTHO05D003533 3.8e-10 70.1 81 45.7
Cc07_g04870 Coffea canephora HOM05D003100 ORTHO05D003533 5.0e-10 69.7 93 37.6
Lj1g0011783 Lotus japonicus HOM05D003100 ORTHO05D003533 5.0e-10 69.7 92 38.0
QL02p053864 Quercus lobata HOM05D003100 ORTHO05D003533 5.0e-10 69.7 94 39.4
Solyc02g089620.3 Solanum lycopersicum HOM05D003100 ORTHO05D003533 5.0e-10 69.7 92 35.9
Eucgr.J01449 Eucalyptus grandis HOM05D003100 ORTHO05D003533 6.5e-10 69.3 92 38.0
Lalb_Chr02g0158481 Lupinus albus HOM05D003100 ORTHO05D003533 6.5e-10 69.3 84 41.7
Ca_20735_v3 Cicer arietinum L. HOM05D003100 ORTHO05D003533 8.6e-10 68.9 95 43.2
HanXRQChr14g0439411 Helianthus annuus HOM05D003100 ORTHO05D003533 8.6e-10 68.9 92 35.9
Lj7C7T10 Lonicera japonica HOM05D003100 ORTHO05D003533 8.6e-10 68.9 92 33.7
Lju237C1T7 Lonicera japonica HOM05D003100 ORTHO05D003533 8.6e-10 68.9 92 33.7
Solyc02g089630.3 Solanum lycopersicum HOM05D003100 ORTHO05D003533 8.6e-10 68.9 92 37.0
MELO3C022076.2 Cucumis melo HOM05D003100 ORTHO05D003533 1.1e-09 68.6 92 38.0
Lsat_1_v5_gn_2_86240 Lactuca sativa HOM05D003100 ORTHO05D003533 1.1e-09 68.6 79 39.2
PGR042G3308 Punica granatum HOM05D003100 ORTHO05D003533 1.1e-09 68.6 84 40.5
Sopen02g034350 Solanum pennellii HOM05D003100 ORTHO05D003533 1.1e-09 68.6 92 34.8
PGSC0003DMG400010050 Solanum tuberosum HOM05D003100 ORTHO05D003533 1.1e-09 68.6 92 34.8
Lalb_Chr10g0092411 Lupinus albus HOM05D003100 ORTHO05D003533 1.5e-09 68.2 83 38.6
Lj2g0003797 Lotus japonicus HOM05D003100 ORTHO05D003533 1.9e-09 67.8 95 42.1
Nitab4.5_0006224g0010 Nicotiana tabacum HOM05D003100 ORTHO05D003533 1.9e-09 67.8 92 33.7
Oeu032863.1 Olea europaea HOM05D003100 ORTHO05D003533 1.9e-09 67.8 106 34.9
Zm00001eb022980 Zea mays HOM05D003100 ORTHO05D003533 1.9e-09 67.8 88 43.2
Ca_06719_v3 Cicer arietinum L. HOM05D003100 ORTHO05D003533 2.5e-09 67.4 84 41.7
TPR.G27153 Trifolium pratense HOM05D003100 ORTHO05D003533 2.5e-09 67.4 95 42.1
Ca_20738_v3 Cicer arietinum L. HOM05D003100 ORTHO05D003533 3.3e-09 67.0 76 43.4
Nitab4.5_0001982g0070 Nicotiana tabacum HOM05D003100 ORTHO05D003533 3.3e-09 67.0 92 33.7
Psat1g063160 Pisum sativum HOM05D003100 ORTHO05D003533 3.3e-09 67.0 95 41.1
QL02p054262 Quercus lobata HOM05D003100 ORTHO05D003533 3.3e-09 67.0 95 40.0
Sopen02g034360 Solanum pennellii HOM05D003100 ORTHO05D003533 3.3e-09 67.0 92 35.9
ClCG11G005180 Citrullus lanatus HOM05D003100 ORTHO05D003533 4.2e-09 66.6 92 38.0
Glyma.19G043000 Glycine max HOM05D003100 ORTHO05D003533 4.2e-09 66.6 84 39.3
Cpa.g.sc652.4 Carica papaya HOM05D003100 ORTHO05D003533 5.5e-09 66.2 107 37.4
DCAR_010985 Daucus carota HOM05D003100 ORTHO05D003533 5.5e-09 66.2 106 35.8
Glyma.18G278900 Glycine max HOM05D003100 ORTHO05D003533 5.5e-09 66.2 92 40.2
Gohir.D07G183400 Gossypium hirsutum HOM05D003100 ORTHO05D003533 5.5e-09 66.2 92 37.0
Gorai.001G203800 Gossypium raimondii HOM05D003100 ORTHO05D003533 5.5e-09 66.2 92 37.0
Nitab4.5_0001982g0120 Nicotiana tabacum HOM05D003100 ORTHO05D003533 5.5e-09 66.2 92 35.9
Zm00001eb391720 Zea mays HOM05D003100 ORTHO05D003533 5.5e-09 66.2 88 43.2
Glyma.08G255900 Glycine max HOM05D003100 ORTHO05D003533 7.2e-09 65.9 92 40.2
vmacro18095 Vaccinium macrocarpon HOM05D003100 ORTHO05D003533 7.2e-09 65.9 79 44.3
MSTRG.2953 Avicennia marina HOM05D003100 ORTHO05D003533 9.5e-09 65.5 92 38.0
Glyma.13G049700 Glycine max HOM05D003100 ORTHO05D003533 9.5e-09 65.5 98 38.8
Nitab4.5_0006224g0020 Nicotiana tabacum HOM05D003100 ORTHO05D003533 9.5e-09 65.5 92 35.9
CSS0003182 Camellia sinensis var. sinensis HOM05D003100 ORTHO05D003533 1.2e-08 65.1 107 38.3
Lalb_Chr21g0318041 Lupinus albus HOM05D003100 ORTHO05D003533 1.2e-08 65.1 84 41.7
arahy.Tifrunner.gnm1.ann1.F4PGJ6 Arachis hypogaea HOM05D003100 ORTHO05D003533 1.6e-08 64.7 79 41.8
CAN.G497.23 Capsicum annuum HOM05D003100 ORTHO05D003533 1.6e-08 64.7 92 32.6
CsaV3_5G038920 Cucumis sativus L. HOM05D003100 ORTHO05D003533 1.6e-08 64.7 92 35.9
ECA232G0384 Erigeron canadensis HOM05D003100 ORTHO05D003533 1.6e-08 64.7 92 35.9
Gohir.A07G176300 Gossypium hirsutum HOM05D003100 ORTHO05D003533 1.6e-08 64.7 92 35.9
Medtr7g020820 Medicago truncatula HOM05D003100 ORTHO05D003533 1.6e-08 64.7 86 40.7
CiPaw.03G007100 Carya illinoinensis HOM05D003100 ORTHO05D003533 2.1e-08 64.3 100 36.0
Medtr6g016635 Medicago truncatula HOM05D003100 ORTHO05D003533 2.1e-08 64.3 95 40.0
Medtr6g016640 Medicago truncatula HOM05D003100 ORTHO05D003533 2.1e-08 64.3 95 40.0
Medtr6g016650 Medicago truncatula HOM05D003100 ORTHO05D003533 2.1e-08 64.3 95 40.0
Peaxi162Scf01056g00029 Petunia axillaris HOM05D003100 ORTHO05D003533 2.1e-08 64.3 92 32.6
Psat3g191960 Pisum sativum HOM05D003100 ORTHO05D003533 2.8e-08 63.9 84 42.9
Prupe.3G243500 Prunus persica HOM05D003100 ORTHO05D003533 2.8e-08 63.9 92 35.9
QL05p067729 Quercus lobata HOM05D003100 ORTHO05D003533 2.8e-08 63.9 95 40.0
CiPaw.04G005000 Carya illinoinensis HOM05D003100 ORTHO05D003533 3.6e-08 63.5 100 33.0
CDE01G0074 Ceratophyllum demersum HOM05D003100 ORTHO05D003533 3.6e-08 63.5 81 44.4
FvH4_6g45730 Fragaria vesca HOM05D003100 ORTHO05D003533 3.6e-08 63.5 84 38.1
FAN14G4550 Fragaria x ananassa HOM05D003100 ORTHO05D003533 3.6e-08 63.5 84 38.1
Gohir.A08G035400 Gossypium hirsutum HOM05D003100 ORTHO05D003533 3.6e-08 63.5 106 34.0
unitig_52.g17626 Utricularia gibba HOM05D003100 ORTHO05D003533 3.6e-08 63.5 68 45.6
Duzib138G1201 Durio zibethinus HOM05D003100 ORTHO05D003533 4.7e-08 63.2 106 33.0
HanXRQChr09g0263361 Helianthus annuus HOM05D003100 ORTHO05D003533 6.1e-08 62.8 92 34.8
SalBow1G4995 Salvia bowleyana HOM05D003100 ORTHO05D003533 6.1e-08 62.8 84 36.9
vmacro05594 Vaccinium macrocarpon HOM05D003100 ORTHO05D003533 6.1e-08 62.8 106 34.9
CAN.G497.22 Capsicum annuum HOM05D003100 ORTHO05D003533 8.0e-08 62.4 92 32.6
FAN02G4344 Fragaria x ananassa HOM05D003100 ORTHO05D003533 8.0e-08 62.4 79 39.2
FAN09G0679 Fragaria x ananassa HOM05D003100 ORTHO05D003533 8.0e-08 62.4 84 36.9
ECA238G4761 Erigeron canadensis HOM05D003100 ORTHO05D003533 1.0e-07 62.0 77 33.8
Gohir.D08G046100 Gossypium hirsutum HOM05D003100 ORTHO05D003533 1.0e-07 62.0 106 34.0
Gorai.004G045300 Gossypium raimondii HOM05D003100 ORTHO05D003533 1.0e-07 62.0 106 34.0
MD09G1080200 Malus domestica HOM05D003100 ORTHO05D003533 1.0e-07 62.0 92 35.9
Sed0012021 Sechium edule HOM05D003100 ORTHO05D003533 1.0e-07 62.0 92 35.9
FAN05G4727 Fragaria x ananassa HOM05D003100 ORTHO05D003533 1.4e-07 61.6 84 36.9
Glyma.19G042900 Glycine max HOM05D003100 ORTHO05D003533 1.4e-07 61.6 98 38.8
Peaxi162Scf01056g00030 Petunia axillaris HOM05D003100 ORTHO05D003533 1.4e-07 61.6 82 35.4
Phvul.002G300800 Phaseolus vulgaris HOM05D003100 ORTHO05D003533 1.4e-07 61.6 98 36.7
RcHm_v2.0_Chr2g0163921 Rosa chinensis HOM05D003100 ORTHO05D003533 1.4e-07 61.6 84 36.9
MD17G1070700 Malus domestica HOM05D003100 ORTHO05D003533 1.8e-07 61.2 92 34.8
COL.COLO4_22349 Corchorus olitorius HOM05D003100 ORTHO05D003533 2.3e-07 60.8 103 35.0
Rhsim10G0062800 Rhododendron simsii HOM05D003100 ORTHO05D003533 3.0e-07 60.5 93 38.7
Sed0007198 Sechium edule HOM05D003100 ORTHO05D003533 3.0e-07 60.5 92 35.9
arahy.Tifrunner.gnm1.ann1.BRNL8L Arachis hypogaea HOM05D003100 ORTHO05D003533 5.2e-07 59.7 64 43.8
Potri.004G106400 Populus trichocarpa HOM05D003100 ORTHO05D003533 5.2e-07 59.7 79 38.0
Actinidia18108 Actinidia chinensis HOM05D003100 ORTHO05D003533 6.8e-07 59.3 66 40.9
AUR62014562 Chenopodium quinoa HOM05D003100 ORTHO05D003533 6.8e-07 59.3 92 31.5
AUR62039398 Chenopodium quinoa HOM05D003100 ORTHO05D003533 6.8e-07 59.3 92 31.5
MD17G1206300 Malus domestica HOM05D003100 ORTHO05D003533 6.8e-07 59.3 83 36.1
Sabra17G0091600 Salix brachista HOM05D003100 ORTHO05D003533 6.8e-07 59.3 79 38.0
SGA_v2.0_scaffold1G00268 Striga asiatica HOM05D003100 ORTHO05D003533 6.8e-07 59.3 85 35.3
THA.LOC104805545 Tarenaya hassleriana HOM05D003100 ORTHO05D003533 6.8e-07 59.3 107 36.4
Actinidia36293 Actinidia chinensis HOM05D003100 ORTHO05D003533 8.9e-07 58.9 93 38.7
EL10Ac2g04654 Beta vulgaris HOM05D003100 ORTHO05D003533 8.9e-07 58.9 92 32.6
CSS0002548 Camellia sinensis var. sinensis HOM05D003100 ORTHO05D003533 8.9e-07 58.9 84 36.9
VMungo0464G0582 Vigna mungo HOM05D003100 ORTHO05D003533 8.9e-07 58.9 98 37.8
MSTRG.15423 Avicennia marina HOM05D003100 ORTHO05D003533 1.2e-06 58.5 60 40.0
SGA_v2.0_scaffold52G19026 Striga asiatica HOM05D003100 ORTHO05D003533 1.2e-06 58.5 92 34.8
DCAR_007529 Daucus carota HOM05D003100 ORTHO05D003533 1.5e-06 58.2 87 31.0
DCAR_007530 Daucus carota HOM05D003100 ORTHO05D003533 2.0e-06 57.8 92 33.7
Cfa007989 Carpinus fangiana HOM05D003100 ORTHO05D003533 2.6e-06 57.4 79 41.8
THA.LOC104823874 Tarenaya hassleriana HOM05D003100 ORTHO05D003533 2.6e-06 57.4 107 37.4
Migut.K00871 Erythranthe guttata HOM05D003100 ORTHO05D003533 3.4e-06 57.0 85 36.5
Migut.H00556 Erythranthe guttata HOM05D003100 ORTHO05D003533 5.7e-06 56.2 85 36.5
Potri.017G109300 Populus trichocarpa HOM05D003100 ORTHO05D003533 7.5e-06 55.8 79 36.7
Hund13746 Selenicereus undatus HOM05D003100 ORTHO05D003533 9.8e-06 55.5 85 36.5


User provided reference genes

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