Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g40963 Chara braunii HOM05D001880 ORTHO05D005098 9.3e-116 420.2 215 100.0
CBR_g39177 Chara braunii HOM05D001880 ORTHO05D005098 4.8e-112 407.9 215 97.2
THA.LOC104815053 Tarenaya hassleriana HOM05D001880 ORTHO05D005098 2.5e-92 342.4 216 80.1
Sed0004320 Sechium edule HOM05D001880 ORTHO05D005098 5.5e-92 341.3 216 78.7
Ciclev10009455m.g Citrus clementina HOM05D001880 ORTHO05D005098 2.1e-91 339.3 216 79.2
Mapoly0042s0036 Marchantia polymorpha HOM05D001880 ORTHO05D005098 2.1e-91 339.3 216 80.1
Thhalv10014652m.g Eutrema salsugineum HOM05D001880 ORTHO05D005098 4.7e-91 338.2 216 79.6
THA.LOC104799203 Tarenaya hassleriana HOM05D001880 ORTHO05D005098 6.1e-91 337.8 216 79.2
Carub.0006s0996 Capsella rubella HOM05D001880 ORTHO05D005098 7.9e-91 337.4 216 79.2
arahy.Tifrunner.gnm1.ann1.I4CW6I Arachis hypogaea HOM05D001880 ORTHO05D005098 1.0e-90 337.0 216 78.2
Nn3g18068 Nelumbo nucifera HOM05D001880 ORTHO05D005098 1.0e-90 337.0 216 78.7
Potri.006G241900 Populus trichocarpa HOM05D001880 ORTHO05D005098 1.0e-90 337.0 216 79.2
CARHR201720 Cardamine hirsuta HOM05D001880 ORTHO05D005098 1.4e-90 336.7 216 79.2
AL6G22170 Arabidopsis lyrata HOM05D001880 ORTHO05D005098 1.8e-90 336.3 216 78.7
AT5G11500 Arabidopsis thaliana HOM05D001880 ORTHO05D005098 1.8e-90 336.3 216 78.7
arahy.Tifrunner.gnm1.ann1.0TS4QU Arachis hypogaea HOM05D001880 ORTHO05D005098 1.8e-90 336.3 216 78.2
ClCG11G014050 Citrullus lanatus HOM05D001880 ORTHO05D005098 3.0e-90 335.5 216 77.8
MELO3C003579.2 Cucumis melo HOM05D001880 ORTHO05D005098 3.9e-90 335.1 216 77.8
Sp6g32100 Schrenkiella parvula HOM05D001880 ORTHO05D005098 5.1e-90 334.7 216 78.7
CsaV3_3G047450 Cucumis sativus L. HOM05D001880 ORTHO05D005098 6.7e-90 334.3 216 77.3
TWI63G1366 Tripterygium wilfordii HOM05D001880 ORTHO05D005098 6.7e-90 334.3 216 79.2
BcaB08g37053 Brassica carinata HOM05D001880 ORTHO05D005098 8.8e-90 334.0 216 78.2
Eucgr.C01583 Eucalyptus grandis HOM05D001880 ORTHO05D005098 8.8e-90 334.0 216 79.6
Manes.16G065900 Manihot esculenta HOM05D001880 ORTHO05D005098 8.8e-90 334.0 216 76.9
Potri.018G037800 Populus trichocarpa HOM05D001880 ORTHO05D005098 8.8e-90 334.0 216 78.7
BcaB01g05480 Brassica carinata HOM05D001880 ORTHO05D005098 1.1e-89 333.6 216 78.2
A03p05050 Brassica napus HOM05D001880 ORTHO05D005098 1.1e-89 333.6 216 78.2
A10p26250 Brassica napus HOM05D001880 ORTHO05D005098 1.1e-89 333.6 216 77.8
BraA03t09839Z Brassica rapa HOM05D001880 ORTHO05D005098 1.1e-89 333.6 216 78.2
BraA10t44682Z Brassica rapa HOM05D001880 ORTHO05D005098 1.1e-89 333.6 216 77.8
CAN.G21.29 Capsicum annuum HOM05D001880 ORTHO05D005098 1.1e-89 333.6 216 78.2
Thecc.09G040200 Theobroma cacao HOM05D001880 ORTHO05D005098 1.1e-89 333.6 216 77.8
C03p05780 Brassica napus HOM05D001880 ORTHO05D005098 1.5e-89 333.2 216 77.8
BolC3t13091H Brassica oleracea HOM05D001880 ORTHO05D005098 1.5e-89 333.2 216 77.8
Cpa.g.sc78.78 Carica papaya HOM05D001880 ORTHO05D005098 2.0e-89 332.8 216 78.2
unitig_748.g7799 Utricularia gibba HOM05D001880 ORTHO05D005098 2.0e-89 332.8 216 78.7
Atru.chr7.2156 Acer truncatum HOM05D001880 ORTHO05D005098 2.6e-89 332.4 216 78.2
Nitab4.5_0007240g0010 Nicotiana tabacum HOM05D001880 ORTHO05D005098 3.3e-89 332.0 216 77.8
Sed0015028 Sechium edule HOM05D001880 ORTHO05D005098 3.3e-89 332.0 216 77.3
PGSC0003DMG400010834 Solanum tuberosum HOM05D001880 ORTHO05D005098 3.3e-89 332.0 216 78.2
vmacro07643 Vaccinium macrocarpon HOM05D001880 ORTHO05D005098 3.3e-89 332.0 216 77.3
C09p65340 Brassica napus HOM05D001880 ORTHO05D005098 4.4e-89 331.6 216 77.3
Peaxi162Scf00523g00111 Petunia axillaris HOM05D001880 ORTHO05D005098 4.4e-89 331.6 216 77.8
BcaC03g13368 Brassica carinata HOM05D001880 ORTHO05D005098 5.7e-89 331.3 216 77.8
CSS0008123 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 9.7e-89 330.5 216 77.3
CSS0050171 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 9.7e-89 330.5 216 77.3
Solyc08g068300.3 Solanum lycopersicum HOM05D001880 ORTHO05D005098 9.7e-89 330.5 216 77.8
Sopen08g022150 Solanum pennellii HOM05D001880 ORTHO05D005098 9.7e-89 330.5 216 77.8
ATR0315G044 Amborella trichopoda HOM05D001880 ORTHO05D005098 1.3e-88 330.1 216 77.3
BcaC04g19219 Brassica carinata HOM05D001880 ORTHO05D005098 1.3e-88 330.1 216 76.9
BolC9t59360H Brassica oleracea HOM05D001880 ORTHO05D005098 1.3e-88 330.1 216 76.9
Cc08_g09010 Coffea canephora HOM05D001880 ORTHO05D005098 1.3e-88 330.1 216 77.8
Gohir.D08G272200 Gossypium hirsutum HOM05D001880 ORTHO05D005098 1.7e-88 329.7 216 77.3
Gorai.004G290600 Gossypium raimondii HOM05D001880 ORTHO05D005098 1.7e-88 329.7 216 77.3
Medtr3g110022 Medicago truncatula HOM05D001880 ORTHO05D005098 1.7e-88 329.7 216 77.8
Nitab4.5_0000052g0180 Nicotiana tabacum HOM05D001880 ORTHO05D005098 1.7e-88 329.7 214 77.6
Psat0s4721g0040 Pisum sativum HOM05D001880 ORTHO05D005098 1.7e-88 329.7 216 77.3
SMO134G0016 Selaginella moellendorffii HOM05D001880 ORTHO05D005098 1.7e-88 329.7 216 76.4
Duzib150G0439 Durio zibethinus HOM05D001880 ORTHO05D005098 2.2e-88 329.3 216 76.4
TWI32G1114 Tripterygium wilfordii HOM05D001880 ORTHO05D005098 2.2e-88 329.3 216 77.3
VMungo1309G0461 Vigna mungo HOM05D001880 ORTHO05D005098 2.2e-88 329.3 215 77.2
Migut.A00247 Erythranthe guttata HOM05D001880 ORTHO05D005098 3.7e-88 328.6 216 78.2
Glyma.04G080400 Glycine max HOM05D001880 ORTHO05D005098 3.7e-88 328.6 216 76.9
Hma1.2p1_0422F.1_g150140 Hydrangea macrophylla HOM05D001880 ORTHO05D005098 3.7e-88 328.6 216 76.4
Phvul.009G106500 Phaseolus vulgaris HOM05D001880 ORTHO05D005098 3.7e-88 328.6 216 76.4
MSTRG.25891 Avicennia marina HOM05D001880 ORTHO05D005098 4.8e-88 328.2 216 77.8
C02p05070 Brassica napus HOM05D001880 ORTHO05D005098 4.8e-88 328.2 216 76.9
CiPaw.08G023800 Carya illinoinensis HOM05D001880 ORTHO05D005098 4.8e-88 328.2 216 76.9
HanXRQChr07g0188141 Helianthus annuus HOM05D001880 ORTHO05D005098 6.3e-88 327.8 216 77.3
CANSAT25G1770 Cannabis sativa HOM05D001880 ORTHO05D005098 8.2e-88 327.4 216 76.4
Cfa013347 Carpinus fangiana HOM05D001880 ORTHO05D005098 1.1e-87 327.0 215 76.7
Nn2g11707 Nelumbo nucifera HOM05D001880 ORTHO05D005098 1.1e-87 327.0 216 76.4
Gohir.A08G250700 Gossypium hirsutum HOM05D001880 ORTHO05D005098 1.4e-87 326.6 216 76.9
Gohir.D05G049500 Gossypium hirsutum HOM05D001880 ORTHO05D005098 1.4e-87 326.6 216 76.4
Hma1.2p1_0140F.1_g063500 Hydrangea macrophylla HOM05D001880 ORTHO05D005098 1.4e-87 326.6 216 77.3
Lj1g0025868 Lotus japonicus HOM05D001880 ORTHO05D005098 1.4e-87 326.6 220 75.9
Manes.03G063100 Manihot esculenta HOM05D001880 ORTHO05D005098 1.4e-87 326.6 216 75.9
Glyma.06G082100 Glycine max HOM05D001880 ORTHO05D005098 1.8e-87 326.2 216 75.9
Zm00001eb350500 Zea mays HOM05D001880 ORTHO05D005098 1.8e-87 326.2 216 73.6
Pp3c9_4250 Physcomitrium patens HOM05D001880 ORTHO05D005098 2.4e-87 325.9 216 76.4
TAR626G0694 Trochodendron aralioides HOM05D001880 ORTHO05D005098 3.1e-87 325.5 216 75.5
Gohir.A07G023800 Gossypium hirsutum HOM05D001880 ORTHO05D005098 4.1e-87 325.1 216 76.9
PSO210G6462 Papaver somniferum HOM05D001880 ORTHO05D005098 4.1e-87 325.1 216 75.9
TAR383G0375 Trochodendron aralioides HOM05D001880 ORTHO05D005098 5.3e-87 324.7 216 76.4
Aqoxy7G01618 Aquilegia oxysepala HOM05D001880 ORTHO05D005098 7.0e-87 324.3 216 75.9
DCAR_004495 Daucus carota HOM05D001880 ORTHO05D005098 7.0e-87 324.3 216 77.8
Duzib187G1109 Durio zibethinus HOM05D001880 ORTHO05D005098 7.0e-87 324.3 216 75.9
Gorai.009G050800 Gossypium raimondii HOM05D001880 ORTHO05D005098 7.0e-87 324.3 216 75.9
HPP92_023949 Vanilla planifolia HOM05D001880 ORTHO05D005098 7.0e-87 324.3 216 76.4
MSTRG.1651 Avicennia marina HOM05D001880 ORTHO05D005098 9.1e-87 323.9 216 76.4
PSO210G1422 Papaver somniferum HOM05D001880 ORTHO05D005098 9.1e-87 323.9 216 75.5
Pp3c9_9290 Physcomitrium patens HOM05D001880 ORTHO05D005098 9.1e-87 323.9 216 75.9
Gohir.D07G027400 Gossypium hirsutum HOM05D001880 ORTHO05D005098 1.2e-86 323.6 216 76.4
MD08G1117900 Malus domestica HOM05D001880 ORTHO05D005098 1.2e-86 323.6 216 75.9
MD15G1097400 Malus domestica HOM05D001880 ORTHO05D005098 1.2e-86 323.6 216 75.9
Lalb_Chr11g0064351 Lupinus albus HOM05D001880 ORTHO05D005098 2.0e-86 322.8 216 74.5
Dinv14228 Davidia involucrata HOM05D001880 ORTHO05D005098 2.6e-86 322.4 215 74.4
Gohir.A05G048200 Gossypium hirsutum HOM05D001880 ORTHO05D005098 2.6e-86 322.4 216 75.0
PGR044G1166 Punica granatum HOM05D001880 ORTHO05D005098 2.6e-86 322.4 216 75.5
CiPaw.07G206800 Carya illinoinensis HOM05D001880 ORTHO05D005098 3.5e-86 322.0 215 74.9
COL.COLO4_18693 Corchorus olitorius HOM05D001880 ORTHO05D005098 3.5e-86 322.0 216 75.5
Gorai.001G028600 Gossypium raimondii HOM05D001880 ORTHO05D005098 4.5e-86 321.6 215 75.8
Lalb_Chr08g0243251 Lupinus albus HOM05D001880 ORTHO05D005098 5.9e-86 321.2 216 74.5
DCAR_000746 Daucus carota HOM05D001880 ORTHO05D005098 2.2e-85 319.3 216 75.9
TPR.G1376 Trifolium pratense HOM05D001880 ORTHO05D005098 2.2e-85 319.3 216 75.5
Aqoxy7G03843 Aquilegia oxysepala HOM05D001880 ORTHO05D005098 2.9e-85 318.9 216 74.1
SGA_v2.0_scaffold163G38091 Striga asiatica HOM05D001880 ORTHO05D005098 3.8e-85 318.5 221 74.7
SalBow8G4639 Salvia bowleyana HOM05D001880 ORTHO05D005098 6.5e-85 317.8 217 76.5
BcaNung01928 Brassica carinata HOM05D001880 ORTHO05D005098 1.9e-84 316.2 221 74.7
CDE05G1188 Ceratophyllum demersum HOM05D001880 ORTHO05D005098 5.5e-84 314.7 216 73.1
Prupe.1G452200 Prunus persica HOM05D001880 ORTHO05D005098 5.5e-84 314.7 227 73.1
Lalb_Chr23g0269461 Lupinus albus HOM05D001880 ORTHO05D005098 2.1e-83 312.8 216 72.2
Hund19544 Selenicereus undatus HOM05D001880 ORTHO05D005098 1.1e-79 300.4 221 70.6
Aa31LG3G15700 Aethionema arabicum HOM05D001758 ORTHO05D005969 3.1e-79 298.9 216 72.2
ECA246G2183 Erigeron canadensis HOM05D001880 ORTHO05D004730 5.3e-79 298.1 218 70.6
FvH4_2g36060 Fragaria vesca HOM05D001880 ORTHO05D005098 5.3e-79 298.1 216 70.4
RcHm_v2.0_Chr6g0305791 Rosa chinensis HOM05D001880 ORTHO05D005098 5.3e-79 298.1 216 70.4
GSVIVG01035667001 Vitis vinifera HOM05D001880 ORTHO05D005098 5.3e-79 298.1 199 77.4
BolC2t06461H Brassica oleracea HOM05D001880 ORTHO05D005098 2.7e-78 295.8 218 71.1
Os01g0750500 Oryza sativa ssp. japonica HOM05D001880 ORTHO05D005098 2.7e-78 295.8 216 69.4
SalBow4G0117 Salvia bowleyana HOM05D001880 ORTHO05D005098 5.9e-78 294.7 216 71.8
Rhsim03G0046500 Rhododendron simsii HOM05D001880 ORTHO05D005098 1.0e-77 293.9 216 70.8
Lj8C597T7 Lonicera japonica HOM05D001880 ORTHO05D005098 1.1e-76 290.4 216 70.8
SGA_v2.0_scaffold169G38642 Striga asiatica HOM05D001880 ORTHO05D005098 2.5e-76 289.3 216 69.9
QL12p026578 Quercus lobata HOM05D001880 ORTHO05D005098 8.0e-75 284.3 164 81.7
Oeu014654.1 Olea europaea HOM05D001880 ORTHO05D005098 1.8e-74 283.1 216 68.5
Dinv30256 Davidia involucrata HOM05D001880 ORTHO05D005098 2.3e-74 282.7 164 83.5
Ca_15617_v3 Cicer arietinum L. HOM05D001880 ORTHO05D005098 8.8e-74 280.8 164 82.3
AUR62009327 Chenopodium quinoa HOM05D001880 ORTHO05D005098 2.2e-72 276.2 216 67.1
Lsat_1_v5_gn_5_34021 Lactuca sativa HOM05D001880 ORTHO05D005098 8.3e-72 274.2 215 67.4
Sc09g0009110 Simmondsia chinensis HOM05D001880 ORTHO05D005098 4.1e-71 271.9 276 55.4
Zm00001eb153360 Zea mays HOM05D001880 ORTHO05D005098 9.1e-71 270.8 217 67.3
FAN27G1491 Fragaria x ananassa HOM05D001880 ORTHO05D005098 1.1e-68 263.8 216 64.4
EL10Ac2g04067 Beta vulgaris HOM05D001880 ORTHO05D005098 4.2e-68 261.9 216 64.8
FAN15G2674 Fragaria x ananassa HOM05D001880 ORTHO05D005098 4.2e-68 261.9 216 63.9
Oeu016233.2 Olea europaea HOM05D001880 ORTHO05D005098 2.7e-67 259.2 216 63.0
AagrBONN_evm.TU.Sc2ySwM_228.2603 Anthoceros agrestis HOM05D001880 ORTHO05D005098 3.0e-66 255.8 144 81.9
Gorai.011G152300 Gossypium raimondii HOM05D001880 ORTHO05D005098 1.2e-65 253.8 216 62.0
PSO832G1756 Papaver somniferum HOM05D001880 ORTHO05D005098 2.8e-64 249.2 217 60.8
Sabra18G0038400 Salix brachista HOM05D001880 ORTHO05D005098 1.6e-62 243.4 164 73.8
MCO11G833 Micromonas commoda HOM05D001880 ORTHO05D005098 5.9e-62 241.5 219 60.3
AUR62023014 Chenopodium quinoa HOM05D000682 ORTHO05D000510 2.3e-61 239.6 196 67.3
Haze_21860 Corylus avellana HOM05D001880 ORTHO05D005098 5.6e-60 235.0 164 70.7
PRCOL_00004463 Prasinoderma coloniale HOM05D001880 ORTHO05D005098 7.3e-60 234.6 211 59.2
Ah.10g035220 Amaranthus hybridus HOM05D001880 ORTHO05D005098 9.5e-60 234.2 217 60.8
Lj8C602T7 Lonicera japonica HOM05D001880 ORTHO05D005098 6.1e-59 231.5 216 60.6
Rhsim03G0044500 Rhododendron simsii HOM05D001880 ORTHO05D005098 5.4e-55 218.4 178 67.4
Cre06.g275300 Chlamydomonas reinhardtii HOM05D001880 ORTHO05D005098 2.0e-49 199.9 220 51.4
Cc00_g02820 Coffea canephora HOM05D001880 ORTHO05D005098 3.9e-45 185.7 108 78.7
Cc03_g15000 Coffea canephora HOM05D001880 ORTHO05D005098 3.9e-45 185.7 108 78.7
Cfa026630 Carpinus fangiana HOM05D004477 ORTHO05D005615 1.9e-44 183.3 204 51.0
Pp3c9_8200 Physcomitrium patens HOM05D001880 ORTHO05D005098 2.4e-39 166.4 106 77.4
CSS0023199 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 2.3e-37 159.8 248 44.4
MBI04_g19163_MAGBIO Magnolia biondii HOM05D001880 ORTHO05D005098 8.6e-37 157.9 136 65.4
HPP92_023929 Vanilla planifolia HOM05D001880 ORTHO05D005098 8.1e-35 151.4 84 81.0
Lj7A706G42 Lonicera japonica HOM05D001880 ORTHO05D001339 1.4e-34 150.6 117 62.4
HPP92_023928 Vanilla planifolia HOM05D001880 ORTHO05D005098 1.8e-34 150.2 135 63.7
Sabra06G0189300 Salix brachista HOM05D001880 ORTHO05D005098 1.3e-32 144.1 81 81.5
Os05g0221400 Oryza sativa ssp. japonica HOM05D001880 ORTHO05D005098 7.1e-31 138.3 81 80.2
Lj7A706T45 Lonicera japonica HOM05D001880 ORTHO05D005098 2.5e-28 129.8 114 65.8
Zm00001eb036010 Zea mays HOM05D001880 ORTHO05D005098 5.2e-26 122.1 101 66.3
Zm00001eb052320 Zea mays HOM05D001880 ORTHO05D005098 5.2e-26 122.1 101 66.3
Zm00001eb071380 Zea mays HOM05D001880 ORTHO05D005098 5.2e-26 122.1 101 66.3
Zm00001eb291550 Zea mays HOM05D001880 ORTHO05D005098 5.2e-26 122.1 101 66.3
Zm00001eb391830 Zea mays HOM05D001880 ORTHO05D005098 5.2e-26 122.1 101 66.3
Cc00_g34580 Coffea canephora HOM05D001880 ORTHO05D005098 4.4e-25 119.0 71 73.2
CSS0036439 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 4.9e-16 89.0 62 72.6
Gorai.011G178000 Gossypium raimondii HOM05D001880 ORTHO05D005098 6.2e-11 72.0 74 60.8
SalBow5G0200 Salvia bowleyana HOM05D001880 ORTHO05D355852 3.4e-09 66.2 71 46.5
SalBow8G1849 Salvia bowleyana HOM05D001880 ORTHO05D363534 3.4e-09 66.2 71 46.5
SalBow8G2043 Salvia bowleyana HOM05D001880 ORTHO05D356500 3.4e-09 66.2 71 46.5
Gorai.011G118500 Gossypium raimondii HOM05D001880 ORTHO05D013650 7.6e-09 65.1 39 66.7
SalBow6G5594 Salvia bowleyana HOM05D001880 ORTHO05D357349 1.3e-08 64.3 71 45.1
Gorai.002G175500 Gossypium raimondii HOM05D001035 ORTHO05D013650 2.9e-08 63.2 39 64.1
Gorai.012G085200 Gossypium raimondii HOM05D001880 ORTHO05D005098 3.8e-08 62.8 68 57.4


User provided reference genes

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