Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g40794 Chara braunii HOM05D004637 ORTHO05D005320 1.4e-117 426.4 235 100.0
CBR_g8228 Chara braunii HOM05D004637 ORTHO05D005320 1.6e-105 386.3 223 88.8
MSTRG.25070 Avicennia marina HOM05D004637 ORTHO05D005320 6.3e-65 251.5 219 58.4
CSS0035210 Camellia sinensis var. sinensis HOM05D004637 ORTHO05D005320 6.3e-65 251.5 221 59.3
Migut.N02728 Erythranthe guttata HOM05D004637 ORTHO05D005320 6.3e-65 251.5 219 59.8
Eucgr.F00183 Eucalyptus grandis HOM05D004637 ORTHO05D005320 6.3e-65 251.5 221 58.8
QL02p003978 Quercus lobata HOM05D004637 ORTHO05D005320 8.2e-65 251.1 221 57.5
SEGI_04928 Sequoiadendron giganteum HOM05D004637 ORTHO05D005320 8.2e-65 251.1 220 58.6
Nn5g30394 Nelumbo nucifera HOM05D004637 ORTHO05D005320 1.1e-64 250.8 217 59.4
Dinv35927 Davidia involucrata HOM05D004637 ORTHO05D005320 4.1e-64 248.8 219 58.9
Atru.chr13.748 Acer truncatum HOM05D004637 ORTHO05D005320 1.2e-63 247.3 221 57.5
GSVIVG01009436001 Vitis vinifera HOM05D004637 ORTHO05D005320 1.2e-63 247.3 221 57.5
Actinidia08272 Actinidia chinensis HOM05D004637 ORTHO05D005320 1.5e-63 246.9 219 58.0
CANSAT54G2334 Cannabis sativa HOM05D004637 ORTHO05D005320 1.5e-63 246.9 221 57.0
HanXRQChr10g0309661 Helianthus annuus HOM05D004637 ORTHO05D005320 2.0e-63 246.5 219 58.0
Hma1.2p1_0360F.1_g135900 Hydrangea macrophylla HOM05D004637 ORTHO05D005320 2.0e-63 246.5 219 58.4
Thecc.08G001300 Theobroma cacao HOM05D004637 ORTHO05D005320 2.6e-63 246.1 221 56.1
THA.LOC104824981 Tarenaya hassleriana HOM05D004637 ORTHO05D005320 3.4e-63 245.7 219 56.2
Dinv39271 Davidia involucrata HOM05D004637 ORTHO05D005320 5.9e-63 245.0 219 57.5
Glyma.14G085900 Glycine max HOM05D004637 ORTHO05D005320 7.7e-63 244.6 221 56.1
Glyma.17G238800 Glycine max HOM05D004637 ORTHO05D005320 1.0e-62 244.2 221 56.6
Potri.014G023800 Populus trichocarpa HOM05D004637 ORTHO05D005320 1.0e-62 244.2 221 56.6
TAR381G1093 Trochodendron aralioides HOM05D004637 ORTHO05D005320 1.0e-62 244.2 219 57.1
PGSC0003DMG400015434 Solanum tuberosum HOM05D004637 ORTHO05D005320 1.3e-62 243.8 219 57.1
CiPaw.15G052200 Carya illinoinensis HOM05D004637 ORTHO05D005320 1.7e-62 243.4 219 57.5
Sed0017846 Sechium edule HOM05D004637 ORTHO05D005320 2.2e-62 243.0 219 56.2
Os07g0479200 Oryza sativa ssp. japonica HOM05D004637 ORTHO05D005320 2.9e-62 242.7 219 56.6
Sopen12g030560 Solanum pennellii HOM05D004637 ORTHO05D005320 2.9e-62 242.7 219 56.2
PSO170G3952 Papaver somniferum HOM05D004637 ORTHO05D005320 3.8e-62 242.3 219 57.1
SMO365G0080 Selaginella moellendorffii HOM05D004637 ORTHO05D005320 5.0e-62 241.9 219 56.2
Solyc12g088660.2 Solanum lycopersicum HOM05D004637 ORTHO05D005320 5.0e-62 241.9 219 56.2
Lsat_1_v5_gn_1_22460 Lactuca sativa HOM05D004637 ORTHO05D005320 8.5e-62 241.1 221 56.6
Manes.05G177100 Manihot esculenta HOM05D004637 ORTHO05D005320 8.5e-62 241.1 221 54.3
Medtr1g018800 Medicago truncatula HOM05D004637 ORTHO05D005320 1.1e-61 240.7 221 56.6
TWI36G0292 Tripterygium wilfordii HOM05D004637 ORTHO05D005320 1.1e-61 240.7 221 54.3
Cc10_g04860 Coffea canephora HOM05D004637 ORTHO05D005320 1.4e-61 240.4 221 55.7
MELO3C010837.2 Cucumis melo HOM05D004637 ORTHO05D005320 1.4e-61 240.4 219 56.2
CsaV3_2G026470 Cucumis sativus L. HOM05D004637 ORTHO05D005320 1.4e-61 240.4 219 56.2
PSO210G5934 Papaver somniferum HOM05D004637 ORTHO05D005320 1.4e-61 240.4 219 56.2
MD15G1077400 Malus domestica HOM05D004637 ORTHO05D005320 1.9e-61 240.0 221 56.1
Prupe.1G430800 Prunus persica HOM05D004637 ORTHO05D005320 1.9e-61 240.0 219 55.7
Lj5g0011390 Lotus japonicus HOM05D004637 ORTHO05D005320 3.2e-61 239.2 219 56.2
Aa31LG8G3140 Aethionema arabicum HOM05D004637 ORTHO05D005320 4.2e-61 238.8 220 54.5
CDE01G0812 Ceratophyllum demersum HOM05D004637 ORTHO05D005320 4.2e-61 238.8 214 57.5
FvH4_2g33730 Fragaria vesca HOM05D004637 ORTHO05D005320 4.2e-61 238.8 219 56.6
Mapoly0040s0013 Marchantia polymorpha HOM05D004637 ORTHO05D005320 4.2e-61 238.8 221 55.2
Carub.0006s2649 Capsella rubella HOM05D004637 ORTHO05D005320 7.2e-61 238.0 219 54.3
MD08G1093700 Malus domestica HOM05D004637 ORTHO05D005320 1.2e-60 237.3 219 55.7
Pp3c3_8350 Physcomitrium patens HOM05D004637 ORTHO05D005320 1.2e-60 237.3 218 56.9
AT4G07390 Arabidopsis thaliana HOM05D004637 ORTHO05D005320 1.6e-60 236.9 219 54.3
PGR031G3707 Punica granatum HOM05D004637 ORTHO05D005320 1.6e-60 236.9 222 55.0
AL6G41290 Arabidopsis lyrata HOM05D004637 ORTHO05D005320 2.1e-60 236.5 219 53.9
CAN.G1194.20 Capsicum annuum HOM05D004637 ORTHO05D005320 2.7e-60 236.1 219 55.3
AL8G35940 Arabidopsis lyrata HOM05D004637 ORTHO05D005320 3.6e-60 235.7 217 55.8
Gohir.D05G208900 Gossypium hirsutum HOM05D004637 ORTHO05D005320 3.6e-60 235.7 221 56.1
Phvul.001G024600 Phaseolus vulgaris HOM05D004637 ORTHO05D005320 3.6e-60 235.7 221 55.2
THA.LOC104825764 Tarenaya hassleriana HOM05D004637 ORTHO05D005320 3.6e-60 235.7 219 53.9
TPR.G3787 Trifolium pratense HOM05D004637 ORTHO05D005320 3.6e-60 235.7 221 54.8
Gohir.A05G205600 Gossypium hirsutum HOM05D004637 ORTHO05D005320 4.6e-60 235.3 221 55.7
Pp3c4_22670 Physcomitrium patens HOM05D004637 ORTHO05D005320 6.1e-60 235.0 218 55.5
Sp6g10610 Schrenkiella parvula HOM05D004637 ORTHO05D005320 6.1e-60 235.0 220 53.2
BraA03t12001Z Brassica rapa HOM05D004637 ORTHO05D005320 1.0e-59 234.2 220 53.2
Eucgr.F02306 Eucalyptus grandis HOM05D004637 ORTHO05D005320 1.0e-59 234.2 219 55.3
Gorai.009G215300 Gossypium raimondii HOM05D004637 ORTHO05D005320 2.3e-59 233.0 222 56.3
BcaB01g02883 Brassica carinata HOM05D004637 ORTHO05D005320 3.0e-59 232.6 220 52.7
A03p27890 Brassica napus HOM05D004637 ORTHO05D005320 3.0e-59 232.6 220 53.2
C03p33670 Brassica napus HOM05D004637 ORTHO05D005320 3.9e-59 232.3 220 52.7
BolC3t15687H Brassica oleracea HOM05D004637 ORTHO05D005320 3.9e-59 232.3 220 52.7
HPP92_003482 Vanilla planifolia HOM05D004637 ORTHO05D005320 3.9e-59 232.3 220 54.5
CARHR288440 Cardamine hirsuta HOM05D004637 ORTHO05D005320 1.5e-58 230.3 219 52.1
unitig_26.g9809 Utricularia gibba HOM05D004637 ORTHO05D005320 1.5e-58 230.3 219 54.8
Ah.08g212480 Amaranthus hybridus HOM05D004637 ORTHO05D005320 2.0e-58 229.9 245 50.6
TWI56G1297 Tripterygium wilfordii HOM05D004637 ORTHO05D005320 4.3e-58 228.8 221 52.9
ClCG08G016150 Citrullus lanatus HOM05D004637 ORTHO05D005320 7.4e-58 228.0 219 55.7
Thhalv10028929m.g Eutrema salsugineum HOM05D004637 ORTHO05D005320 9.7e-58 227.6 219 52.5
Carub.0008s2014 Capsella rubella HOM05D004637 ORTHO05D005320 1.3e-57 227.3 217 53.9
Actinidia38079 Actinidia chinensis HOM05D004637 ORTHO05D005320 2.2e-57 226.5 198 58.6
Aqoxy5G01163 Aquilegia oxysepala HOM05D004637 ORTHO05D005320 2.2e-57 226.5 198 59.6
CiPaw.16G038000 Carya illinoinensis HOM05D004637 ORTHO05D005320 8.2e-57 224.6 221 52.0
Thhalv10015267m.g Eutrema salsugineum HOM05D004637 ORTHO05D005320 8.2e-57 224.6 222 50.0
CARHR285840 Cardamine hirsuta HOM05D004637 ORTHO05D005320 1.1e-56 224.2 217 52.5
BcaC01g04795 Brassica carinata HOM05D004637 ORTHO05D005320 1.4e-56 223.8 221 51.6
Nitab4.5_0006004g0010 Nicotiana tabacum HOM05D004637 ORTHO05D005320 1.4e-56 223.8 219 52.5
RcHm_v2.0_Chr6g0308821 Rosa chinensis HOM05D004637 ORTHO05D005320 1.8e-56 223.4 226 54.9
Sabra14G0016200 Salix brachista HOM05D004637 ORTHO05D005320 4.1e-56 222.2 267 47.6
Ciclev10002344m.g Citrus clementina HOM05D004637 ORTHO05D005320 5.3e-56 221.9 218 51.8
Lj4A64T29 Lonicera japonica HOM05D004637 ORTHO05D005320 5.3e-56 221.9 203 57.1
Psat6g015000 Pisum sativum HOM05D004637 ORTHO05D005320 6.9e-56 221.5 200 55.5
TAR628G0069 Trochodendron aralioides HOM05D004637 ORTHO05D005320 6.9e-56 221.5 198 57.6
TAR628G0193 Trochodendron aralioides HOM05D004637 ORTHO05D005320 1.2e-55 220.7 198 57.6
ECA247G2514 Erigeron canadensis HOM05D004637 ORTHO05D005320 1.5e-55 220.3 193 57.5
Zm00001eb104960 Zea mays HOM05D004637 ORTHO05D005320 2.0e-55 219.9 200 56.5
Rhsim07G0225500 Rhododendron simsii HOM05D004637 ORTHO05D005320 3.4e-55 219.2 246 51.2
VMungo0647G2267 Vigna mungo HOM05D004637 ORTHO05D005320 4.5e-55 218.8 197 57.9
EL10As7g23788 Beta vulgaris HOM05D004637 ORTHO05D005320 7.7e-55 218.0 257 47.5
Oeu045704.1 Olea europaea HOM05D004637 ORTHO05D005320 7.7e-55 218.0 195 56.4
BcaB05g22509 Brassica carinata HOM05D004637 ORTHO05D005320 2.2e-54 216.5 219 50.7
C02p12470 Brassica napus HOM05D004637 ORTHO05D005320 3.2e-53 212.6 217 50.2
RcHm_v2.0_Chr0c32g0501551 Rosa chinensis HOM05D004637 ORTHO05D005320 7.2e-53 211.5 220 52.7
BcaC03g14011 Brassica carinata HOM05D004637 ORTHO05D005320 9.4e-53 211.1 217 49.8
BolC2t07347H Brassica oleracea HOM05D004637 ORTHO05D005320 9.4e-53 211.1 217 49.8
BraA02t05792Z Brassica rapa HOM05D004637 ORTHO05D005320 9.4e-53 211.1 217 49.3
A02p07110 Brassica napus HOM05D004637 ORTHO05D005320 1.2e-52 210.7 217 49.3
BolC3t13818H Brassica oleracea HOM05D004637 ORTHO05D005320 2.7e-52 209.5 217 50.2
Duzib093G0653 Durio zibethinus HOM05D004637 ORTHO05D005320 4.7e-52 208.8 221 52.5
Cfa018057 Carpinus fangiana HOM05D004637 ORTHO05D005320 6.1e-52 208.4 204 55.9
arahy.Tifrunner.gnm1.ann1.RG91LC Arachis hypogaea HOM05D004637 ORTHO05D005320 6.7e-51 204.9 219 51.1
arahy.Tifrunner.gnm1.ann1.UI0UDP Arachis hypogaea HOM05D004637 ORTHO05D005320 6.7e-51 204.9 219 51.1
Peaxi162Scf01087g00125 Petunia axillaris HOM05D004637 ORTHO05D005320 1.1e-50 204.1 183 56.3
PGR083G2827 Punica granatum HOM05D004637 ORTHO05D005320 4.4e-50 202.2 190 56.3
FAN15G1438 Fragaria x ananassa HOM05D004637 ORTHO05D005320 7.4e-50 201.4 215 52.1
FAN27G2280 Fragaria x ananassa HOM05D004637 ORTHO05D005320 1.7e-49 200.3 222 50.5
HPP92_026880 Vanilla planifolia HOM05D004637 ORTHO05D005320 3.7e-49 199.1 177 56.5
Sc02g0007520 Simmondsia chinensis HOM05D004637 ORTHO05D005320 1.4e-48 197.2 181 55.2
Nitab4.5_0004339g0040 Nicotiana tabacum HOM05D004637 ORTHO05D005320 3.1e-48 196.1 191 55.0
Nitab4.5_0006486g0040 Nicotiana tabacum HOM05D004637 ORTHO05D005320 9.4e-45 184.5 223 47.5
AagrBONN_evm.TU.Sc2ySwM_344.2883 Anthoceros agrestis HOM05D004637 ORTHO05D005320 4.0e-43 179.1 165 56.4
Manes.18G041200 Manihot esculenta HOM05D004637 ORTHO05D005320 1.7e-41 173.7 161 54.7
Nitab4.5_0010118g0060 Nicotiana tabacum HOM05D004637 ORTHO05D005320 1.4e-40 170.6 214 47.2
Oeu037612.1 Olea europaea HOM05D004637 ORTHO05D005320 1.8e-40 170.2 160 56.2
Haze_18072 Corylus avellana HOM05D004637 ORTHO05D005320 3.8e-38 162.5 161 54.7
FAN20G0860 Fragaria x ananassa HOM05D004637 ORTHO05D005320 3.2e-37 159.5 227 42.7
FAN24G1748 Fragaria x ananassa HOM05D004637 ORTHO05D005320 2.3e-35 153.3 198 47.0
vmacro21608 Vaccinium macrocarpon HOM05D004637 ORTHO05D005320 2.0e-34 150.2 145 57.2
Peaxi162Scf00160g00034 Petunia axillaris HOM05D004637 ORTHO05D005320 1.6e-31 140.6 141 53.2
Cre17.g722500 Chlamydomonas reinhardtii HOM05D004637 ORTHO05D005320 1.8e-27 127.1 196 37.2
SalBow7G4009 Salvia bowleyana HOM05D004637 ORTHO05D005320 2.3e-27 126.7 124 55.6
AT5G59470 Arabidopsis thaliana HOM05D004637 ORTHO05D005320 5.2e-27 125.6 129 54.3
PRCOL_00005305 Prasinoderma coloniale HOM05D004637 ORTHO05D005320 2.6e-26 123.2 203 36.5
Sp6g21160 Schrenkiella parvula HOM05D004637 ORTHO05D005320 9.8e-26 121.3 129 53.5
AUR62002897 Chenopodium quinoa HOM05D004637 ORTHO05D005320 2.8e-25 119.8 222 36.5
Lalb_Chr22g0354931 Lupinus albus HOM05D004637 ORTHO05D005320 1.4e-24 117.5 111 53.2
QL07p047618 Quercus lobata HOM05D004637 ORTHO05D005320 2.3e-22 110.2 101 55.4
BcaB01g04583 Brassica carinata HOM05D004637 ORTHO05D005320 8.6e-22 108.2 130 43.1
AUR62035253 Chenopodium quinoa HOM05D004637 ORTHO05D005320 8.6e-22 108.2 124 52.4
SGA_v2.0_scaffold137G35065 Striga asiatica HOM05D004637 ORTHO05D005320 1.9e-21 107.1 76 60.5
Cpa.g.sc21.155 Carica papaya HOM05D004637 ORTHO05D005320 4.3e-21 105.9 94 59.6
Hund04212 Selenicereus undatus HOM05D004637 ORTHO05D005320 2.1e-20 103.6 132 43.2
BcaC01g04787 Brassica carinata HOM05D004637 ORTHO05D005320 2.8e-20 103.2 94 55.3
SGA_v2.0_scaffold588G53062 Striga asiatica HOM05D004637 ORTHO05D005320 8.0e-20 101.7 256 32.8
MCO13G491 Micromonas commoda HOM05D004637 ORTHO05D005320 3.4e-18 96.3 209 34.0
MCO13G508 Micromonas commoda HOM05D004637 ORTHO05D005320 3.4e-18 96.3 209 34.0
Cre06.g261300 Chlamydomonas reinhardtii HOM05D004637 ORTHO05D005320 7.5e-18 95.1 201 33.8
Lalb_Chr22g0354941 Lupinus albus HOM05D004637 ORTHO05D005320 1.7e-17 94.0 94 55.3
QL11p041834 Quercus lobata HOM05D001716 ORTHO05D004234 2.9e-17 93.2 99 50.5
Pp3c10_370 Physcomitrium patens HOM05D004637 ORTHO05D005320 3.9e-14 82.8 74 51.4
Peaxi162Scf00160g00024 Petunia axillaris HOM05D004637 ORTHO05D005320 2.3e-11 73.6 57 57.9
RcHm_v2.0_Chr1g0356881 Rosa chinensis HOM05D004637 ORTHO05D005320 1.7e-09 67.4 51 70.6
Cc02_g27600 Coffea canephora HOM05D004637 ORTHO05D005320 1.9e-08 63.9 72 45.8
Ca_13257_v3 Cicer arietinum L. HOM05D004637 ORTHO05D005320 2.0e-07 60.5 51 47.1
BcaB02g11171 Brassica carinata HOM05D037786 ORTHO05D091371 2.7e-07 60.1 48 50.0


User provided reference genes

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