Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g4074 Chara braunii HOM05D004273 ORTHO05D005041 0.0e+00 1961.4 1097 100.0
AagrBONN_evm.TU.Sc2ySwM_117.239 Anthoceros agrestis HOM05D004273 ORTHO05D005041 1.3e-48 199.5 373 34.0
SEGI_06894 Sequoiadendron giganteum HOM05D004273 ORTHO05D005041 1.7e-48 199.1 391 31.5
COL.COLO4_18478 Corchorus olitorius HOM05D004273 ORTHO05D005041 3.6e-46 191.4 348 33.9
Phvul.011G065600 Phaseolus vulgaris HOM05D004273 ORTHO05D005041 8.0e-46 190.3 340 33.2
HPP92_019085 Vanilla planifolia HOM05D004273 ORTHO05D005041 1.4e-45 189.5 405 32.3
TAR633G2082 Trochodendron aralioides HOM05D004273 ORTHO05D005041 2.3e-45 188.7 367 32.7
Actinidia02958 Actinidia chinensis HOM05D004273 ORTHO05D005041 5.2e-45 187.6 397 30.7
VMungo1127G1030 Vigna mungo HOM05D004273 ORTHO05D005041 1.2e-44 186.4 341 33.7
Ca_19181_v3 Cicer arietinum L. HOM05D004273 ORTHO05D005041 2.0e-44 185.7 352 31.2
Lj3g0025927 Lotus japonicus HOM05D004273 ORTHO05D005041 2.0e-44 185.7 356 31.2
AL5G25280 Arabidopsis lyrata HOM05D004273 ORTHO05D005041 2.6e-44 185.3 386 30.6
Lj1A156G61 Lonicera japonica HOM05D004273 ORTHO05D005041 2.6e-44 185.3 367 31.9
Prupe.6G080900 Prunus persica HOM05D004273 ORTHO05D005041 2.6e-44 185.3 407 31.4
Gohir.A03G040200 Gossypium hirsutum HOM05D004273 ORTHO05D005041 3.4e-44 184.9 347 31.4
Glyma.11G141100 Glycine max HOM05D004273 ORTHO05D005041 5.7e-44 184.1 350 31.7
Manes.04G033100 Manihot esculenta HOM05D004273 ORTHO05D005041 5.7e-44 184.1 366 32.8
PGR102G1220 Punica granatum HOM05D004273 ORTHO05D005041 5.7e-44 184.1 345 32.8
Sp5g15230 Schrenkiella parvula HOM05D004273 ORTHO05D005041 5.7e-44 184.1 386 30.6
CAN.G394.46 Capsicum annuum HOM05D004273 ORTHO05D005041 7.5e-44 183.7 396 31.1
BraA06t25640Z Brassica rapa HOM05D004273 ORTHO05D005041 9.8e-44 183.3 363 30.3
Gorai.003G134500 Gossypium raimondii HOM05D004273 ORTHO05D005041 9.8e-44 183.3 347 31.1
Medtr4g063605 Medicago truncatula HOM05D004273 ORTHO05D005041 1.3e-43 183.0 340 32.9
PSO339G3737 Papaver somniferum HOM05D004273 ORTHO05D005041 1.3e-43 183.0 341 33.1
Hma1.2p1_0624F.1_g191440 Hydrangea macrophylla HOM05D004273 ORTHO05D005041 1.7e-43 182.6 366 31.7
Potri.001G237400 Populus trichocarpa HOM05D004273 ORTHO05D005041 1.7e-43 182.6 386 30.6
Potri.009G028700 Populus trichocarpa HOM05D004273 ORTHO05D005041 1.7e-43 182.6 366 32.5
Thecc.09G325000 Theobroma cacao HOM05D004273 ORTHO05D005041 1.7e-43 182.6 360 32.2
TPR.G10209 Trifolium pratense HOM05D004273 ORTHO05D005041 1.7e-43 182.6 356 31.7
Sabra09G0019900 Salix brachista HOM05D004273 ORTHO05D005041 2.8e-43 181.8 382 30.4
Thhalv10002507m.g Eutrema salsugineum HOM05D004273 ORTHO05D005041 3.7e-43 181.4 387 28.7
Os03g0820900 Oryza sativa ssp. japonica HOM05D004273 ORTHO05D005041 3.7e-43 181.4 371 31.0
TAR636G0691 Trochodendron aralioides HOM05D004273 ORTHO05D005041 3.7e-43 181.4 377 31.6
MD03G1096600 Malus domestica HOM05D004273 ORTHO05D005041 4.9e-43 181.0 365 32.1
FAN21G1625 Fragaria x ananassa HOM05D004273 ORTHO05D005041 6.3e-43 180.6 419 29.6
RcHm_v2.0_Chr5g0063781 Rosa chinensis HOM05D004273 ORTHO05D005041 6.3e-43 180.6 364 32.1
Zm00001eb062630 Zea mays HOM05D004273 ORTHO05D005041 6.3e-43 180.6 355 31.8
CDE04G0924 Ceratophyllum demersum HOM05D004273 ORTHO05D005041 8.3e-43 180.3 367 30.8
Lsat_1_v5_gn_8_77981 Lactuca sativa HOM05D000739 ORTHO05D005041 8.3e-43 180.3 357 33.1
Peaxi162Scf00015g00152 Petunia axillaris HOM05D004273 ORTHO05D005041 1.1e-42 179.9 368 31.5
EL10Ac7g15984 Beta vulgaris HOM05D004273 ORTHO05D005041 1.4e-42 179.5 364 31.9
PSO384G1393 Papaver somniferum HOM05D004273 ORTHO05D005041 1.8e-42 179.1 343 33.2
Sopen05g033050 Solanum pennellii HOM05D004273 ORTHO05D005041 1.8e-42 179.1 368 29.9
BcaB02g10723 Brassica carinata HOM05D004273 ORTHO05D005041 2.4e-42 178.7 364 29.9
BolC3t19006H Brassica oleracea HOM05D004273 ORTHO05D005041 2.4e-42 178.7 360 29.7
CARHR155380 Cardamine hirsuta HOM05D004273 ORTHO05D005041 2.4e-42 178.7 362 30.4
Oeu017093.1 Olea europaea HOM05D004273 ORTHO05D005041 2.4e-42 178.7 351 32.5
Sc06g0002640 Simmondsia chinensis HOM05D004273 ORTHO05D005041 2.4e-42 178.7 376 32.2
arahy.Tifrunner.gnm1.ann1.N7EFUM Arachis hypogaea HOM05D004273 ORTHO05D005041 3.1e-42 178.3 355 30.4
arahy.Tifrunner.gnm1.ann1.T00HES Arachis hypogaea HOM05D004273 ORTHO05D005041 3.1e-42 178.3 355 30.4
BcaC01g02262 Brassica carinata HOM05D004273 ORTHO05D005041 3.1e-42 178.3 360 29.7
Cpa.g.sc190.7 Carica papaya HOM05D004273 ORTHO05D005041 3.1e-42 178.3 350 32.6
AUR62038361 Chenopodium quinoa HOM05D004273 ORTHO05D005041 3.1e-42 178.3 352 30.7
ClCG02G020320 Citrullus lanatus HOM05D004273 ORTHO05D005041 3.1e-42 178.3 374 30.5
Migut.E01325 Erythranthe guttata HOM05D004273 ORTHO05D005041 3.1e-42 178.3 405 31.9
FvH4_3g35600 Fragaria vesca HOM05D004273 ORTHO05D005041 3.1e-42 178.3 398 29.6
Atru.chr3.3842_Atru.chr3.3843 Acer truncatum HOM05D004273 ORTHO05D005041 4.1e-42 177.9 360 30.6
AT3G46450 Arabidopsis thaliana HOM05D004273 ORTHO05D005041 4.1e-42 177.9 395 30.1
A06p27020 Brassica napus HOM05D004273 ORTHO05D005041 4.1e-42 177.9 351 30.8
HanXRQChr02g0044491 Helianthus annuus HOM05D004273 ORTHO05D005041 4.1e-42 177.9 356 33.1
Lalb_Chr24g0394211 Lupinus albus HOM05D004273 ORTHO05D005041 4.1e-42 177.9 345 32.2
PGSC0003DMG400030404 Solanum tuberosum HOM05D004273 ORTHO05D005041 5.4e-42 177.6 354 31.4
Gohir.D03G127800 Gossypium hirsutum HOM05D004273 ORTHO05D005041 7.0e-42 177.2 347 30.5
SalBow8G5260 Salvia bowleyana HOM05D004273 ORTHO05D005041 7.0e-42 177.2 359 33.1
MBI05_g06541_MAGBIO Magnolia biondii HOM05D004273 ORTHO05D005041 9.2e-42 176.8 352 30.4
TWI79G1222 Tripterygium wilfordii HOM05D004273 ORTHO05D005041 9.2e-42 176.8 381 29.1
Sabra16G0143100 Salix brachista HOM05D004273 ORTHO05D005041 1.2e-41 176.4 386 30.1
Solyc05g054570.3 Solanum lycopersicum HOM05D004273 ORTHO05D005041 1.2e-41 176.4 368 29.6
Eucgr.B02383 Eucalyptus grandis HOM05D004273 ORTHO05D005041 1.6e-41 176.0 362 30.9
Solyc06g075980.3 Solanum lycopersicum HOM05D004273 ORTHO05D005041 1.6e-41 176.0 379 31.1
Sopen06g032400 Solanum pennellii HOM05D004273 ORTHO05D005041 1.6e-41 176.0 378 31.2
PGSC0003DMG400023525 Solanum tuberosum HOM05D004273 ORTHO05D005041 1.6e-41 176.0 370 30.3
Carub.0005s1225 Capsella rubella HOM05D004273 ORTHO05D005041 2.0e-41 175.6 366 32.0
C03p67250 Brassica napus HOM05D004273 ORTHO05D005041 2.7e-41 175.3 360 29.4
SMO266G0022 Selaginella moellendorffii HOM05D004273 ORTHO05D005041 2.7e-41 175.3 342 31.9
Duzib170G0539 Durio zibethinus HOM05D004273 ORTHO05D005041 3.5e-41 174.9 348 31.0
Lalb_Chr03g0026761 Lupinus albus HOM05D004273 ORTHO05D005041 3.5e-41 174.9 367 30.2
THA.LOC104799449 Tarenaya hassleriana HOM05D004273 ORTHO05D005041 3.5e-41 174.9 342 30.7
ATR0559G270 Amborella trichopoda HOM05D004273 ORTHO05D005041 4.5e-41 174.5 353 30.3
arahy.Tifrunner.gnm1.ann1.0ME452 Arachis hypogaea HOM05D004273 ORTHO05D005041 4.5e-41 174.5 387 29.5
ECA236G0424 Erigeron canadensis HOM05D004273 ORTHO05D005041 4.5e-41 174.5 354 34.7
Sed0008303 Sechium edule HOM05D004273 ORTHO05D005041 4.5e-41 174.5 366 30.6
Dinv31442 Davidia involucrata HOM05D004273 ORTHO05D005041 5.9e-41 174.1 355 33.0
Dinv32873 Davidia involucrata HOM05D004273 ORTHO05D005041 5.9e-41 174.1 353 32.0
Lalb_Chr19g0137751 Lupinus albus HOM05D004273 ORTHO05D005041 5.9e-41 174.1 370 28.4
Pp3c14_19130 Physcomitrium patens HOM05D004273 ORTHO05D005041 5.9e-41 174.1 394 31.0
Cfa011474 Carpinus fangiana HOM05D004273 ORTHO05D005041 7.8e-41 173.7 357 30.0
CsaV3_6G017020 Cucumis sativus L. HOM05D004273 ORTHO05D005041 7.8e-41 173.7 382 29.1
MD11G1142800 Malus domestica HOM05D004273 ORTHO05D005041 7.8e-41 173.7 364 31.9
SGA_v2.0_scaffold111G31385 Striga asiatica HOM05D004273 ORTHO05D005041 1.0e-40 173.3 351 31.9
Cc01_g12600 Coffea canephora HOM05D004273 ORTHO05D005041 1.3e-40 172.9 367 30.8
Phvul.L004243 Phaseolus vulgaris HOM05D004273 ORTHO05D005041 1.7e-40 172.6 378 28.8
arahy.Tifrunner.gnm1.ann1.44D9RB Arachis hypogaea HOM05D004273 ORTHO05D005041 2.3e-40 172.2 387 29.2
Glyma.15G039800 Glycine max HOM05D004273 ORTHO05D005041 2.9e-40 171.8 345 30.4
Lsat_1_v5_gn_2_116561 Lactuca sativa HOM05D004273 ORTHO05D005041 3.8e-40 171.4 368 31.0
Aa31LG4G15500 Aethionema arabicum HOM05D004273 ORTHO05D005041 5.0e-40 171.0 361 28.5
ECA238G2787 Erigeron canadensis HOM05D004273 ORTHO05D005041 5.0e-40 171.0 378 29.6
Peaxi162Scf00679g00214 Petunia axillaris HOM05D004273 ORTHO05D005041 5.0e-40 171.0 362 29.8
CAN.G1013.9 Capsicum annuum HOM05D004273 ORTHO05D005041 6.6e-40 170.6 368 28.8
Cc02_g08070 Coffea canephora HOM05D004273 ORTHO05D005041 6.6e-40 170.6 338 31.7
TWI31G0117 Tripterygium wilfordii HOM05D004273 ORTHO05D005041 1.1e-39 169.9 372 29.3
Hma1.2p1_0533F.1_g173530 Hydrangea macrophylla HOM05D004273 ORTHO05D005041 1.5e-39 169.5 388 29.9
MSTRG.1791 Avicennia marina HOM05D004273 ORTHO05D005041 1.9e-39 169.1 357 32.5
EL10Ac2g03411 Beta vulgaris HOM05D004273 ORTHO05D005041 2.5e-39 168.7 379 28.5
CiPaw.13G097100 Carya illinoinensis HOM05D004273 ORTHO05D005041 2.5e-39 168.7 361 31.9
Mapoly0153s0026 Marchantia polymorpha HOM05D004273 ORTHO05D005041 2.5e-39 168.7 315 32.7
CSS0019329 Camellia sinensis var. sinensis HOM05D004273 ORTHO05D005041 3.3e-39 168.3 366 32.0
HanXRQChr14g0458231 Helianthus annuus HOM05D004273 ORTHO05D005041 3.3e-39 168.3 372 32.3
Ah.16g107130 Amaranthus hybridus HOM05D004273 ORTHO05D005041 4.3e-39 167.9 363 30.3
FAN16G0116 Fragaria x ananassa HOM05D004273 ORTHO05D005041 4.3e-39 167.9 425 28.5
HanXRQChr07g0201161 Helianthus annuus HOM05D004273 ORTHO05D005041 4.3e-39 167.9 397 31.0
Aqoxy4G02965 Aquilegia oxysepala HOM05D004273 ORTHO05D005041 5.6e-39 167.5 341 32.0
CSS0043051 Camellia sinensis var. sinensis HOM05D004273 ORTHO05D005041 9.5e-39 166.8 382 30.1
Nitab4.5_0014877g0010 Nicotiana tabacum HOM05D004273 ORTHO05D005041 9.5e-39 166.8 367 31.1
Dinv01561 Davidia involucrata HOM05D004273 ORTHO05D005041 1.2e-38 166.4 372 29.8
Hund04983 Selenicereus undatus HOM05D004273 ORTHO05D005041 1.2e-38 166.4 358 30.4
GSVIVG01025001001 Vitis vinifera HOM05D004273 ORTHO05D005041 1.2e-38 166.4 342 30.4
Actinidia07045 Actinidia chinensis HOM05D004273 ORTHO05D005041 2.8e-38 165.2 371 29.6
Psat7g217720 Pisum sativum HOM05D004273 ORTHO05D005041 2.8e-38 165.2 342 29.5
AUR62001817 Chenopodium quinoa HOM05D004273 ORTHO05D005041 4.7e-38 164.5 341 30.2
Pp3c9_11070 Physcomitrium patens HOM05D004273 ORTHO05D005041 6.1e-38 164.1 354 29.9
FAN11G1845 Fragaria x ananassa HOM05D004273 ORTHO05D005041 8.0e-38 163.7 410 28.8
VMungo1080G0602 Vigna mungo HOM05D004273 ORTHO05D005041 8.0e-38 163.7 364 29.4
QL01p032775 Quercus lobata HOM05D004273 ORTHO05D005041 1.4e-37 162.9 373 28.2
CSS0029075 Camellia sinensis var. sinensis HOM05D004273 ORTHO05D005041 2.3e-37 162.2 354 29.9
Nitab4.5_0001831g0040 Nicotiana tabacum HOM05D004273 ORTHO05D005041 3.0e-37 161.8 341 31.4
DCAR_005310 Daucus carota HOM05D004273 ORTHO05D005041 8.9e-37 160.2 365 29.9
Rhsim13G0085100 Rhododendron simsii HOM05D004273 ORTHO05D005041 8.9e-37 160.2 355 29.9
AUR62009603 Chenopodium quinoa HOM05D004273 ORTHO05D005041 2.0e-36 159.1 341 29.9
Ciclev10028607m.g Citrus clementina HOM05D004273 ORTHO05D005041 2.0e-36 159.1 321 29.6
MELO3C013689.2 Cucumis melo HOM05D004273 ORTHO05D005041 4.4e-36 157.9 397 28.2
Duzib168G0407 Durio zibethinus HOM05D004273 ORTHO05D005041 7.5e-36 157.1 368 31.0
Glyma.13G334700 Glycine max HOM05D004273 ORTHO05D005041 9.8e-36 156.8 351 29.1
Nn2g10411 Nelumbo nucifera HOM05D004273 ORTHO05D005041 1.3e-35 156.4 307 32.6
Zm00001eb211720 Zea mays HOM05D004273 ORTHO05D005041 1.4e-34 152.9 280 32.1
Nitab4.5_0001304g0060 Nicotiana tabacum HOM05D004273 ORTHO05D005041 3.0e-32 145.2 223 34.1
AUR62040968 Chenopodium quinoa HOM05D004273 ORTHO05D005041 3.9e-32 144.8 306 28.8
Sc06g0008260 Simmondsia chinensis HOM05D004273 ORTHO05D005041 2.5e-31 142.1 299 29.8
Haze_24060 Corylus avellana HOM05D004273 ORTHO05D005041 3.3e-31 141.7 382 27.2
Nitab4.5_0001838g0010 Nicotiana tabacum HOM05D004273 ORTHO05D005041 2.0e-28 132.5 209 34.0
Hund12542 Selenicereus undatus HOM05D004273 ORTHO05D005041 5.0e-24 117.9 222 29.7
unitig_747.g21363 Utricularia gibba HOM05D004273 ORTHO05D005041 1.5e-23 116.3 228 29.8
Lj1A935G50 Lonicera japonica HOM05D004273 ORTHO05D005041 4.7e-22 111.3 366 25.4
Ah.08g219160 Amaranthus hybridus HOM05D004273 ORTHO05D005041 7.5e-20 104.0 227 28.2
vmacro03093 Vaccinium macrocarpon HOM05D004273 ORTHO05D005041 2.9e-19 102.1 228 29.8
Actinidia07731 Actinidia chinensis HOM05D004273 ORTHO05D005041 3.0e-16 92.0 149 33.6
Actinidia07724 Actinidia chinensis HOM05D004273 ORTHO05D005041 3.1e-13 82.0 94 40.4
Lsat_1_v5_gn_2_116541 Lactuca sativa HOM05D004109 ORTHO05D005867 4.9e-11 74.7 182 25.3
Ah.08g219150 Amaranthus hybridus HOM05D004273 ORTHO05D005041 2.7e-09 68.9 115 33.0
Nn5g29601 Nelumbo nucifera HOM05D001180 ORTHO05D001055 9.6e-07 60.5 233 25.3
Nn1g04996 Nelumbo nucifera HOM05D001180 ORTHO05D001055 1.2e-06 60.1 229 24.9
Carub.0006s2720 Capsella rubella HOM05D001180 ORTHO05D001055 8.1e-06 57.4 226 24.3
Lsat_1_v5_gn_4_117200 Lactuca sativa HOM05D000394 ORTHO05D000299 8.1e-06 57.4 282 22.3


User provided reference genes

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