Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g40455 Chara braunii HOM05D005730 ORTHO05D007038 9.1e-33 142.9 68 100.0
Pp3c25_300 Physcomitrium patens HOM05D005730 ORTHO05D007038 1.7e-15 85.5 67 55.2
Aqoxy7G02690 Aquilegia oxysepala HOM05D005730 ORTHO05D007038 5.0e-15 84.0 68 57.4
Pp3c16_220 Physcomitrium patens HOM05D005730 ORTHO05D007038 1.5e-14 82.4 67 56.7
BcaB01g04043 Brassica carinata HOM05D005730 ORTHO05D007038 1.9e-14 82.0 68 55.9
BcaB02g10394 Brassica carinata HOM05D005730 ORTHO05D007038 1.9e-14 82.0 68 55.9
Thhalv10017500m.g Eutrema salsugineum HOM05D005730 ORTHO05D007038 1.9e-14 82.0 68 55.9
Sp4g13950 Schrenkiella parvula HOM05D005730 ORTHO05D007038 1.9e-14 82.0 68 55.9
Phvul.004G177400 Phaseolus vulgaris HOM05D005730 ORTHO05D007038 2.5e-14 81.6 68 54.4
Ah.10g033660 Amaranthus hybridus HOM05D005730 ORTHO05D007038 3.2e-14 81.3 68 52.9
AL4G26750 Arabidopsis lyrata HOM05D005730 ORTHO05D007038 3.2e-14 81.3 68 54.4
AT2G31490 Arabidopsis thaliana HOM05D005730 ORTHO05D007038 3.2e-14 81.3 68 54.4
BcaB06g28537 Brassica carinata HOM05D005730 ORTHO05D007038 3.2e-14 81.3 68 54.4
BcaC02g07993 Brassica carinata HOM05D005730 ORTHO05D007038 3.2e-14 81.3 68 54.4
A03p17640 Brassica napus HOM05D005730 ORTHO05D007038 3.2e-14 81.3 68 54.4
A04p24230 Brassica napus HOM05D005730 ORTHO05D007038 3.2e-14 81.3 68 54.4
C03p20730 Brassica napus HOM05D005730 ORTHO05D007038 3.2e-14 81.3 68 54.4
BolC3t14450H Brassica oleracea HOM05D005730 ORTHO05D007038 3.2e-14 81.3 68 54.4
BolC4t23397H Brassica oleracea HOM05D005730 ORTHO05D007038 3.2e-14 81.3 68 54.4
BolC4t27587H Brassica oleracea HOM05D005730 ORTHO05D007038 3.2e-14 81.3 68 54.4
BraA03t11029Z Brassica rapa HOM05D005730 ORTHO05D007038 3.2e-14 81.3 68 54.4
Carub.0004s1281 Capsella rubella HOM05D005730 ORTHO05D007038 3.2e-14 81.3 68 54.4
CARHR125130 Cardamine hirsuta HOM05D005730 ORTHO05D007038 3.2e-14 81.3 68 54.4
CiPaw.16G103100 Carya illinoinensis HOM05D005730 ORTHO05D007038 3.2e-14 81.3 68 55.9
Glyma.07G130200 Glycine max HOM05D005730 ORTHO05D007038 4.2e-14 80.9 68 54.4
Potri.006G077400 Populus trichocarpa HOM05D005730 ORTHO05D007038 5.5e-14 80.5 68 54.4
Prupe.1G065800 Prunus persica HOM05D005730 ORTHO05D007038 5.5e-14 80.5 68 54.4
VMungo0464G0384 Vigna mungo HOM05D002151 ORTHO05D002142 5.5e-14 80.5 67 53.7
CSS0014288 Camellia sinensis var. sinensis HOM05D005730 ORTHO05D007038 7.2e-14 80.1 68 54.4
CDE06G0649 Ceratophyllum demersum HOM05D005730 ORTHO05D007038 7.2e-14 80.1 68 52.9
Ciclev10010105m.g Citrus clementina HOM05D005730 ORTHO05D007038 7.2e-14 80.1 68 54.4
Gohir.D03G138800 Gossypium hirsutum HOM05D005730 ORTHO05D007038 7.2e-14 80.1 68 52.9
Gorai.003G145600 Gossypium raimondii HOM05D005730 ORTHO05D007038 7.2e-14 80.1 68 52.9
Lalb_Chr14g0361711 Lupinus albus HOM05D005730 ORTHO05D007038 7.2e-14 80.1 68 54.4
Phvul.010G060700 Phaseolus vulgaris HOM05D005730 ORTHO05D007038 9.4e-14 79.7 68 52.9
Gohir.A03G029700 Gossypium hirsutum HOM05D005730 ORTHO05D007038 1.2e-13 79.3 68 52.9
QL11p009271 Quercus lobata HOM05D005730 ORTHO05D007038 1.2e-13 79.3 67 55.2
TPR.G21357 Trifolium pratense HOM05D005730 ORTHO05D007038 1.2e-13 79.3 66 56.1
Cfa020734 Carpinus fangiana HOM05D005730 ORTHO05D007038 1.6e-13 79.0 68 54.4
GSVIVG01029731001 Vitis vinifera HOM05D005730 ORTHO05D007038 1.6e-13 79.0 68 54.4
FvH4_4g06270 Fragaria vesca HOM05D005730 ORTHO05D007038 2.1e-13 78.6 68 50.0
FAN12G2290 Fragaria x ananassa HOM05D005730 ORTHO05D007038 2.1e-13 78.6 68 50.0
Lj2g0002952 Lotus japonicus HOM05D005730 ORTHO05D007038 2.1e-13 78.6 68 55.9
Os01g0732100 Oryza sativa ssp. japonica HOM05D005730 ORTHO05D007038 2.1e-13 78.6 68 52.9
PGR142G0999 Punica granatum HOM05D005730 ORTHO05D007038 2.1e-13 78.6 68 52.9
RcHm_v2.0_Chr4g0397991 Rosa chinensis HOM05D005730 ORTHO05D007038 2.1e-13 78.6 68 50.0
arahy.Tifrunner.gnm1.ann1.8U1ME7 Arachis hypogaea HOM05D005730 ORTHO05D007038 2.7e-13 78.2 68 52.9
Eucgr.D02622 Eucalyptus grandis HOM05D005730 ORTHO05D007038 2.7e-13 78.2 68 51.5
MD16G1239700 Malus domestica HOM05D005730 ORTHO05D007038 2.7e-13 78.2 68 51.5
Thecc.06G194900 Theobroma cacao HOM05D005730 ORTHO05D007038 2.7e-13 78.2 68 52.9
TAR383G0493 Trochodendron aralioides HOM05D005730 ORTHO05D007038 2.7e-13 78.2 68 51.5
arahy.Tifrunner.gnm1.ann1.YLZA1F Arachis hypogaea HOM05D005730 ORTHO05D007038 3.6e-13 77.8 68 52.9
MD13G1234900 Malus domestica HOM05D005730 ORTHO05D007038 3.6e-13 77.8 68 52.9
THA.LOC104815318 Tarenaya hassleriana HOM05D005730 ORTHO05D007038 3.6e-13 77.8 68 52.9
THA.LOC109116496 Tarenaya hassleriana HOM05D005730 ORTHO05D007038 3.6e-13 77.8 68 52.9
THA.LOC109117265 Tarenaya hassleriana HOM05D005730 ORTHO05D007038 3.6e-13 77.8 68 52.9
Aa31LG5G7440 Aethionema arabicum HOM05D005730 ORTHO05D007038 4.7e-13 77.4 68 51.5
Nitab4.5_0004188g0020 Nicotiana tabacum HOM05D005730 ORTHO05D007038 4.7e-13 77.4 67 49.3
Atru.chr10.916 Acer truncatum HOM05D005730 ORTHO05D007038 8.0e-13 76.6 68 50.0
Atru.chr10.931 Acer truncatum HOM05D005730 ORTHO05D007038 8.0e-13 76.6 68 50.0
CsaV3_1G004610 Cucumis sativus L. HOM05D005730 ORTHO05D007038 8.0e-13 76.6 68 52.9
Dinv06659 Davidia involucrata HOM05D005730 ORTHO05D007038 8.0e-13 76.6 68 51.5
Lsat_1_v5_gn_7_59680 Lactuca sativa HOM05D005730 ORTHO05D007038 8.0e-13 76.6 67 53.7
Sopen05g027690 Solanum pennellii HOM05D005730 ORTHO05D007038 8.0e-13 76.6 67 49.3
CANSAT01G0847 Cannabis sativa HOM05D005730 ORTHO05D007038 1.0e-12 76.3 68 50.0
Cc00_g00480 Coffea canephora HOM05D005730 ORTHO05D007038 1.4e-12 75.9 68 48.5
Manes.11G087000 Manihot esculenta HOM05D005730 ORTHO05D007038 1.4e-12 75.9 68 50.0
Os01g0750800 Oryza sativa ssp. japonica HOM05D005730 ORTHO05D007038 1.4e-12 75.9 68 52.9
Psat1g051120 Pisum sativum HOM05D005730 ORTHO05D007038 1.4e-12 75.9 66 51.5
Duzib170G0040 Durio zibethinus HOM05D005730 ORTHO05D007038 1.8e-12 75.5 68 50.0
Actinidia38519 Actinidia chinensis HOM05D005730 ORTHO05D007038 2.3e-12 75.1 68 48.5
HanXRQChr03g0064531 Helianthus annuus HOM05D005730 ORTHO05D007038 2.3e-12 75.1 67 49.3
HanXRQChr09g0243241 Helianthus annuus HOM05D005730 ORTHO05D007038 2.3e-12 75.1 67 49.3
Manes.04G088600 Manihot esculenta HOM05D005730 ORTHO05D007038 2.3e-12 75.1 68 50.0
Zm00001eb368480 Zea mays HOM05D005730 ORTHO05D007038 3.0e-12 74.7 68 51.5
MELO3C017388.2 Cucumis melo HOM05D005730 ORTHO05D007038 4.0e-12 74.3 64 53.1
Sc09g0007480 Simmondsia chinensis HOM05D005730 ORTHO05D007038 4.0e-12 74.3 68 50.0
ClCG06G014030 Citrullus lanatus HOM05D005730 ORTHO05D007038 5.2e-12 73.9 65 50.8
Migut.L00209 Erythranthe guttata HOM05D005730 ORTHO05D007038 6.8e-12 73.6 66 51.5
Nn2g12785 Nelumbo nucifera HOM05D005730 ORTHO05D007038 6.8e-12 73.6 68 47.1
Duzib177G0654 Durio zibethinus HOM05D005730 ORTHO05D007038 8.8e-12 73.2 68 48.5
ECA240G4690 Erigeron canadensis HOM05D005730 ORTHO05D007038 8.8e-12 73.2 67 49.3
PSO170G3580 Papaver somniferum HOM05D005730 ORTHO05D007038 1.2e-11 72.8 66 50.0
SGA_v2.0_scaffold143G35734 Striga asiatica HOM05D005730 ORTHO05D007038 1.2e-11 72.8 66 48.5
PSO063G5181 Papaver somniferum HOM05D005730 ORTHO05D007038 1.5e-11 72.4 66 48.5
Peaxi162Scf00906g00224 Petunia axillaris HOM05D005730 ORTHO05D007038 1.5e-11 72.4 59 50.8
RcHm_v2.0_Chr6g0293611 Rosa chinensis HOM05D005730 ORTHO05D007038 1.5e-11 72.4 68 45.6
TWI63G0907 Tripterygium wilfordii HOM05D005730 ORTHO05D007038 1.5e-11 72.4 66 48.5
HPP92_021358 Vanilla planifolia HOM05D005730 ORTHO05D007038 1.5e-11 72.4 64 50.0
Migut.J00829 Erythranthe guttata HOM05D005730 ORTHO05D007038 2.6e-11 71.6 66 50.0
Sed0021240 Sechium edule HOM05D005730 ORTHO05D007038 4.4e-11 70.9 64 51.6
PGSC0003DMG400013688 Solanum tuberosum HOM05D000482 ORTHO05D000349 4.4e-11 70.9 51 58.8
unitig_26.g9132 Utricularia gibba HOM05D005730 ORTHO05D007038 4.4e-11 70.9 66 47.0
Zm00001eb370910 Zea mays HOM05D005730 ORTHO05D007038 4.4e-11 70.9 68 51.5
Peaxi162Scf00320g00055 Petunia axillaris HOM05D005730 ORTHO05D007038 5.7e-11 70.5 51 56.9
SEGI_08291 Sequoiadendron giganteum HOM05D005730 ORTHO05D007038 5.7e-11 70.5 54 55.6
Mapoly0005s0214 Marchantia polymorpha HOM05D005730 ORTHO05D007038 9.8e-11 69.7 68 44.1
Nitab4.5_0000413g0090 Nicotiana tabacum HOM05D005730 ORTHO05D007038 9.8e-11 69.7 56 51.8
RcHm_v2.0_Chr6g0293601 Rosa chinensis HOM05D005730 ORTHO05D007038 9.8e-11 69.7 68 45.6
Solyc05g046390.3 Solanum lycopersicum HOM05D005730 ORTHO05D007038 9.8e-11 69.7 51 56.9
BraA05t20340Z Brassica rapa HOM05D000059 ORTHO05D000528 1.3e-10 69.3 51 60.8
Nitab4.5_0005014g0020 Nicotiana tabacum HOM05D001912 ORTHO05D001975 1.7e-10 68.9 51 54.9
A05p14120 Brassica napus HOM05D005730 ORTHO05D007038 2.2e-10 68.6 51 60.8
BcaC02g11258 Brassica carinata HOM05D005730 ORTHO05D007038 2.8e-10 68.2 51 56.9
C04p60960 Brassica napus HOM05D005730 ORTHO05D007038 2.8e-10 68.2 51 56.9
BraA04t17942Z Brassica rapa HOM05D000059 ORTHO05D000528 2.8e-10 68.2 51 56.9
Hund03236 Selenicereus undatus HOM05D005730 ORTHO05D007038 2.8e-10 68.2 51 58.8
AUR62020709 Chenopodium quinoa HOM05D005730 ORTHO05D007038 4.8e-10 67.4 51 54.9
AUR62028015 Chenopodium quinoa HOM05D005730 ORTHO05D007038 4.8e-10 67.4 51 54.9
COL.COLO4_33448 Corchorus olitorius HOM05D005730 ORTHO05D007038 4.8e-10 67.4 51 58.8
Ca_25629_v3 Cicer arietinum L. HOM05D005730 ORTHO05D007038 6.3e-10 67.0 51 60.8
FAN28G2060 Fragaria x ananassa HOM05D002523 ORTHO05D002951 6.3e-10 67.0 60 48.3
Sabra06G0058600 Salix brachista HOM05D005730 ORTHO05D007038 6.3e-10 67.0 51 56.9
SHI37948 Sapria himalayana HOM05D005730 ORTHO05D007038 6.3e-10 67.0 67 44.8
Medtr6g093010 Medicago truncatula HOM05D005730 ORTHO05D007038 8.3e-10 66.6 51 56.9
EL10Ac2g03641 Beta vulgaris HOM05D005730 ORTHO05D007038 1.1e-09 66.2 51 52.9
FAN17G0140 Fragaria x ananassa HOM05D005730 ORTHO05D007038 1.1e-09 66.2 54 48.1
FAN17G1913 Fragaria x ananassa HOM05D005730 ORTHO05D007038 1.1e-09 66.2 53 49.1
FAN22G1024 Fragaria x ananassa HOM05D005730 ORTHO05D007038 1.4e-09 65.9 51 51.0
FAN07G1689 Fragaria x ananassa HOM05D005730 ORTHO05D007038 1.8e-09 65.5 51 51.0
HanXRQChr13g0388231 Helianthus annuus HOM05D005730 ORTHO05D007038 2.4e-09 65.1 51 52.9
Hma1.2p1_0314F.1_g121950 Hydrangea macrophylla HOM05D005730 ORTHO05D007038 2.4e-09 65.1 51 54.9
vmacro20778 Vaccinium macrocarpon HOM05D005730 ORTHO05D007038 4.1e-09 64.3 51 52.9
Cpa.g.sc115.33 Carica papaya HOM05D005730 ORTHO05D007038 5.4e-09 63.9 51 52.9
TAR626G1073 Trochodendron aralioides HOM05D005730 ORTHO05D007038 5.4e-09 63.9 51 52.9
DCAR_019791 Daucus carota HOM05D005730 ORTHO05D007038 7.0e-09 63.5 51 51.0
Peaxi162Scf00204g00039 Petunia axillaris HOM05D005730 ORTHO05D007038 9.1e-09 63.2 67 43.3
ATR0568G059 Amborella trichopoda HOM05D005730 ORTHO05D007038 1.6e-08 62.4 51 54.9
FAN11G1086 Fragaria x ananassa HOM05D005730 ORTHO05D007038 1.6e-08 62.4 51 49.0
MCO07G159 Micromonas commoda HOM05D005730 ORTHO05D007038 1.6e-08 62.4 61 45.9
Mapoly0005s0215 Marchantia polymorpha HOM05D005730 ORTHO05D007038 5.9e-08 60.5 55 41.8
SalBow6G6230 Salvia bowleyana HOM05D005730 ORTHO05D007038 5.9e-08 60.5 51 51.0
Migut.L00210 Erythranthe guttata HOM05D005730 ORTHO05D007038 1.0e-07 59.7 48 56.2
Solyc09g059220.1 Solanum lycopersicum HOM05D005730 ORTHO05D007038 8.6e-07 56.6 67 41.8
Migut.K01179 Erythranthe guttata HOM05D005730 ORTHO05D007038 3.3e-06 54.7 44 54.5
Lj5A722T6 Lonicera japonica HOM05D005730 ORTHO05D007038 7.2e-06 53.5 47 57.4


User provided reference genes

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