Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g40341 Chara braunii HOM05D002920 ORTHO05D003118 0.0e+00 1276.5 688 100.0
TAR381G0245 Trochodendron aralioides HOM05D002920 ORTHO05D003118 1.1e-29 136.0 619 27.0
TAR625G0757 Trochodendron aralioides HOM05D002920 ORTHO05D003118 7.3e-29 133.3 676 26.8
CSS0008058 Camellia sinensis var. sinensis HOM05D002920 ORTHO05D003118 1.2e-28 132.5 657 25.9
Nitab4.5_0000354g0140 Nicotiana tabacum HOM05D002920 ORTHO05D003118 1.8e-27 128.6 659 27.2
Sed0007128 Sechium edule HOM05D002920 ORTHO05D003118 4.0e-27 127.5 656 26.4
CANSAT11G0038 Cannabis sativa HOM05D002920 ORTHO05D003118 1.2e-26 125.9 655 27.2
Actinidia19621 Actinidia chinensis HOM05D002920 ORTHO05D003118 1.5e-26 125.6 606 26.4
MELO3C011076.2 Cucumis melo HOM05D002920 ORTHO05D003118 2.0e-26 125.2 665 26.6
RcHm_v2.0_Chr7g0235041 Rosa chinensis HOM05D002920 ORTHO05D003118 2.0e-26 125.2 622 27.2
Manes.18G056500 Manihot esculenta HOM05D002920 ORTHO05D003118 3.4e-26 124.4 613 28.5
Ca_16019_v3 Cicer arietinum L. HOM05D002920 ORTHO05D003118 4.4e-26 124.0 659 25.3
EL10Ac1g00492 Beta vulgaris HOM05D002920 ORTHO05D003118 5.8e-26 123.6 663 25.9
Nitab4.5_0005065g0010 Nicotiana tabacum HOM05D002920 ORTHO05D003118 7.5e-26 123.2 659 26.6
CsaV3_2G030160 Cucumis sativus L. HOM05D002920 ORTHO05D003118 9.8e-26 122.9 670 26.0
TPR.G6371 Trifolium pratense HOM05D002920 ORTHO05D003118 9.8e-26 122.9 669 26.3
Dinv44873 Davidia involucrata HOM05D002920 ORTHO05D003118 1.3e-25 122.5 628 26.3
arahy.Tifrunner.gnm1.ann1.WZJ2AS Arachis hypogaea HOM05D002920 ORTHO05D003118 2.2e-25 121.7 613 25.9
PSO170G4177 Papaver somniferum HOM05D002920 ORTHO05D003118 2.2e-25 121.7 634 25.6
PSO210G5781 Papaver somniferum HOM05D002920 ORTHO05D003118 2.2e-25 121.7 633 26.2
BcaB04g20194 Brassica carinata HOM05D002920 ORTHO05D003118 3.7e-25 120.9 623 26.5
FAN18G2688 Fragaria x ananassa HOM05D002920 ORTHO05D003118 4.9e-25 120.6 681 26.6
Psat5g047200 Pisum sativum HOM05D002920 ORTHO05D003118 6.4e-25 120.2 663 25.8
Rhsim06G0070200 Rhododendron simsii HOM05D002920 ORTHO05D003118 6.4e-25 120.2 678 26.4
THA.LOC104823692 Tarenaya hassleriana HOM05D002920 ORTHO05D003118 6.4e-25 120.2 654 25.5
FAN04G1888 Fragaria x ananassa HOM05D002920 ORTHO05D003118 8.3e-25 119.8 682 27.0
FvH4_5g34390 Fragaria vesca HOM05D002920 ORTHO05D003118 1.4e-24 119.0 672 26.9
Potri.002G110700 Populus trichocarpa HOM05D002920 ORTHO05D003118 2.4e-24 118.2 646 26.9
Aqoxy5G01357 Aquilegia oxysepala HOM05D002920 ORTHO05D003118 3.2e-24 117.9 634 26.5
MBI16_g06013_MAGBIO Magnolia biondii HOM05D002920 ORTHO05D003118 4.1e-24 117.5 647 25.8
GSVIVG01009199001 Vitis vinifera HOM05D002920 ORTHO05D003118 4.1e-24 117.5 659 25.6
BcaC09g49498 Brassica carinata HOM05D002920 ORTHO05D003118 7.1e-24 116.7 610 25.4
C01p35900 Brassica napus HOM05D002920 ORTHO05D003118 7.1e-24 116.7 610 25.4
BolC1t03549H Brassica oleracea HOM05D002920 ORTHO05D003118 7.1e-24 116.7 610 25.4
BraA01t02963Z Brassica rapa HOM05D002920 ORTHO05D003118 9.2e-24 116.3 613 25.3
Gohir.A05G218800 Gossypium hirsutum HOM05D002920 ORTHO05D003118 1.2e-23 115.9 646 25.4
Nn1g05621 Nelumbo nucifera HOM05D002920 ORTHO05D003118 1.2e-23 115.9 635 26.1
TWI12G0386 Tripterygium wilfordii HOM05D002920 ORTHO05D003118 1.2e-23 115.9 639 26.4
CAN.G1104.5 Capsicum annuum HOM05D002920 ORTHO05D003118 1.6e-23 115.5 650 26.2
Lj4C86G6 Lonicera japonica HOM05D002920 ORTHO05D003118 2.1e-23 115.2 654 26.1
A01p28350 Brassica napus HOM05D002920 ORTHO05D003118 2.7e-23 114.8 614 25.1
Solyc12g088010.2 Solanum lycopersicum HOM05D002920 ORTHO05D003118 2.7e-23 114.8 657 25.3
arahy.Tifrunner.gnm1.ann1.3DHU48 Arachis hypogaea HOM05D002920 ORTHO05D003118 3.5e-23 114.4 615 25.4
Phvul.009G035200 Phaseolus vulgaris HOM05D002920 ORTHO05D003118 3.5e-23 114.4 644 25.0
SGA_v2.0_scaffold235G43665 Striga asiatica HOM05D002920 ORTHO05D003118 4.6e-23 114.0 616 25.5
Cc10_g08510 Coffea canephora HOM05D002920 ORTHO05D003118 6.0e-23 113.6 662 24.9
Prupe.1G535700 Prunus persica HOM05D002920 ORTHO05D003118 6.0e-23 113.6 633 25.4
COL.COLO4_35270 Corchorus olitorius HOM05D002920 ORTHO05D003118 7.8e-23 113.2 647 25.5
Gorai.009G228700 Gossypium raimondii HOM05D002920 ORTHO05D003118 7.8e-23 113.2 634 24.8
Nitab4.5_0000131g0060 Nicotiana tabacum HOM05D002920 ORTHO05D003118 7.8e-23 113.2 637 26.1
ClCG08G011580 Citrullus lanatus HOM05D002920 ORTHO05D003118 1.0e-22 112.8 677 25.7
FAN13G0555 Fragaria x ananassa HOM05D002920 ORTHO05D003118 1.0e-22 112.8 777 25.9
Sc26g0003000 Simmondsia chinensis HOM05D002920 ORTHO05D003118 1.0e-22 112.8 624 27.4
Carub.0002s0632 Capsella rubella HOM05D002920 ORTHO05D003118 2.3e-22 111.7 628 24.7
Gohir.D05G266900 Gossypium hirsutum HOM05D002920 ORTHO05D003118 2.3e-22 111.7 643 25.0
MD15G1388100 Malus domestica HOM05D002920 ORTHO05D003118 2.3e-22 111.7 639 26.1
Rhsim07G0212900 Rhododendron simsii HOM05D002920 ORTHO05D003118 2.3e-22 111.7 643 25.3
Hund26821 Selenicereus undatus HOM05D002920 ORTHO05D003118 2.3e-22 111.7 640 26.4
ATR0767G155 Amborella trichopoda HOM05D002920 ORTHO05D003118 3.0e-22 111.3 669 25.9
SMO116G0207 Selaginella moellendorffii HOM05D002920 ORTHO05D003118 3.0e-22 111.3 652 25.6
Sopen12g030040 Solanum pennellii HOM05D002920 ORTHO05D003118 3.0e-22 111.3 634 25.7
Thecc.08G073100 Theobroma cacao HOM05D002920 ORTHO05D003118 3.0e-22 111.3 686 24.1
TWI56G0278 Tripterygium wilfordii HOM05D002920 ORTHO05D003118 3.0e-22 111.3 657 25.3
Phvul.008G183000 Phaseolus vulgaris HOM05D002920 ORTHO05D003118 3.9e-22 110.9 625 25.1
BraA09t37476Z Brassica rapa HOM05D002920 ORTHO05D003118 5.1e-22 110.5 626 25.4
Eucgr.F00435 Eucalyptus grandis HOM05D002920 ORTHO05D003118 5.1e-22 110.5 655 25.0
Gohir.A05G264400 Gossypium hirsutum HOM05D002920 ORTHO05D003118 5.1e-22 110.5 624 25.3
Gorai.009G279000 Gossypium raimondii HOM05D002920 ORTHO05D003118 5.1e-22 110.5 643 25.0
CARHR053740 Cardamine hirsuta HOM05D002920 ORTHO05D003118 6.6e-22 110.2 624 25.5
Glyma.02G215800 Glycine max HOM05D002920 ORTHO05D003118 6.6e-22 110.2 655 24.3
Gohir.D05G221500 Gossypium hirsutum HOM05D002920 ORTHO05D003118 6.6e-22 110.2 660 24.8
CiPaw.07G163600 Carya illinoinensis HOM05D002920 ORTHO05D003118 8.6e-22 109.8 643 24.6
Duzib041G0528 Durio zibethinus HOM05D002920 ORTHO05D003118 8.6e-22 109.8 655 24.6
MD08G1201800 Malus domestica HOM05D002920 ORTHO05D003118 1.5e-21 109.0 662 26.0
Thhalv10023209m.g Eutrema salsugineum HOM05D002920 ORTHO05D003118 1.9e-21 108.6 610 25.6
AagrBONN_evm.TU.Sc2ySwM_344.1562 Anthoceros agrestis HOM05D002920 ORTHO05D003118 2.5e-21 108.2 227 31.7
C09p23100 Brassica napus HOM05D002920 ORTHO05D003118 2.5e-21 108.2 647 25.3
BolC9t55228H Brassica oleracea HOM05D002920 ORTHO05D003118 2.5e-21 108.2 647 25.3
Glyma.04G096600 Glycine max HOM05D002920 ORTHO05D003118 2.5e-21 108.2 636 24.5
Ah.05g171450 Amaranthus hybridus HOM05D002920 ORTHO05D003118 3.3e-21 107.8 627 24.4
Lj1g0004035 Lotus japonicus HOM05D002920 ORTHO05D003118 3.3e-21 107.8 631 25.0
CAN.G193.3 Capsicum annuum HOM05D002920 ORTHO05D003118 4.3e-21 107.5 626 26.0
ECA247G2620 Erigeron canadensis HOM05D002920 ORTHO05D003118 4.3e-21 107.5 654 25.5
Sp2g05360 Schrenkiella parvula HOM05D002920 ORTHO05D003118 4.3e-21 107.5 624 25.3
Sopen04g030270 Solanum pennellii HOM05D002920 ORTHO05D003118 4.3e-21 107.5 640 26.6
Atru.chr13.989 Acer truncatum HOM05D002920 ORTHO05D003118 5.6e-21 107.1 636 26.4
Sed0001865 Sechium edule HOM05D002920 ORTHO05D003118 5.6e-21 107.1 670 25.7
Glyma.06G098300 Glycine max HOM05D002920 ORTHO05D003118 7.3e-21 106.7 628 25.2
DCAR_032088 Daucus carota HOM05D002920 ORTHO05D003118 9.5e-21 106.3 661 26.0
Sabra02G0087200 Salix brachista HOM05D002920 ORTHO05D003118 9.5e-21 106.3 662 26.4
CDE07G0298 Ceratophyllum demersum HOM05D002920 ORTHO05D003118 1.2e-20 105.9 673 25.6
AUR62014366 Chenopodium quinoa HOM05D002920 ORTHO05D003118 1.6e-20 105.5 627 24.6
PGR042G2097 Punica granatum HOM05D002920 ORTHO05D003118 2.1e-20 105.1 631 25.5
C04p51730 Brassica napus HOM05D002920 ORTHO05D003118 2.8e-20 104.8 644 25.6
AL2G18260 Arabidopsis lyrata HOM05D002920 ORTHO05D003118 3.6e-20 104.4 632 25.2
AT1G58250 Arabidopsis thaliana HOM05D002920 ORTHO05D003118 3.6e-20 104.4 625 24.6
CSS0043684 Camellia sinensis var. sinensis HOM05D002920 ORTHO05D003118 3.6e-20 104.4 427 26.9
Solyc04g076540.4 Solanum lycopersicum HOM05D002920 ORTHO05D003118 3.6e-20 104.4 634 26.3
BcaC04g22122 Brassica carinata HOM05D002920 ORTHO05D003118 4.7e-20 104.0 650 24.8
Duzib116G0095 Durio zibethinus HOM05D002920 ORTHO05D003118 4.7e-20 104.0 663 25.6
Lalb_Chr10g0102771 Lupinus albus HOM05D002920 ORTHO05D003118 4.7e-20 104.0 615 24.1
Sp4g01560 Schrenkiella parvula HOM05D002920 ORTHO05D003118 6.2e-20 103.6 649 25.9
Cfa013811 Carpinus fangiana HOM05D002920 ORTHO05D003118 8.1e-20 103.2 649 24.3
Lalb_Chr08g0242591 Lupinus albus HOM05D002920 ORTHO05D003118 8.1e-20 103.2 649 25.0
Psat2g064120 Pisum sativum HOM05D002920 ORTHO05D003118 1.1e-19 102.8 647 25.3
PGSC0003DMG400002051 Solanum tuberosum HOM05D002920 ORTHO05D003118 1.1e-19 102.8 541 26.4
Thhalv10000004m.g Eutrema salsugineum HOM05D002920 ORTHO05D003118 2.3e-19 101.7 662 26.3
Aa31LG4G11400 Aethionema arabicum HOM05D002920 ORTHO05D003118 3.1e-19 101.3 629 25.4
Peaxi162Scf00160g01034 Petunia axillaris HOM05D002920 ORTHO05D003118 4.0e-19 100.9 656 25.9
TPR.G30876 Trifolium pratense HOM05D002920 ORTHO05D003118 4.0e-19 100.9 614 25.1
VMungo1309G0011 Vigna mungo HOM05D002920 ORTHO05D003118 4.0e-19 100.9 654 24.5
A04p17040 Brassica napus HOM05D002920 ORTHO05D003118 5.2e-19 100.5 644 25.3
AL8G23560 Arabidopsis lyrata HOM05D002920 ORTHO05D003118 6.8e-19 100.1 595 25.5
SalBow2G2368 Salvia bowleyana HOM05D002920 ORTHO05D003118 6.8e-19 100.1 654 24.5
TPR.G26343 Trifolium pratense HOM05D002920 ORTHO05D003118 6.8e-19 100.1 228 32.0
Carub.0008s0955 Capsella rubella HOM05D002920 ORTHO05D003118 8.9e-19 99.8 600 25.0
CARHR053650 Cardamine hirsuta HOM05D002920 ORTHO05D003118 1.2e-18 99.4 621 24.3
Medtr3g099880 Medicago truncatula HOM05D002920 ORTHO05D003118 1.2e-18 99.4 633 24.6
Nn7g36727 Nelumbo nucifera HOM05D002920 ORTHO05D003118 1.5e-18 99.0 694 24.6
HPP92_018503 Vanilla planifolia HOM05D002920 ORTHO05D003118 1.5e-18 99.0 631 24.2
BolC4t26752H Brassica oleracea HOM05D002920 ORTHO05D003118 3.4e-18 97.8 642 25.2
unitig_578.g16182 Utricularia gibba HOM05D002920 ORTHO05D003118 4.4e-18 97.4 653 24.8
BraA04t17332Z Brassica rapa HOM05D002920 ORTHO05D003118 7.6e-18 96.7 642 25.2
Peaxi162Scf01112g00017 Petunia axillaris HOM05D002920 ORTHO05D003118 7.6e-18 96.7 613 26.6
AT5G49680 Arabidopsis thaliana HOM05D002920 ORTHO05D003118 1.7e-17 95.5 631 25.4
LjContig00408g0017356 Lotus japonicus HOM05D002920 ORTHO05D003118 1.7e-17 95.5 631 24.7
Ciclev10000004m.g Citrus clementina HOM05D002920 ORTHO05D003118 2.2e-17 95.1 641 23.7
Mapoly0099s0021 Marchantia polymorpha HOM05D002920 ORTHO05D003118 2.2e-17 95.1 639 24.9
VMungo0647G0360 Vigna mungo HOM05D002920 ORTHO05D003118 2.9e-17 94.7 640 24.5
CARHR259160 Cardamine hirsuta HOM05D002920 ORTHO05D003118 6.4e-17 93.6 646 24.6
arahy.Tifrunner.gnm1.ann1.GN9VME Arachis hypogaea HOM05D002920 ORTHO05D003118 8.3e-17 93.2 624 24.8
MSTRG.24431 Avicennia marina HOM05D002920 ORTHO05D003118 8.3e-17 93.2 662 24.5
Migut.N02861 Erythranthe guttata HOM05D002920 ORTHO05D003118 1.1e-16 92.8 644 25.6
HanXRQChr02g0046051 Helianthus annuus HOM05D002920 ORTHO05D003118 1.1e-16 92.8 646 25.1
THA.LOC104817630 Tarenaya hassleriana HOM05D002920 ORTHO05D003118 1.4e-16 92.4 639 24.4
A08p06260 Brassica napus HOM05D002920 ORTHO05D003118 1.9e-16 92.0 223 30.0
Aa31LG2G10870 Aethionema arabicum HOM05D002920 ORTHO05D003118 2.4e-16 91.7 619 23.9
arahy.Tifrunner.gnm1.ann1.LW385E Arachis hypogaea HOM05D002920 ORTHO05D003118 2.4e-16 91.7 619 24.9
Sp1g33860 Schrenkiella parvula HOM05D002920 ORTHO05D003118 7.1e-16 90.1 632 25.3
vmacro04641 Vaccinium macrocarpon HOM05D002920 ORTHO05D003118 7.1e-16 90.1 132 36.4
Manes.05G189400 Manihot esculenta HOM05D002920 ORTHO05D003118 9.2e-16 89.7 649 25.3
Nitab4.5_0005345g0040 Nicotiana tabacum HOM05D002920 ORTHO05D003118 1.2e-15 89.4 208 32.2
Pp3c12_12980 Physcomitrium patens HOM05D002920 ORTHO05D003118 1.2e-15 89.4 637 25.1
Ca_05459_v3 Cicer arietinum L. HOM05D002920 ORTHO05D003118 3.5e-15 87.8 196 31.6
Zm00001eb394580 Zea mays HOM05D002920 ORTHO05D003118 2.3e-14 85.1 643 25.0
Medtr5g066650 Medicago truncatula HOM05D002920 ORTHO05D003118 3.9e-14 84.3 634 24.6
QL09p018218 Quercus lobata HOM05D002920 ORTHO05D003118 5.1e-14 84.0 213 29.1
CAN.G375.37 Capsicum annuum HOM05D002920 ORTHO05D003118 1.1e-13 82.8 205 29.8
ECA232G1296 Erigeron canadensis HOM05D002920 ORTHO05D003118 5.6e-13 80.5 649 23.4
C08p07060 Brassica napus HOM05D002920 ORTHO05D003118 9.6e-13 79.7 568 22.7
BolC8t47550H Brassica oleracea HOM05D002920 ORTHO05D003118 9.6e-13 79.7 568 22.7
MD08G1208300 Malus domestica HOM05D002920 ORTHO05D003118 9.6e-13 79.7 494 25.9
BcaC07g37279 Brassica carinata HOM05D002920 ORTHO05D003118 6.2e-12 77.0 595 22.9
Lsat_1_v5_gn_9_80681 Lactuca sativa HOM05D002920 ORTHO05D003118 1.4e-11 75.9 609 24.0
BraA08t32630Z Brassica rapa HOM05D002920 ORTHO05D003118 1.5e-10 72.4 616 22.7
Zm00001eb051870 Zea mays HOM05D002920 ORTHO05D003118 1.3e-09 69.3 627 24.4
SEGI_04147 Sequoiadendron giganteum HOM05D002920 ORTHO05D003118 1.7e-09 68.9 157 30.6
Hund17269 Selenicereus undatus HOM05D002920 ORTHO05D003118 1.9e-08 65.5 121 35.5
Lsat_1_v5_gn_1_1961 Lactuca sativa HOM05D002920 ORTHO05D003118 1.0e-06 59.7 667 22.9
SEGI_38853 Sequoiadendron giganteum HOM05D002920 ORTHO05D003118 6.6e-06 57.0 70 42.9


User provided reference genes

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