Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g40208 Chara braunii HOM05D003907 ORTHO05D004819 2.8e-291 1004.6 526 100.0
CBR_g53729 Chara braunii HOM05D003907 ORTHO05D004819 9.3e-210 733.8 521 71.4
Nn2g11497 Nelumbo nucifera HOM05D003907 ORTHO05D004819 2.2e-174 616.3 522 61.9
GSVIVG01033959001 Vitis vinifera HOM05D003907 ORTHO05D004819 4.8e-174 615.1 522 61.7
Cc06_g01360 Coffea canephora HOM05D003907 ORTHO05D004819 8.2e-174 614.4 522 61.3
Oeu041306.1 Olea europaea HOM05D003907 ORTHO05D004819 8.2e-174 614.4 520 62.5
MSTRG.26811 Avicennia marina HOM05D003907 ORTHO05D004819 1.1e-173 614.0 522 60.9
Glyma.18G200800 Glycine max HOM05D003907 ORTHO05D004819 1.1e-173 614.0 520 62.7
Glyma.07G149900 Glycine max HOM05D003907 ORTHO05D004819 1.4e-173 613.6 520 62.5
HanXRQChr10g0299881 Helianthus annuus HOM05D003907 ORTHO05D004819 1.4e-173 613.6 522 62.1
Mapoly0058s0053 Marchantia polymorpha HOM05D003907 ORTHO05D004819 4.1e-173 612.1 513 61.8
Sabra16G0111700 Salix brachista HOM05D003907 ORTHO05D004819 4.1e-173 612.1 522 61.9
TWI53G0466 Tripterygium wilfordii HOM05D003907 ORTHO05D004819 4.1e-173 612.1 522 61.7
Actinidia05367 Actinidia chinensis HOM05D003907 ORTHO05D004819 9.1e-173 610.9 520 61.3
Aqoxy2G00900 Aquilegia oxysepala HOM05D003907 ORTHO05D004819 1.2e-172 610.5 522 60.5
CANSAT35G0110 Cannabis sativa HOM05D003907 ORTHO05D004819 1.2e-172 610.5 522 61.5
TWI74G1106 Tripterygium wilfordii HOM05D003907 ORTHO05D004819 1.2e-172 610.5 522 61.3
Cfa017208 Carpinus fangiana HOM05D003907 ORTHO05D004819 1.6e-172 610.1 522 61.1
Gorai.006G182500 Gossypium raimondii HOM05D003907 ORTHO05D004819 1.6e-172 610.1 522 61.7
Potri.006G100200 Populus trichocarpa HOM05D003907 ORTHO05D004819 1.6e-172 610.1 514 62.1
Potri.016G116200 Populus trichocarpa HOM05D003907 ORTHO05D004819 1.6e-172 610.1 522 61.3
Lsat_1_v5_gn_9_34621 Lactuca sativa HOM05D003907 ORTHO05D004819 2.0e-172 609.8 522 61.7
arahy.Tifrunner.gnm1.ann1.NAY5W3 Arachis hypogaea HOM05D003907 ORTHO05D004819 2.6e-172 609.4 522 62.3
arahy.Tifrunner.gnm1.ann1.S2G015 Arachis hypogaea HOM05D003907 ORTHO05D004819 2.6e-172 609.4 522 62.3
Prupe.6G277300 Prunus persica HOM05D003907 ORTHO05D004819 2.6e-172 609.4 522 60.7
Gohir.A09G165200 Gossypium hirsutum HOM05D003907 ORTHO05D004819 3.5e-172 609.0 522 61.5
Gohir.D09G160800 Gossypium hirsutum HOM05D003907 ORTHO05D004819 3.5e-172 609.0 522 61.5
Psat3g128200 Pisum sativum HOM05D003907 ORTHO05D004819 3.5e-172 609.0 522 62.1
MD12G1166000 Malus domestica HOM05D003907 ORTHO05D004819 4.5e-172 608.6 522 61.3
MSTRG.10218 Avicennia marina HOM05D003907 ORTHO05D004819 5.9e-172 608.2 511 61.4
Dinv23105 Davidia involucrata HOM05D003907 ORTHO05D004819 7.7e-172 607.8 522 61.5
Sopen09g001280 Solanum pennellii HOM05D003907 ORTHO05D004819 7.7e-172 607.8 522 60.3
Solyc09g005310.3 Solanum lycopersicum HOM05D003907 ORTHO05D004819 1.0e-171 607.4 522 60.3
Aqoxy4G02574 Aquilegia oxysepala HOM05D003907 ORTHO05D004819 1.3e-171 607.1 520 60.0
CSS0040367 Camellia sinensis var. sinensis HOM05D003907 ORTHO05D004819 1.3e-171 607.1 522 60.7
CiPaw.09G209200 Carya illinoinensis HOM05D003907 ORTHO05D004819 1.3e-171 607.1 520 61.3
Lj2A75G35 Lonicera japonica HOM05D003907 ORTHO05D004819 1.3e-171 607.1 521 60.8
Duzib106G0096 Durio zibethinus HOM05D003907 ORTHO05D004819 2.2e-171 606.3 522 60.7
PSO801G0155 Papaver somniferum HOM05D003907 ORTHO05D004819 2.9e-171 605.9 519 60.9
Manes.09G104800 Manihot esculenta HOM05D003907 ORTHO05D004819 3.8e-171 605.5 522 61.3
PSO339G6136 Papaver somniferum HOM05D003907 ORTHO05D004819 3.8e-171 605.5 519 60.9
SGA_v2.0_scaffold110G31215 Striga asiatica HOM05D003907 ORTHO05D004819 3.8e-171 605.5 522 61.1
TAR633G0126 Trochodendron aralioides HOM05D003907 ORTHO05D004819 3.8e-171 605.5 522 60.5
Thecc.05G016000 Theobroma cacao HOM05D003907 ORTHO05D004819 5.0e-171 605.1 522 60.7
Sed0026155 Sechium edule HOM05D003907 ORTHO05D004819 6.5e-171 604.7 522 60.3
THA.LOC104823300 Tarenaya hassleriana HOM05D003907 ORTHO05D004819 6.5e-171 604.7 511 61.6
ATR0618G011 Amborella trichopoda HOM05D003907 ORTHO05D004819 8.5e-171 604.4 514 60.9
Migut.L02013 Erythranthe guttata HOM05D003907 ORTHO05D004819 8.5e-171 604.4 511 61.3
MD04G1152700 Malus domestica HOM05D003907 ORTHO05D004819 1.1e-170 604.0 522 60.7
Ah.12g058610 Amaranthus hybridus HOM05D003907 ORTHO05D004819 1.5e-170 603.6 522 60.2
Ciclev10011517m.g Citrus clementina HOM05D003907 ORTHO05D004819 1.5e-170 603.6 511 61.6
Sed0027660 Sechium edule HOM05D003907 ORTHO05D004819 1.5e-170 603.6 522 60.2
TAR636G2600 Trochodendron aralioides HOM05D003907 ORTHO05D004819 1.5e-170 603.6 522 59.8
ClCG04G006990 Citrullus lanatus HOM05D003907 ORTHO05D004819 1.9e-170 603.2 522 60.7
CsaV3_4G026280 Cucumis sativus L. HOM05D003907 ORTHO05D004819 1.9e-170 603.2 511 61.3
Nitab4.5_0000511g0010 Nicotiana tabacum HOM05D003907 ORTHO05D004819 2.5e-170 602.8 522 59.8
CAN.G5.12 Capsicum annuum HOM05D003907 ORTHO05D004819 3.2e-170 602.4 522 59.8
Thhalv10013023m.g Eutrema salsugineum HOM05D003907 ORTHO05D004819 3.2e-170 602.4 520 60.4
Atru.chr8.2242 Acer truncatum HOM05D003907 ORTHO05D004819 5.5e-170 601.7 522 59.8
Medtr7g068440 Medicago truncatula HOM05D003907 ORTHO05D004819 5.5e-170 601.7 520 61.5
Carub.0006s0037 Capsella rubella HOM05D003907 ORTHO05D004819 7.2e-170 601.3 520 60.2
PGSC0003DMG400023084 Solanum tuberosum HOM05D003907 ORTHO05D004819 7.2e-170 601.3 522 59.4
EL10Ac5g12561 Beta vulgaris HOM05D003907 ORTHO05D004819 9.4e-170 600.9 522 60.7
Nitab4.5_0000335g0010 Nicotiana tabacum HOM05D003907 ORTHO05D004819 9.4e-170 600.9 522 59.6
QL07p019755 Quercus lobata HOM05D003907 ORTHO05D004819 9.4e-170 600.9 520 60.6
AL6G10610 Arabidopsis lyrata HOM05D003907 ORTHO05D004819 1.2e-169 600.5 520 60.0
AT5G01460 Arabidopsis thaliana HOM05D003907 ORTHO05D004819 1.2e-169 600.5 520 60.2
CARHR211830 Cardamine hirsuta HOM05D003907 ORTHO05D004819 1.6e-169 600.1 520 60.4
CSS0038026 Camellia sinensis var. sinensis HOM05D003907 ORTHO05D004819 2.1e-169 599.7 520 61.0
Manes.09G105700 Manihot esculenta HOM05D003907 ORTHO05D004819 2.1e-169 599.7 522 60.3
AUR62010458 Chenopodium quinoa HOM05D003907 ORTHO05D004819 2.7e-169 599.4 511 60.7
unitig_8.g3229 Utricularia gibba HOM05D003907 ORTHO05D004819 2.7e-169 599.4 511 60.9
C05p58960 Brassica napus HOM05D003907 ORTHO05D004819 8.0e-169 597.8 522 59.8
Carub.0003s0804 Capsella rubella HOM05D003907 ORTHO05D004819 8.0e-169 597.8 522 60.0
DCAR_018702 Daucus carota HOM05D003907 ORTHO05D004819 8.0e-169 597.8 522 58.8
BolC5t34549H Brassica oleracea HOM05D003907 ORTHO05D004819 1.0e-168 597.4 522 59.6
Sp6g40750 Schrenkiella parvula HOM05D003907 ORTHO05D004819 1.0e-168 597.4 511 60.9
AL3G19930 Arabidopsis lyrata HOM05D003907 ORTHO05D004819 1.4e-168 597.0 522 60.0
Migut.J00170 Erythranthe guttata HOM05D003907 ORTHO05D004819 1.4e-168 597.0 520 59.8
BraSC256t45932Z Brassica rapa HOM05D003907 ORTHO05D004819 1.8e-168 596.7 522 59.6
Lalb_Chr01g0023081 Lupinus albus HOM05D003907 ORTHO05D004819 2.3e-168 596.3 520 60.6
SGA_v2.0_scaffold240G44095 Striga asiatica HOM05D003907 ORTHO05D004819 2.3e-168 596.3 512 61.9
TPR.G13353 Trifolium pratense HOM05D003907 ORTHO05D004819 2.3e-168 596.3 511 60.9
CARHR083260 Cardamine hirsuta HOM05D003907 ORTHO05D004819 6.8e-168 594.7 522 59.6
RcHm_v2.0_Chr3g0463141 Rosa chinensis HOM05D003907 ORTHO05D004819 8.8e-168 594.3 522 59.6
Thhalv10020541m.g Eutrema salsugineum HOM05D003907 ORTHO05D004819 1.2e-167 594.0 522 60.3
FAN09G4250 Fragaria x ananassa HOM05D003907 ORTHO05D004819 1.2e-167 594.0 522 59.8
AT3G08930 Arabidopsis thaliana HOM05D003907 ORTHO05D004819 1.5e-167 593.6 511 60.5
BcaB04g18559 Brassica carinata HOM05D003907 ORTHO05D004819 1.5e-167 593.6 522 59.4
Haze_21003 Corylus avellana HOM05D003907 ORTHO05D004819 1.5e-167 593.6 541 59.3
Phvul.008G104400 Phaseolus vulgaris HOM05D003907 ORTHO05D004819 1.5e-167 593.6 520 61.5
FAN02G2014 Fragaria x ananassa HOM05D003907 ORTHO05D004819 2.0e-167 593.2 522 59.8
Zm00001eb269470 Zea mays HOM05D003907 ORTHO05D004819 3.4e-167 592.4 522 60.0
Sp3g07320 Schrenkiella parvula HOM05D003907 ORTHO05D004819 4.4e-167 592.0 522 59.6
vmacro11169 Vaccinium macrocarpon HOM05D003907 ORTHO05D004819 9.8e-167 590.9 539 57.9
PGR004G0735 Punica granatum HOM05D003907 ORTHO05D004819 2.2e-166 589.7 511 60.5
FvH4_6g11450 Fragaria vesca HOM05D003907 ORTHO05D004819 2.8e-166 589.3 522 59.4
FAN14G1433 Fragaria x ananassa HOM05D003907 ORTHO05D004819 2.8e-166 589.3 522 59.4
FAN14G5854 Fragaria x ananassa HOM05D003907 ORTHO05D004819 2.8e-166 589.3 522 59.4
Lj3A953T53 Lonicera japonica HOM05D003907 ORTHO05D004819 4.8e-166 588.6 534 58.6
Ca_20232_v3 Cicer arietinum L. HOM05D003907 ORTHO05D004819 8.3e-166 587.8 520 60.2
Rhsim03G0144200 Rhododendron simsii HOM05D003907 ORTHO05D004819 1.1e-165 587.4 517 60.0
Hund14296 Selenicereus undatus HOM05D003907 ORTHO05D004819 1.4e-165 587.0 522 58.6
Lj3g0019592 Lotus japonicus HOM05D003907 ORTHO05D004819 1.8e-165 586.6 520 60.0
Glyma.03G058100 Glycine max HOM05D003907 ORTHO05D004819 4.1e-165 585.5 522 60.0
SalBow5G2920 Salvia bowleyana HOM05D003907 ORTHO05D004819 4.1e-165 585.5 520 58.1
CiPaw.10G156600 Carya illinoinensis HOM05D003907 ORTHO05D004819 9.1e-165 584.3 520 59.8
A05p39920 Brassica napus HOM05D003907 ORTHO05D004819 5.9e-164 581.6 506 59.9
Glyma.01G122100 Glycine max HOM05D003907 ORTHO05D004819 5.9e-164 581.6 520 59.8
ECA247G1720 Erigeron canadensis HOM05D003907 ORTHO05D004819 1.7e-163 580.1 493 61.9
Eucgr.B02811 Eucalyptus grandis HOM05D003907 ORTHO05D004819 1.7e-163 580.1 512 59.6
Aa31LG1G23090 Aethionema arabicum HOM05D003907 ORTHO05D004819 2.9e-163 579.3 506 59.9
Lalb_Chr03g0043281 Lupinus albus HOM05D003907 ORTHO05D004819 5.0e-163 578.6 520 59.4
A03p36270 Brassica napus HOM05D003907 ORTHO05D004819 3.2e-162 575.9 522 58.4
C03p43910 Brassica napus HOM05D003907 ORTHO05D004819 3.2e-162 575.9 522 58.4
BolC3t16659H Brassica oleracea HOM05D003907 ORTHO05D004819 4.2e-162 575.5 522 58.2
VMungo0331G1185 Vigna mungo HOM05D003907 ORTHO05D004819 4.2e-162 575.5 506 61.3
FAN05G4390 Fragaria x ananassa HOM05D003907 ORTHO05D004819 5.5e-162 575.1 506 59.1
BraA03t12798Z Brassica rapa HOM05D003907 ORTHO05D004819 9.4e-162 574.3 522 58.2
Zm00001eb378570 Zea mays HOM05D003907 ORTHO05D004819 6.1e-161 571.6 514 58.8
SMO367G0485 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 8.8e-160 567.8 514 57.8
CDE05G1648 Ceratophyllum demersum HOM05D003907 ORTHO05D004819 3.4e-159 565.8 516 57.8
AUR62030453 Chenopodium quinoa HOM05D003907 ORTHO05D004819 7.5e-159 564.7 511 57.5
CDE05G1838 Ceratophyllum demersum HOM05D003907 ORTHO05D004819 8.3e-158 561.2 522 56.9
Oeu064499.2 Olea europaea HOM05D003907 ORTHO05D004819 1.8e-157 560.1 551 55.2
COL.COLO4_14536 Corchorus olitorius HOM05D003907 ORTHO05D004819 3.1e-157 559.3 484 61.0
Sabra06G0077000 Salix brachista HOM05D003907 ORTHO05D004819 4.1e-157 558.9 568 55.1
Ca_07641_v3 Cicer arietinum L. HOM05D003907 ORTHO05D004819 4.7e-153 545.4 538 56.5
Ca_30080_v3 Cicer arietinum L. HOM05D003907 ORTHO05D004819 4.7e-153 545.4 538 56.5
Lalb_Chr19g0124541 Lupinus albus HOM05D003907 ORTHO05D004819 4.7e-153 545.4 520 57.1
Peaxi162Scf00141g01026 Petunia axillaris HOM05D003907 ORTHO05D004819 3.7e-150 535.8 522 55.4
Phvul.010G001200 Phaseolus vulgaris HOM05D003907 ORTHO05D004819 3.2e-149 532.7 520 56.7
Pp3c13_15020 Physcomitrium patens HOM05D003907 ORTHO05D004819 3.5e-148 529.3 515 53.0
Pp3c23_4110 Physcomitrium patens HOM05D003907 ORTHO05D004819 1.0e-147 527.7 511 53.4
SMO146G0061 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 8.0e-145 518.1 503 51.7
BcaC05g29627 Brassica carinata HOM05D003907 ORTHO05D004819 2.0e-143 513.5 454 59.3
MELO3C003291.2 Cucumis melo HOM05D003907 ORTHO05D004819 1.2e-140 504.2 484 57.6
Duzib128G0387 Durio zibethinus HOM05D003907 ORTHO05D004819 1.5e-135 487.3 522 53.4
Lj3g0026649 Lotus japonicus HOM05D003907 ORTHO05D004819 2.4e-133 479.9 425 59.8
Duzib093G1828 Durio zibethinus HOM05D003907 ORTHO05D004819 2.1e-132 476.9 511 51.9
Actinidia20733 Actinidia chinensis HOM05D003907 ORTHO05D004819 2.6e-127 459.9 520 50.2
PRCOL_00002088 Prasinoderma coloniale HOM05D003907 ORTHO05D004819 4.7e-121 439.1 525 46.9
Cpa.g.sc11.141 Carica papaya HOM05D003907 ORTHO05D004819 2.2e-118 430.3 387 57.4
unitig_22.g6592 Utricularia gibba HOM05D003907 ORTHO05D004819 3.8e-118 429.5 471 50.1
HPP92_003698 Vanilla planifolia HOM05D003907 ORTHO05D004819 7.1e-117 425.2 391 58.1
AagrBONN_evm.TU.Sc2ySwM_368.1024 Anthoceros agrestis HOM05D003907 ORTHO05D004819 2.3e-115 420.2 387 55.6
Sc01g0006450 Simmondsia chinensis HOM05D003907 ORTHO05D004819 4.4e-111 406.0 379 55.7
DCAR_015417 Daucus carota HOM05D003907 ORTHO05D004819 5.8e-111 405.6 504 48.4
MCO03G500 Micromonas commoda HOM05D003907 ORTHO05D004819 3.8e-110 402.9 500 44.8
TPR.G7076 Trifolium pratense HOM05D003907 ORTHO05D004819 7.1e-109 398.7 376 57.4
Ah.02g115900 Amaranthus hybridus HOM05D003907 ORTHO05D004819 1.2e-108 397.9 359 56.5
Hma1.2p1_0362F.1_g136250 Hydrangea macrophylla HOM05D003907 ORTHO05D004819 3.9e-107 392.9 324 61.1
Glyma.16G099300 Glycine max HOM05D003907 ORTHO05D004819 7.6e-103 378.6 300 65.3
Cre01.g023400 Chlamydomonas reinhardtii HOM05D003907 ORTHO05D004819 7.9e-100 368.6 522 39.3
Actinidia11586 Actinidia chinensis HOM05D003907 ORTHO05D004819 1.5e-98 364.4 471 46.5
Actinidia27153 Actinidia chinensis HOM05D003907 ORTHO05D004819 1.8e-96 357.5 284 63.0
SMO015G0001 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 5.1e-91 339.3 391 47.1
Actinidia29101 Actinidia chinensis HOM05D003907 ORTHO05D004819 4.1e-80 303.1 266 62.8
Actinidia29102 Actinidia chinensis HOM05D003907 ORTHO05D004819 1.8e-75 287.7 245 60.0
SEGI_00285 Sequoiadendron giganteum HOM05D003907 ORTHO05D004819 3.9e-75 286.6 293 55.3
SMO173G0027 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 7.5e-58 229.2 348 39.1
CSS0040994 Camellia sinensis var. sinensis HOM05D003907 ORTHO05D004819 1.2e-47 195.3 212 51.4
SMO173G0021 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 1.7e-46 191.4 324 36.1
SMO023G0001 Selaginella moellendorffii HOM05D003907 ORTHO05D376622 1.1e-45 188.7 377 35.5
SEGI_07345 Sequoiadendron giganteum HOM05D003907 ORTHO05D004819 3.6e-44 183.7 141 65.2
TPR.G8133 Trifolium pratense HOM05D003907 ORTHO05D038338 4.0e-43 180.3 143 65.0
SMO146G0194 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 4.3e-37 160.2 204 44.1
ATR0759G042 Amborella trichopoda HOM05D003907 ORTHO05D038338 7.3e-37 159.5 114 67.5
SMO173G0002 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 3.0e-35 154.1 182 45.6
ATR0759G047 Amborella trichopoda HOM05D003907 ORTHO05D004819 1.5e-29 135.2 182 47.8
Ca_20230_v3 Cicer arietinum L. HOM05D003907 ORTHO05D148210 1.7e-25 121.7 108 61.1
SMO146G0334 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 4.9e-25 120.2 118 48.3
BcaC01g04205 Brassica carinata HOM05D003907 ORTHO05D004819 5.6e-21 106.7 95 60.0
VMungo1080G1595 Vigna mungo HOM05D003907 ORTHO05D004819 1.8e-11 75.1 111 45.0
SMO173G0093 Selaginella moellendorffii HOM05D003907 ORTHO05D378519 1.7e-09 68.6 67 49.3


User provided reference genes

Program Settings