Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g40148 Chara braunii HOM05D004853 ORTHO05D005865 0.0e+00 1352.0 687 100.0
CBR_g23403 Chara braunii HOM05D004853 ORTHO05D005865 2.1e-153 547.0 322 90.4
SEGI_13565 Sequoiadendron giganteum HOM05D004853 ORTHO05D005865 7.5e-135 485.3 587 47.4
TAR623G1093 Trochodendron aralioides HOM05D004853 ORTHO05D005865 2.4e-133 480.3 586 47.8
TAR376G0972 Trochodendron aralioides HOM05D004853 ORTHO05D005865 1.6e-132 477.6 584 47.1
MBI19_g34091_MAGBIO Magnolia biondii HOM05D004853 ORTHO05D005865 5.1e-131 472.6 583 47.5
Aqoxy1G00113 Aquilegia oxysepala HOM05D004853 ORTHO05D005865 6.6e-131 472.2 586 45.2
Nn7g37081 Nelumbo nucifera HOM05D004853 ORTHO05D005865 6.6e-131 472.2 581 46.6
QL09p051756 Quercus lobata HOM05D004853 ORTHO05D005865 3.3e-130 469.9 582 46.9
ClCG09G008800 Citrullus lanatus HOM05D004853 ORTHO05D005865 5.6e-130 469.2 582 47.1
Potri.015G090600 Populus trichocarpa HOM05D004853 ORTHO05D005865 5.6e-130 469.2 581 48.7
QL09p052469 Quercus lobata HOM05D004853 ORTHO05D005865 5.6e-130 469.2 582 46.9
MELO3C021058.2 Cucumis melo HOM05D004853 ORTHO05D005865 9.5e-130 468.4 581 47.5
Haze_15035 Corylus avellana HOM05D004853 ORTHO05D005865 1.2e-129 468.0 583 47.2
Cfa004377 Carpinus fangiana HOM05D004853 ORTHO05D005865 2.8e-129 466.8 583 47.2
CDE07G1728 Ceratophyllum demersum HOM05D004853 ORTHO05D005865 2.8e-129 466.8 582 46.2
Aa31LG8G11930 Aethionema arabicum HOM05D004853 ORTHO05D005865 6.2e-129 465.7 598 46.3
CsaV3_7G026150 Cucumis sativus L. HOM05D004853 ORTHO05D005865 6.2e-129 465.7 581 47.0
PSO384G4190 Papaver somniferum HOM05D004853 ORTHO05D005865 8.1e-129 465.3 574 45.8
Manes.13G048900 Manihot esculenta HOM05D004853 ORTHO05D005865 3.1e-128 463.4 581 47.5
Sp3g22680 Schrenkiella parvula HOM05D004853 ORTHO05D005865 3.1e-128 463.4 593 46.4
Thecc.01G221500 Theobroma cacao HOM05D004853 ORTHO05D005865 3.1e-128 463.4 590 46.4
CiPaw.02G023000 Carya illinoinensis HOM05D004853 ORTHO05D005865 5.2e-128 462.6 588 45.9
Ciclev10019411m.g Citrus clementina HOM05D004853 ORTHO05D005865 5.2e-128 462.6 586 45.7
Sed0013559 Sechium edule HOM05D004853 ORTHO05D005865 6.8e-128 462.2 581 46.8
CSS0034871 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 2.6e-127 460.3 590 46.8
Cpa.g.sc43.113 Carica papaya HOM05D004853 ORTHO05D005865 2.6e-127 460.3 607 45.5
Sc17g0002190 Simmondsia chinensis HOM05D004853 ORTHO05D005865 2.6e-127 460.3 582 46.6
MD10G1160500 Malus domestica HOM05D004853 ORTHO05D005865 4.4e-127 459.5 588 47.8
Prupe.8G199700 Prunus persica HOM05D004853 ORTHO05D005865 4.4e-127 459.5 587 47.0
CANSAT01G2121 Cannabis sativa HOM05D004853 ORTHO05D005865 5.8e-127 459.1 584 46.6
FAN27G1226 Fragaria x ananassa HOM05D004853 ORTHO05D005865 5.8e-127 459.1 592 45.8
EL10Ac7g17891 Beta vulgaris HOM05D004853 ORTHO05D005865 7.6e-127 458.8 579 45.6
BcaB08g34434 Brassica carinata HOM05D004853 ORTHO05D005865 7.6e-127 458.8 592 46.3
FvH4_2g18640 Fragaria vesca HOM05D004853 ORTHO05D005865 7.6e-127 458.8 592 45.6
FAN24G1506 Fragaria x ananassa HOM05D004853 ORTHO05D005865 7.6e-127 458.8 592 45.8
FAN15G3437 Fragaria x ananassa HOM05D004853 ORTHO05D005865 9.9e-127 458.4 592 45.6
BcaC06g35779 Brassica carinata HOM05D004853 ORTHO05D005865 1.3e-126 458.0 590 46.1
BolC7t41562H Brassica oleracea HOM05D004853 ORTHO05D005865 1.3e-126 458.0 590 46.1
Thhalv10002454m.g Eutrema salsugineum HOM05D004853 ORTHO05D005865 1.3e-126 458.0 589 45.5
Sabra15G0112700 Salix brachista HOM05D004853 ORTHO05D005865 1.3e-126 458.0 581 47.7
THA.LOC104808789 Tarenaya hassleriana HOM05D004853 ORTHO05D005865 1.3e-126 458.0 595 46.2
BraA03t13534Z Brassica rapa HOM05D004853 ORTHO05D005865 1.7e-126 457.6 589 46.3
MD05G1172300 Malus domestica HOM05D004853 ORTHO05D005865 1.7e-126 457.6 588 47.8
Gohir.D07G206000 Gossypium hirsutum HOM05D004853 ORTHO05D005865 2.2e-126 457.2 587 46.0
RcHm_v2.0_Chr6g0284201 Rosa chinensis HOM05D004853 ORTHO05D005865 2.2e-126 457.2 592 46.5
Eucgr.H00778 Eucalyptus grandis HOM05D004853 ORTHO05D005865 4.9e-126 456.1 584 46.7
Gorai.001G232300 Gossypium raimondii HOM05D004853 ORTHO05D005865 4.9e-126 456.1 587 46.0
CARHR101430 Cardamine hirsuta HOM05D004853 ORTHO05D005865 6.4e-126 455.7 589 45.3
CiPaw.01G049500 Carya illinoinensis HOM05D004853 ORTHO05D005865 8.4e-126 455.3 580 45.9
BcaB06g26724 Brassica carinata HOM05D004853 ORTHO05D005865 1.1e-125 454.9 592 46.3
Duzib133G1132 Durio zibethinus HOM05D004853 ORTHO05D005865 1.9e-125 454.1 583 45.8
Gohir.A07G199600 Gossypium hirsutum HOM05D004853 ORTHO05D005865 1.9e-125 454.1 592 45.8
TWI36G0697 Tripterygium wilfordii HOM05D004853 ORTHO05D005865 4.1e-125 453.0 586 45.4
AUR62043704 Chenopodium quinoa HOM05D004853 ORTHO05D005865 7.1e-125 452.2 581 42.7
Dinv12655 Davidia involucrata HOM05D004853 ORTHO05D005865 1.2e-124 451.4 588 45.7
BcaC01g03244 Brassica carinata HOM05D004853 ORTHO05D005865 1.6e-124 451.1 588 46.4
C03p54420 Brassica napus HOM05D004853 ORTHO05D005865 1.6e-124 451.1 588 46.4
BolC3t17728H Brassica oleracea HOM05D004853 ORTHO05D005865 1.6e-124 451.1 588 46.4
AUR62038821 Chenopodium quinoa HOM05D004853 ORTHO05D005865 1.6e-124 451.1 581 42.5
Aa31LG9G4920 Aethionema arabicum HOM05D004853 ORTHO05D005865 2.1e-124 450.7 599 45.9
Gorai.007G156000 Gossypium raimondii HOM05D004853 ORTHO05D005865 2.1e-124 450.7 590 44.9
Actinidia09471 Actinidia chinensis HOM05D004853 ORTHO05D005865 4.6e-124 449.5 589 46.2
Duzib138G1868 Durio zibethinus HOM05D004853 ORTHO05D005865 4.6e-124 449.5 587 45.0
COL.COLO4_15628 Corchorus olitorius HOM05D004853 ORTHO05D005865 7.8e-124 448.7 586 45.6
Lj3C839T9 Lonicera japonica HOM05D004853 ORTHO05D005865 7.8e-124 448.7 588 45.2
AL3G40790 Arabidopsis lyrata HOM05D004853 ORTHO05D005865 1.3e-123 448.0 593 45.2
Cc01_g16780 Coffea canephora HOM05D004853 ORTHO05D005865 1.7e-123 447.6 589 45.2
Actinidia23713 Actinidia chinensis HOM05D004853 ORTHO05D005865 3.9e-123 446.4 589 45.8
Atru.chr6.1420 Acer truncatum HOM05D004853 ORTHO05D005865 5.1e-123 446.0 585 45.0
Hma1.2p1_0226F.1_g095440 Hydrangea macrophylla HOM05D004853 ORTHO05D005865 6.6e-123 445.7 595 45.5
Hma1.2p1_2668F.1_g326580 Hydrangea macrophylla HOM05D004853 ORTHO05D005865 6.6e-123 445.7 595 45.5
A07p07260 Brassica napus HOM05D004853 ORTHO05D005865 8.6e-123 445.3 596 43.1
BraA07t28514Z Brassica rapa HOM05D004853 ORTHO05D005865 1.1e-122 444.9 596 43.1
AT3G25100 Arabidopsis thaliana HOM05D004853 ORTHO05D005865 1.5e-122 444.5 591 45.3
MSTRG.18839 Avicennia marina HOM05D004853 ORTHO05D005865 1.5e-122 444.5 588 45.7
SalBow6G4054 Salvia bowleyana HOM05D004853 ORTHO05D005865 1.5e-122 444.5 588 45.2
Carub.0003s2543 Capsella rubella HOM05D004853 ORTHO05D005865 1.2e-121 441.4 595 45.2
Lsat_1_v5_gn_8_89600 Lactuca sativa HOM05D004853 ORTHO05D005865 4.7e-121 439.5 590 44.4
DCAR_004725 Daucus carota HOM05D004853 ORTHO05D005865 1.4e-120 438.0 591 45.2
Phvul.008G130700 Phaseolus vulgaris HOM05D004853 ORTHO05D005865 1.8e-120 437.6 583 44.9
Peaxi162Scf00238g00032 Petunia axillaris HOM05D004853 ORTHO05D005865 4.0e-120 436.4 588 44.6
Oeu037767.1 Olea europaea HOM05D004853 ORTHO05D005865 2.6e-119 433.7 590 43.9
C07p10970 Brassica napus HOM05D004853 ORTHO05D005865 3.4e-119 433.3 555 44.5
Lalb_Chr03g0041521 Lupinus albus HOM05D004853 ORTHO05D005865 3.4e-119 433.3 582 44.7
Pp3c23_19980 Physcomitrium patens HOM05D004853 ORTHO05D005865 4.4e-119 433.0 599 43.6
Nitab4.5_0007437g0010 Nicotiana tabacum HOM05D004853 ORTHO05D005865 7.6e-119 432.2 590 43.6
SGA_v2.0_scaffold18G08333 Striga asiatica HOM05D004853 ORTHO05D005865 7.6e-119 432.2 595 44.2
Nitab4.5_0000045g0440 Nicotiana tabacum HOM05D004853 ORTHO05D005865 1.3e-118 431.4 588 44.0
PGSC0003DMG400027946 Solanum tuberosum HOM05D004853 ORTHO05D005865 1.3e-118 431.4 588 44.4
Solyc09g059440.1 Solanum lycopersicum HOM05D004853 ORTHO05D005865 2.2e-118 430.6 590 43.9
Sopen09g022590 Solanum pennellii HOM05D004853 ORTHO05D005865 3.8e-118 429.9 588 44.2
unitig_899.g15017 Utricularia gibba HOM05D004853 ORTHO05D005865 3.8e-118 429.9 601 44.6
Os12g0124700 Oryza sativa ssp. japonica HOM05D004853 ORTHO05D005865 6.4e-118 429.1 590 43.9
Os11g0128400 Oryza sativa ssp. japonica HOM05D004853 ORTHO05D005865 8.4e-118 428.7 593 44.4
SMO307G0064 Selaginella moellendorffii HOM05D004853 ORTHO05D005865 8.4e-118 428.7 595 45.2
CAN.G128.1 Capsicum annuum HOM05D004853 ORTHO05D005865 1.4e-117 427.9 588 43.5
Rhsim09G0044900 Rhododendron simsii HOM05D004853 ORTHO05D005865 1.4e-117 427.9 590 43.9
Ah.15g093470 Amaranthus hybridus HOM05D004853 ORTHO05D005865 3.2e-117 426.8 575 43.8
A03p44030 Brassica napus HOM05D004853 ORTHO05D005865 5.4e-117 426.0 547 47.0
Mapoly0045s0042 Marchantia polymorpha HOM05D004853 ORTHO05D005865 2.1e-116 424.1 588 42.5
Glyma.08G349400 Glycine max HOM05D004853 ORTHO05D005865 6.0e-116 422.5 582 43.5
Ca_06554_v3 Cicer arietinum L. HOM05D004853 ORTHO05D005865 1.3e-115 421.4 602 43.0
VMungo1383G0658 Vigna mungo HOM05D004853 ORTHO05D005865 1.7e-115 421.0 587 44.1
Medtr7g056153 Medicago truncatula HOM05D004853 ORTHO05D005865 3.0e-115 420.2 592 44.1
CDE04G0889 Ceratophyllum demersum HOM05D004853 ORTHO05D005865 6.6e-115 419.1 585 43.8
unitig_736.g22343 Utricularia gibba HOM05D004853 ORTHO05D005865 6.6e-115 419.1 600 42.7
Psat3g148200 Pisum sativum HOM05D004853 ORTHO05D005865 1.1e-114 418.3 588 43.9
Zm00001eb405460 Zea mays HOM05D004853 ORTHO05D005865 1.5e-114 417.9 602 44.5
HanXRQChr10g0288791 Helianthus annuus HOM05D004853 ORTHO05D005865 3.3e-114 416.8 587 42.6
Glyma.18G167000 Glycine max HOM05D004853 ORTHO05D005865 7.3e-114 415.6 584 43.5
HanXRQChr14g0439971 Helianthus annuus HOM05D004853 ORTHO05D005865 2.1e-113 414.1 588 42.5
Gohir.D07G205900 Gossypium hirsutum HOM05D004853 ORTHO05D005865 5.8e-111 406.0 583 42.9
ECA236G0997 Erigeron canadensis HOM05D004853 ORTHO05D005865 2.2e-110 404.1 588 42.2
Migut.D02501 Erythranthe guttata HOM05D004853 ORTHO05D005865 5.4e-109 399.4 590 43.1
ATR0068G062 Amborella trichopoda HOM05D004853 ORTHO05D005865 9.3e-109 398.7 586 43.3
Lj1g0018468 Lotus japonicus HOM05D004853 ORTHO05D005865 7.9e-108 395.6 596 40.8
AagrBONN_evm.TU.Sc2ySwM_117.731 Anthoceros agrestis HOM05D004853 ORTHO05D005865 5.1e-107 392.9 605 39.2
GSVIVG01000797001 Vitis vinifera HOM05D004853 ORTHO05D005865 8.7e-107 392.1 580 39.5
CAN.G257.5 Capsicum annuum HOM05D004853 ORTHO05D005865 1.4e-104 384.8 522 44.6
TPR.G6418 Trifolium pratense HOM05D004853 ORTHO05D005865 3.4e-103 380.2 622 40.2
Gohir.A11G139300 Gossypium hirsutum HOM05D004853 ORTHO05D005865 1.5e-98 364.8 588 40.5
Gohir.D11G145500 Gossypium hirsutum HOM05D004853 ORTHO05D005865 1.5e-98 364.8 479 45.5
DCAR_004733 Daucus carota HOM05D004853 ORTHO05D005865 4.8e-97 359.8 589 41.4
AL706U10010 Arabidopsis lyrata HOM05D004853 ORTHO05D005865 6.5e-94 349.4 399 48.9
Gorai.001G232100 Gossypium raimondii HOM05D004853 ORTHO05D005865 6.5e-94 349.4 566 39.4
CSS0045377 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 6.7e-91 339.3 517 42.2
Dinv19180 Davidia involucrata HOM05D004853 ORTHO05D005865 1.3e-83 315.1 588 38.1
MCO03G169 Micromonas commoda HOM05D004853 ORTHO05D005865 3.8e-78 297.0 617 35.8
Gohir.A07G199500 Gossypium hirsutum HOM05D004853 ORTHO05D005865 6.3e-73 279.6 582 35.6
PRCOL_00002078 Prasinoderma coloniale HOM05D004853 ORTHO05D005865 8.5e-70 269.2 606 32.5
CBR_g23402 Chara braunii HOM05D004853 ORTHO05D005865 2.2e-65 254.6 125 98.4
CAN.G186.62 Capsicum annuum HOM05D004853 ORTHO05D005865 1.6e-55 221.9 208 54.8
arahy.Tifrunner.gnm1.ann1.23GIHT Arachis hypogaea HOM05D004853 ORTHO05D005865 1.9e-53 214.9 620 30.3
CSS0009877 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 4.0e-43 180.6 225 45.8
Sabra02G0118100 Salix brachista HOM05D004853 ORTHO05D005865 1.8e-35 155.2 139 55.4
HPP92_007506 Vanilla planifolia HOM05D004853 ORTHO05D005865 6.4e-33 146.7 229 41.9
Cre06.g270250 Chlamydomonas reinhardtii HOM05D004853 ORTHO05D005865 1.6e-28 132.1 608 26.5
Zm00001eb163660 Zea mays HOM05D004853 ORTHO05D005865 2.9e-25 121.3 98 58.2
CSS0030898 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 1.6e-23 115.5 247 32.8
ECA233G3738 Erigeron canadensis HOM05D004853 ORTHO05D005865 4.3e-13 80.9 80 50.0
Ah.03g146210 Amaranthus hybridus HOM05D004853 ORTHO05D005865 1.2e-12 79.3 119 42.0
AUR62016553 Chenopodium quinoa HOM05D004853 ORTHO05D005865 8.6e-06 56.6 42 59.5


User provided reference genes

Program Settings