Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g4009 Chara braunii HOM05D005096 ORTHO05D006566 0.0e+00 1728.4 989 100.0
AagrBONN_evm.TU.Sc2ySwM_228.961 Anthoceros agrestis HOM05D005096 ORTHO05D006566 5.7e-152 542.7 981 39.7
Mapoly0002s0267 Marchantia polymorpha HOM05D005096 ORTHO05D006566 6.3e-151 539.3 986 39.4
Pp3c3_25850 Physcomitrium patens HOM05D005096 ORTHO05D006566 4.9e-143 513.1 976 38.4
Pp3c10_17390 Physcomitrium patens HOM05D005096 ORTHO05D006566 5.0e-140 503.1 976 38.1
SMO147G0152 Selaginella moellendorffii HOM05D005096 ORTHO05D006566 1.7e-111 408.3 974 33.3
GSVIVG01011085001 Vitis vinifera HOM05D005096 ORTHO05D006566 1.1e-107 395.6 951 33.9
Atru.chr5.1434 Acer truncatum HOM05D005096 ORTHO05D006566 4.3e-107 393.7 962 33.3
Actinidia09139 Actinidia chinensis HOM05D005096 ORTHO05D006566 3.6e-106 390.6 951 33.0
ATR0626G051 Amborella trichopoda HOM05D005096 ORTHO05D006566 4.8e-106 390.2 954 33.5
Dinv32937 Davidia involucrata HOM05D005096 ORTHO05D006566 4.8e-106 390.2 977 31.9
Cfa006136 Carpinus fangiana HOM05D005096 ORTHO05D006566 6.2e-106 389.8 953 33.5
MD11G1286100 Malus domestica HOM05D005096 ORTHO05D006566 8.1e-106 389.4 953 33.4
Duzib138G0773 Durio zibethinus HOM05D005096 ORTHO05D006566 1.4e-105 388.7 957 33.3
FAN20G2556 Fragaria x ananassa HOM05D005096 ORTHO05D006566 1.8e-105 388.3 949 32.5
CSS0045500 Camellia sinensis var. sinensis HOM05D005096 ORTHO05D006566 2.0e-104 384.8 955 32.9
FvH4_2g23600 Fragaria vesca HOM05D005096 ORTHO05D006566 2.0e-104 384.8 952 32.2
FAN27G2515 Fragaria x ananassa HOM05D005096 ORTHO05D006566 2.0e-104 384.8 949 32.3
TAR633G0362 Trochodendron aralioides HOM05D005096 ORTHO05D006566 2.6e-104 384.4 945 34.4
arahy.Tifrunner.gnm1.ann1.2R7T4K Arachis hypogaea HOM05D005096 ORTHO05D006566 3.4e-104 384.0 957 32.3
Prupe.8G241300 Prunus persica HOM05D005096 ORTHO05D006566 3.4e-104 384.0 956 33.4
THA.LOC104801235 Tarenaya hassleriana HOM05D005096 ORTHO05D006566 3.4e-104 384.0 954 32.0
CsaV3_6G037120 Cucumis sativus L. HOM05D005096 ORTHO05D006566 4.4e-104 383.6 974 31.0
FAN15G1882 Fragaria x ananassa HOM05D005096 ORTHO05D006566 5.8e-104 383.3 952 32.5
Aqoxy2G03326 Aquilegia oxysepala HOM05D005096 ORTHO05D006566 1.3e-103 382.1 954 33.2
CiPaw.07G091400 Carya illinoinensis HOM05D005096 ORTHO05D006566 2.2e-103 381.3 967 32.7
Lj2A1173G9 Lonicera japonica HOM05D005096 ORTHO05D006566 2.9e-103 380.9 978 31.8
Potri.005G209200 Populus trichocarpa HOM05D005096 ORTHO05D006566 2.9e-103 380.9 958 32.2
COL.COLO4_09099 Corchorus olitorius HOM05D005096 ORTHO05D006566 3.8e-103 380.6 959 33.2
C08p00440 Brassica napus HOM05D005096 ORTHO05D006566 1.1e-102 379.0 952 33.4
Actinidia00750 Actinidia chinensis HOM05D005096 ORTHO05D006566 2.4e-102 377.9 980 32.0
SalBow4G0282 Salvia bowleyana HOM05D005096 ORTHO05D006566 4.2e-102 377.1 954 32.3
RcHm_v2.0_Chr6g0291071 Rosa chinensis HOM05D005096 ORTHO05D006566 5.4e-102 376.7 956 32.4
Medtr1g072270 Medicago truncatula HOM05D005096 ORTHO05D006566 7.1e-102 376.3 956 32.3
Oeu022870.1 Olea europaea HOM05D005096 ORTHO05D006566 9.3e-102 375.9 990 32.7
ClCG07G000240 Citrullus lanatus HOM05D005096 ORTHO05D006566 1.2e-101 375.6 950 32.0
Haze_04712 Corylus avellana HOM05D005096 ORTHO05D006566 2.1e-101 374.8 992 32.2
BolC8t46843H Brassica oleracea HOM05D005096 ORTHO05D006566 2.7e-101 374.4 952 32.7
Carub.0001s0230 Capsella rubella HOM05D005096 ORTHO05D006566 4.6e-101 373.6 948 33.0
Migut.D00294 Erythranthe guttata HOM05D005096 ORTHO05D006566 6.0e-101 373.2 973 31.9
A08p37450 Brassica napus HOM05D005096 ORTHO05D006566 7.8e-101 372.9 952 31.6
BraA08t35643Z Brassica rapa HOM05D005096 ORTHO05D006566 7.8e-101 372.9 952 31.6
CARHR002500 Cardamine hirsuta HOM05D005096 ORTHO05D006566 7.8e-101 372.9 952 32.4
PSO170G0567 Papaver somniferum HOM05D005096 ORTHO05D006566 1.0e-100 372.5 943 33.4
Glyma.02G147400 Glycine max HOM05D005096 ORTHO05D006566 1.7e-100 371.7 959 32.6
Thhalv10006729m.g Eutrema salsugineum HOM05D005096 ORTHO05D006566 3.0e-100 370.9 952 33.0
EL10Ac7g17230 Beta vulgaris HOM05D005096 ORTHO05D006566 5.1e-100 370.2 982 31.5
PRCOL_00001755 Prasinoderma coloniale HOM05D005096 ORTHO05D006566 6.6e-100 369.8 992 31.6
Sabra05G0159300 Salix brachista HOM05D005096 ORTHO05D006566 8.7e-100 369.4 958 31.2
TWI23G0916 Tripterygium wilfordii HOM05D005096 ORTHO05D006566 8.7e-100 369.4 955 32.8
AL1G12650 Arabidopsis lyrata HOM05D005096 ORTHO05D006566 1.9e-99 368.2 947 31.9
SGA_v2.0_scaffold1G00471 Striga asiatica HOM05D005096 ORTHO05D006566 2.5e-99 367.9 865 35.4
Lj5g0021757 Lotus japonicus HOM05D005096 ORTHO05D006566 4.3e-99 367.1 955 32.7
PSO302G0140 Papaver somniferum HOM05D005096 ORTHO05D006566 7.3e-99 366.3 942 32.3
Sp1g02185 Schrenkiella parvula HOM05D005096 ORTHO05D006566 7.3e-99 366.3 957 32.3
TPR.G9125 Trifolium pratense HOM05D005096 ORTHO05D006566 7.3e-99 366.3 954 32.8
Ca_09758_v3 Cicer arietinum L. HOM05D005096 ORTHO05D006566 9.6e-99 365.9 960 32.6
Glyma.10G026400 Glycine max HOM05D005096 ORTHO05D006566 9.6e-99 365.9 955 33.0
Lsat_1_v5_gn_9_3760 Lactuca sativa HOM05D005096 ORTHO05D006566 2.1e-98 364.8 946 31.6
vmacro02569 Vaccinium macrocarpon HOM05D005096 ORTHO05D006566 2.1e-98 364.8 957 32.2
Ah.15g091940 Amaranthus hybridus HOM05D005096 ORTHO05D006566 3.6e-98 364.0 950 32.7
Ciclev10023868m.g Citrus clementina HOM05D005096 ORTHO05D006566 3.6e-98 364.0 962 32.8
QL12p021914 Quercus lobata HOM05D005096 ORTHO05D006566 3.6e-98 364.0 952 31.7
Nitab4.5_0000458g0050 Nicotiana tabacum HOM05D005096 ORTHO05D006566 6.2e-98 363.2 952 32.2
Manes.05G076137 Manihot esculenta HOM05D005096 ORTHO05D006566 1.8e-97 361.7 952 32.1
Thecc.01G279600 Theobroma cacao HOM05D005096 ORTHO05D006566 4.0e-97 360.5 938 32.7
MSTRG.21562 Avicennia marina HOM05D005096 ORTHO05D006566 5.3e-97 360.1 974 30.9
VMungo0720G0024 Vigna mungo HOM05D005096 ORTHO05D006566 6.9e-97 359.8 956 31.8
unitig_0.g1141 Utricularia gibba HOM05D005096 ORTHO05D003974 9.0e-97 359.4 973 31.7
Rhsim13G0024600 Rhododendron simsii HOM05D005096 ORTHO05D006566 1.5e-96 358.6 952 31.8
Peaxi162Scf01607g00116 Petunia axillaris HOM05D005096 ORTHO05D006566 2.0e-96 358.2 963 32.9
Nitab4.5_0008435g0030 Nicotiana tabacum HOM05D005096 ORTHO05D006566 2.6e-96 357.8 952 31.9
Hund05342 Selenicereus undatus HOM05D005096 ORTHO05D006566 4.5e-96 357.1 956 32.5
HPP92_012091 Vanilla planifolia HOM05D003650 ORTHO05D004213 5.8e-96 356.7 953 32.1
ECA247G0546 Erigeron canadensis HOM05D005096 ORTHO05D006566 2.2e-95 354.8 952 31.6
HanXRQChr10g0282661 Helianthus annuus HOM05D005096 ORTHO05D006566 2.9e-95 354.4 953 30.7
Phvul.007G172000 Phaseolus vulgaris HOM05D005096 ORTHO05D006566 6.4e-95 353.2 954 32.7
Sc05g0004960 Simmondsia chinensis HOM05D005096 ORTHO05D006566 6.4e-95 353.2 957 32.1
FAN24G2260 Fragaria x ananassa HOM05D005096 ORTHO05D006566 1.1e-94 352.4 926 32.0
arahy.Tifrunner.gnm1.ann1.TN9YNV Arachis hypogaea HOM05D005096 ORTHO05D006566 1.4e-94 352.1 1022 30.5
DCAR_002736 Daucus carota HOM05D005096 ORTHO05D006566 1.4e-94 352.1 960 31.1
Aa31LG1G9370 Aethionema arabicum HOM05D005096 ORTHO05D006566 3.2e-94 350.9 947 32.1
MBI19_g21295_MAGBIO Magnolia biondii HOM05D005096 ORTHO05D006566 3.2e-94 350.9 886 32.6
Cc01_g19500 Coffea canephora HOM05D005096 ORTHO05D006566 5.4e-94 350.1 975 29.7
Sopen09g026860 Solanum pennellii HOM05D005096 ORTHO05D006566 5.4e-94 350.1 956 32.7
Sed0025205 Sechium edule HOM05D005096 ORTHO05D006566 1.6e-93 348.6 962 30.6
Gorai.004G080200 Gossypium raimondii HOM05D005096 ORTHO05D006566 2.7e-93 347.8 963 31.5
Duzib133G0542 Durio zibethinus HOM05D005096 ORTHO05D006566 1.6e-90 338.6 958 31.7
CDE06G0317 Ceratophyllum demersum HOM05D005096 ORTHO05D006566 6.9e-89 333.2 921 32.9
Hma1.2p1_0257F.1_g103450 Hydrangea macrophylla HOM05D005096 ORTHO05D006566 1.5e-88 332.0 562 41.6
Psat6g060000 Pisum sativum HOM05D005096 ORTHO05D006566 4.5e-88 330.5 863 33.3
CANSAT25G0791 Cannabis sativa HOM05D005096 ORTHO05D006566 1.1e-86 325.9 956 30.8
Os05g0390100 Oryza sativa ssp. japonica HOM05D005096 ORTHO05D006566 5.5e-86 323.6 904 30.2
PGR119G0033 Punica granatum HOM05D005096 ORTHO05D006566 2.8e-82 311.2 595 38.5
Gohir.D08G075900 Gossypium hirsutum HOM05D005096 ORTHO05D006566 6.2e-82 310.1 963 30.0
Eucgr.H01482 Eucalyptus grandis HOM05D005096 ORTHO05D006566 1.4e-81 308.9 609 33.3
Gohir.A08G067500 Gossypium hirsutum HOM05D005096 ORTHO05D006566 5.3e-81 307.0 605 38.2
AT1G03160 Arabidopsis thaliana HOM05D005096 ORTHO05D006566 1.2e-80 305.8 678 36.1
Solyc09g065160.4 Solanum lycopersicum HOM05D005096 ORTHO05D006566 5.0e-79 300.4 548 39.6
CAN.G242.2 Capsicum annuum HOM05D005096 ORTHO05D006566 1.2e-77 295.8 959 29.4
Cre14.g616600 Chlamydomonas reinhardtii HOM05D005096 ORTHO05D006566 1.3e-76 292.4 1020 28.5
MCO02G198 Micromonas commoda HOM05D005096 ORTHO05D006566 5.1e-76 290.4 1038 28.5
AUR62036827 Chenopodium quinoa HOM05D005096 ORTHO05D006566 1.3e-74 285.8 964 28.7
Zm00001eb287190 Zea mays HOM05D005096 ORTHO05D006566 6.9e-73 280.0 624 32.2
Duzib133G0424 Durio zibethinus HOM05D005096 ORTHO05D006566 1.0e-68 266.2 549 34.8
AUR62043137 Chenopodium quinoa HOM05D005096 ORTHO05D006566 8.8e-68 263.1 955 28.9
Lalb_Chr02g0142781 Lupinus albus HOM05D005096 ORTHO05D006566 2.6e-64 251.5 551 32.1
MD11G1312200 Malus domestica HOM05D005096 ORTHO05D006566 6.5e-55 220.3 533 32.6
Sabra02G0043400 Salix brachista HOM05D005096 ORTHO05D006566 5.5e-54 217.2 645 30.7
MD11G1311700 Malus domestica HOM05D005096 ORTHO05D006566 1.7e-47 195.7 213 51.6
MELO3C014400.2 Cucumis melo HOM05D005096 ORTHO05D008790 1.8e-44 185.7 458 33.6
Hund05386 Selenicereus undatus HOM05D005096 ORTHO05D006566 2.6e-43 181.8 470 35.1
MELO3C014401.2 Cucumis melo HOM05D005096 ORTHO05D006566 3.1e-41 174.9 469 30.1
AUR62043138 Chenopodium quinoa HOM05D005096 ORTHO05D006566 2.7e-37 161.8 519 32.0
SEGI_13636 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 1.2e-35 156.4 286 33.6
SEGI_14404 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 5.0e-31 141.0 410 34.9
Cpa.g.c38803 Carica papaya HOM05D005096 ORTHO05D006566 1.2e-27 129.8 354 33.6
Hund05340 Selenicereus undatus HOM05D005096 ORTHO05D006566 1.3e-26 126.3 112 59.8
Potri.002G053332 Populus trichocarpa HOM05D005096 ORTHO05D006566 9.2e-25 120.2 85 65.9
Lalb_Chr02g0142771 Lupinus albus HOM05D005096 ORTHO05D006566 1.5e-22 112.8 404 30.7
MD11G1311400 Malus domestica HOM05D005096 ORTHO05D006566 3.6e-21 108.2 246 37.0
MD11G1311600 Malus domestica HOM05D005096 ORTHO05D006566 3.6e-21 108.2 234 30.3
Sabra05G0150000 Salix brachista HOM05D005096 ORTHO05D006566 2.0e-19 102.4 152 34.2
Migut.D00341 Erythranthe guttata HOM05D005096 ORTHO05D006566 3.7e-18 98.2 552 26.4
Glyma.18G167550 Glycine max HOM05D005096 ORTHO05D006566 4.6e-16 91.3 98 53.1
Potri.002G053366 Populus trichocarpa HOM05D005096 ORTHO05D006566 7.8e-16 90.5 152 30.9
arahy.Tifrunner.gnm1.ann1.X3UYKF Arachis hypogaea HOM05D005525 ORTHO05D006341 1.7e-15 89.4 110 48.2
Cpa.g.c44243 Carica papaya HOM05D005096 ORTHO05D006566 2.5e-14 85.5 127 36.2
arahy.Tifrunner.gnm1.ann1.BB9JSJ Arachis hypogaea HOM05D000384 ORTHO05D000468 3.3e-14 85.1 93 49.5
SEGI_24308 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 4.3e-14 84.7 74 59.5
arahy.Tifrunner.gnm1.ann1.VTSW9N Arachis hypogaea HOM05D005096 ORTHO05D006566 2.8e-13 82.0 127 35.4
arahy.Tifrunner.gnm1.ann1.K3B567 Arachis hypogaea HOM05D005525 ORTHO05D006341 3.6e-13 81.6 137 38.0
arahy.Tifrunner.gnm1.ann1.Y3S9ZW Arachis hypogaea HOM05D005525 ORTHO05D006341 3.6e-13 81.6 175 35.4
AUR62043139 Chenopodium quinoa HOM05D005096 ORTHO05D006566 1.2e-11 76.6 197 29.4
PGSC0003DMG400012881 Solanum tuberosum HOM05D005096 ORTHO05D006566 7.5e-11 73.9 108 42.6
Cpa.g.sc370.1 Carica papaya HOM05D005096 ORTHO05D006566 9.8e-11 73.6 107 43.9
MD00G1063200 Malus domestica HOM05D005096 ORTHO05D006566 2.1e-08 65.9 149 30.9
SEGI_20481 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 1.3e-07 63.2 153 30.7
TAR362G0796 Trochodendron aralioides HOM05D005096 ORTHO05D006566 4.3e-06 58.2 60 48.3


User provided reference genes

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