Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g40088 Chara braunii HOM05D006622 ORTHO05D007939 1.6e-91 339.3 165 100.0
Glyma.04G249500 Glycine max HOM05D006622 ORTHO05D007939 5.1e-29 131.7 154 44.2
Lj1g0017707 Lotus japonicus HOM05D006622 ORTHO05D007939 1.5e-28 130.2 164 42.7
Oeu040412.1 Olea europaea HOM05D006622 ORTHO05D007939 4.3e-28 128.6 169 42.0
Glyma.06G113400 Glycine max HOM05D006622 ORTHO05D007939 5.6e-28 128.3 154 44.2
Aa31LG7G5770 Aethionema arabicum HOM05D006622 ORTHO05D007939 7.3e-28 127.9 165 41.2
CiPaw.06G031300 Carya illinoinensis HOM05D006622 ORTHO05D007939 9.6e-28 127.5 164 41.5
Thhalv10008385m.g Eutrema salsugineum HOM05D006622 ORTHO05D007939 9.6e-28 127.5 169 42.0
Lalb_Chr11g0065931 Lupinus albus HOM05D006622 ORTHO05D007939 9.6e-28 127.5 156 42.3
Medtr3g088060 Medicago truncatula HOM05D006622 ORTHO05D007939 9.6e-28 127.5 164 40.2
Carub.0001s2125 Capsella rubella HOM05D006622 ORTHO05D007939 1.3e-27 127.1 165 43.6
CARHR022170 Cardamine hirsuta HOM05D006622 ORTHO05D007939 1.3e-27 127.1 157 43.3
C05p20800 Brassica napus HOM05D006622 ORTHO05D007939 1.6e-27 126.7 157 43.9
BolC5t30779H Brassica oleracea HOM05D006622 ORTHO05D007939 1.6e-27 126.7 157 43.9
Eucgr.F04350 Eucalyptus grandis HOM05D006622 ORTHO05D007939 1.6e-27 126.7 161 41.6
VMungo1309G2133 Vigna mungo HOM05D006622 ORTHO05D007939 1.6e-27 126.7 159 42.1
BcaC05g26102 Brassica carinata HOM05D006622 ORTHO05D007939 2.1e-27 126.3 157 43.9
A06p17900 Brassica napus HOM05D006622 ORTHO05D007939 2.1e-27 126.3 157 43.9
BraA06t24880Z Brassica rapa HOM05D006622 ORTHO05D007939 2.1e-27 126.3 157 43.9
vmacro00835 Vaccinium macrocarpon HOM05D006622 ORTHO05D007939 2.1e-27 126.3 161 43.5
BcaB07g32178 Brassica carinata HOM05D006622 ORTHO05D007939 2.8e-27 125.9 157 42.7
MELO3C010612.2 Cucumis melo HOM05D006622 ORTHO05D007939 2.8e-27 125.9 144 45.8
THA.LOC104800197 Tarenaya hassleriana HOM05D006622 ORTHO05D007939 2.8e-27 125.9 165 41.2
Phvul.009G125300 Phaseolus vulgaris HOM05D006622 ORTHO05D007939 4.8e-27 125.2 152 42.8
PGR044G1562 Punica granatum HOM05D006622 ORTHO05D007939 4.8e-27 125.2 150 44.7
PGSC0003DMG400044436 Solanum tuberosum HOM05D006622 ORTHO05D007939 4.8e-27 125.2 159 44.7
PGSC0003DMG402008996 Solanum tuberosum HOM05D006622 ORTHO05D007939 4.8e-27 125.2 159 44.7
TAR628G0332 Trochodendron aralioides HOM05D006622 ORTHO05D007939 4.8e-27 125.2 150 47.3
AT1G21790 Arabidopsis thaliana HOM05D006622 ORTHO05D007939 6.2e-27 124.8 164 42.1
Ca_16559_v3 Cicer arietinum L. HOM05D006622 ORTHO05D007939 6.2e-27 124.8 164 40.2
Sed0026599 Sechium edule HOM05D006622 ORTHO05D007939 6.2e-27 124.8 144 44.4
Solyc01g079770.2 Solanum lycopersicum HOM05D006622 ORTHO05D007939 8.1e-27 124.4 156 45.5
AL1G34990 Arabidopsis lyrata HOM05D006622 ORTHO05D007939 1.1e-26 124.0 164 41.5
Ciclev10001495m.g Citrus clementina HOM05D006622 ORTHO05D007939 1.1e-26 124.0 150 43.3
Sopen01g031530 Solanum pennellii HOM05D006622 ORTHO05D007939 1.1e-26 124.0 156 45.5
QL09p034510 Quercus lobata HOM05D006622 ORTHO05D007939 1.8e-26 123.2 161 41.6
arahy.Tifrunner.gnm1.ann1.29UIE3 Arachis hypogaea HOM05D006622 ORTHO05D007939 2.4e-26 122.9 145 44.1
TPR.G21062 Trifolium pratense HOM05D006622 ORTHO05D007939 2.4e-26 122.9 164 40.2
CsaV3_6G034460 Cucumis sativus L. HOM05D006622 ORTHO05D007939 3.1e-26 122.5 144 45.1
SGA_v2.0_scaffold24G10458 Striga asiatica HOM05D006622 ORTHO05D007939 3.1e-26 122.5 164 42.1
Os01g0869600 Oryza sativa ssp. japonica HOM05D006622 ORTHO05D007939 4.0e-26 122.1 145 45.5
CSS0023480 Camellia sinensis var. sinensis HOM05D006622 ORTHO05D007939 5.3e-26 121.7 150 45.3
CSS0048522 Camellia sinensis var. sinensis HOM05D006622 ORTHO05D007939 5.3e-26 121.7 150 45.3
AUR62014332 Chenopodium quinoa HOM05D006622 ORTHO05D007939 5.3e-26 121.7 164 40.2
Dinv27309 Davidia involucrata HOM05D006622 ORTHO05D007939 5.3e-26 121.7 150 44.7
EL10Ac1g01019 Beta vulgaris HOM05D006622 ORTHO05D007939 6.9e-26 121.3 163 41.1
CAN.G69.14 Capsicum annuum HOM05D006622 ORTHO05D007939 6.9e-26 121.3 156 45.5
PSO017G0487 Papaver somniferum HOM05D006622 ORTHO05D007939 6.9e-26 121.3 149 45.6
PSO478G0228 Papaver somniferum HOM05D006622 ORTHO05D007939 6.9e-26 121.3 155 43.2
GSVIVG01008863001 Vitis vinifera HOM05D006622 ORTHO05D007939 6.9e-26 121.3 150 44.7
Atru.chr13.1464 Acer truncatum HOM05D006622 ORTHO05D007939 9.0e-26 120.9 145 42.8
Atru.chr13.1486 Acer truncatum HOM05D006622 ORTHO05D007939 9.0e-26 120.9 145 42.8
MSTRG.24172 Avicennia marina HOM05D006622 ORTHO05D007939 1.2e-25 120.6 160 43.1
AUR62019075 Chenopodium quinoa HOM05D006622 ORTHO05D007939 1.5e-25 120.2 164 39.6
RhsimUnG0092500 Rhododendron simsii HOM05D006622 ORTHO05D007939 2.0e-25 119.8 160 41.9
arahy.Tifrunner.gnm1.ann1.9BP3HC Arachis hypogaea HOM05D006622 ORTHO05D007939 2.6e-25 119.4 145 43.4
Migut.N03281 Erythranthe guttata HOM05D006622 ORTHO05D007939 3.4e-25 119.0 153 42.5
TWI60G0608 Tripterygium wilfordii HOM05D006622 ORTHO05D007939 3.4e-25 119.0 153 44.4
Cfa016021 Carpinus fangiana HOM05D006622 ORTHO05D007939 4.5e-25 118.6 150 43.3
DCAR_003552 Daucus carota HOM05D006622 ORTHO05D007939 4.5e-25 118.6 149 43.0
Manes.18G077500 Manihot esculenta HOM05D006622 ORTHO05D007939 4.5e-25 118.6 151 43.7
Potri.002G083300 Populus trichocarpa HOM05D006622 ORTHO05D007939 4.5e-25 118.6 160 41.9
Potri.005G178200 Populus trichocarpa HOM05D006622 ORTHO05D007939 4.5e-25 118.6 165 41.2
Sp1g19350 Schrenkiella parvula HOM05D006622 ORTHO05D007939 5.8e-25 118.2 114 48.2
Thecc.08G125800 Theobroma cacao HOM05D006622 ORTHO05D007939 5.8e-25 118.2 145 42.1
Haze_00437 Corylus avellana HOM05D006622 ORTHO05D007939 9.9e-25 117.5 150 42.7
Duzib093G0047 Durio zibethinus HOM05D006622 ORTHO05D007939 9.9e-25 117.5 150 41.3
MD15G1347700 Malus domestica HOM05D006622 ORTHO05D007939 1.3e-24 117.1 150 42.0
Zm00001eb366620 Zea mays HOM05D006622 ORTHO05D007939 1.3e-24 117.1 148 41.9
Aqoxy5G02345 Aquilegia oxysepala HOM05D006622 ORTHO05D007939 2.2e-24 116.3 150 41.3
Mapoly0055s0084 Marchantia polymorpha HOM05D006622 ORTHO05D007939 2.9e-24 115.9 153 39.9
COL.COLO4_20860 Corchorus olitorius HOM05D006622 ORTHO05D007939 3.8e-24 115.5 145 42.1
HPP92_013761 Vanilla planifolia HOM05D006622 ORTHO05D007939 3.8e-24 115.5 144 43.1
Zm00001eb146520 Zea mays HOM05D006622 ORTHO05D007939 4.9e-24 115.2 148 43.2
Actinidia29467 Actinidia chinensis HOM05D006622 ORTHO05D007939 6.4e-24 114.8 164 40.2
SMO351G0129 Selaginella moellendorffii HOM05D006622 ORTHO05D007939 6.4e-24 114.8 152 40.8
Sc15g0002770 Simmondsia chinensis HOM05D006622 ORTHO05D007939 6.4e-24 114.8 145 42.1
ATR0584G160 Amborella trichopoda HOM05D006622 ORTHO05D007939 1.1e-23 114.0 148 42.6
Gohir.D05G270800 Gossypium hirsutum HOM05D006622 ORTHO05D007939 1.4e-23 113.6 145 42.8
Sabra05G0134700 Salix brachista HOM05D006622 ORTHO05D007939 1.4e-23 113.6 150 42.0
Hund26807 Selenicereus undatus HOM05D006622 ORTHO05D007939 1.4e-23 113.6 158 39.9
FvH4_2g26990 Fragaria vesca HOM05D006622 ORTHO05D007939 1.9e-23 113.2 152 42.1
FAN15G0029 Fragaria x ananassa HOM05D006622 ORTHO05D007939 1.9e-23 113.2 144 43.8
FAN24G2914 Fragaria x ananassa HOM05D006622 ORTHO05D007939 1.9e-23 113.2 152 42.1
Gohir.A05G268900 Gossypium hirsutum HOM05D006622 ORTHO05D007939 1.9e-23 113.2 145 42.8
Gorai.009G283400 Gossypium raimondii HOM05D006622 ORTHO05D007939 2.4e-23 112.8 145 42.8
RcHm_v2.0_Chr6g0295871 Rosa chinensis HOM05D006622 ORTHO05D007939 5.4e-23 111.7 149 42.3
Cc10_g11940 Coffea canephora HOM05D006622 ORTHO05D007939 9.3e-23 110.9 159 42.1
MD08G1162300 Malus domestica HOM05D006622 ORTHO05D007939 3.5e-22 109.0 171 37.4
Prupe.1G495500 Prunus persica HOM05D006622 ORTHO05D007939 1.0e-21 107.5 150 41.3
HanXRQChr09g0260611 Helianthus annuus HOM05D006622 ORTHO05D007939 1.3e-21 107.1 162 40.1
Lsat_1_v5_gn_4_135580 Lactuca sativa HOM05D006622 ORTHO05D007939 1.3e-21 107.1 162 40.1
FAN20G1317 Fragaria x ananassa HOM05D006622 ORTHO05D007939 3.0e-21 105.9 152 40.8
Nitab4.5_0000630g0130 Nicotiana tabacum HOM05D006622 ORTHO05D007939 3.0e-21 105.9 160 41.2
CANSAT35G1811 Cannabis sativa HOM05D006622 ORTHO05D007939 8.7e-21 104.4 155 41.3
AagrBONN_evm.TU.Sc2ySwM_117.1000 Anthoceros agrestis HOM05D006622 ORTHO05D007939 7.4e-20 101.3 97 47.4
CANSAT35G0359 Cannabis sativa HOM05D006622 ORTHO05D007939 7.4e-20 101.3 155 40.0
Pp3c12_11900 Physcomitrium patens HOM05D006622 ORTHO05D007939 1.3e-19 100.5 148 38.5
ECA232G1829 Erigeron canadensis HOM05D006622 ORTHO05D007939 3.1e-18 95.9 151 39.7
Oeu040413.1 Olea europaea HOM05D006622 ORTHO05D007939 5.1e-13 78.6 66 54.5
Psat5g087320 Pisum sativum HOM05D006622 ORTHO05D007939 6.7e-13 78.2 56 60.7
Cpa.g.sc64.93 Carica papaya HOM05D006622 ORTHO05D007939 8.7e-13 77.8 64 57.8
ClCG08G005670 Citrullus lanatus HOM05D006622 ORTHO05D007939 1.5e-12 77.0 57 56.1
Aa31LG4G7650 Aethionema arabicum HOM05D006622 ORTHO05D007939 1.3e-11 73.9 57 57.9
AagrBONN_evm.TU.Sc2ySwM_117.972 Anthoceros agrestis HOM05D006622 ORTHO05D007939 1.4e-10 70.5 115 35.7
CDE06G0548 Ceratophyllum demersum HOM05D006622 ORTHO05D007939 8.4e-08 61.2 41 63.4


User provided reference genes

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