Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g4003 Chara braunii HOM05D004645 ORTHO05D005693 1.9e-163 579.7 452 100.0
Pp3c11_2710 Physcomitrium patens HOM05D004645 ORTHO05D005693 7.4e-30 136.0 129 48.1
TWI32G1082 Tripterygium wilfordii HOM05D004645 ORTHO05D005693 3.2e-25 120.6 155 43.2
AagrBONN_evm.TU.Sc2ySwM_228.1766 Anthoceros agrestis HOM05D004645 ORTHO05D005693 1.2e-24 118.6 144 43.1
Gohir.A13G158000 Gossypium hirsutum HOM05D004645 ORTHO05D005693 6.1e-24 116.3 144 43.1
Gohir.D13G162500 Gossypium hirsutum HOM05D004645 ORTHO05D005693 6.1e-24 116.3 144 43.1
Hund09812 Selenicereus undatus HOM05D004645 ORTHO05D005693 6.1e-24 116.3 150 42.7
Ciclev10031859m.g Citrus clementina HOM05D004645 ORTHO05D005693 1.0e-23 115.5 147 41.5
TWI60G0474 Tripterygium wilfordii HOM05D004645 ORTHO05D005693 1.0e-23 115.5 155 41.9
TAR629G2315 Trochodendron aralioides HOM05D004645 ORTHO05D005693 1.0e-23 115.5 158 42.4
GSVIVG01024286001 Vitis vinifera HOM05D004645 ORTHO05D005693 1.0e-23 115.5 145 42.8
Mapoly0012s0180 Marchantia polymorpha HOM05D004645 ORTHO05D005693 3.0e-23 114.0 202 36.1
SHI15009 Sapria himalayana HOM05D004645 ORTHO05D005693 3.0e-23 114.0 156 41.0
Thecc.05G223300 Theobroma cacao HOM05D004645 ORTHO05D005693 3.0e-23 114.0 144 42.4
ATR0582G008 Amborella trichopoda HOM05D004645 ORTHO05D005693 3.9e-23 113.6 157 43.9
CANSAT21G0324 Cannabis sativa HOM05D004645 ORTHO05D005693 3.9e-23 113.6 144 42.4
Gohir.D03G055700 Gossypium hirsutum HOM05D004645 ORTHO05D005693 3.9e-23 113.6 144 42.4
Gorai.003G058500 Gossypium raimondii HOM05D004645 ORTHO05D005693 3.9e-23 113.6 144 42.4
PSO063G6220 Papaver somniferum HOM05D004645 ORTHO05D005693 5.1e-23 113.2 158 39.9
CDE04G1041 Ceratophyllum demersum HOM05D004645 ORTHO05D005693 6.7e-23 112.8 138 43.5
Duzib128G1942 Durio zibethinus HOM05D004645 ORTHO05D005693 6.7e-23 112.8 153 40.5
Duzib177G0889 Durio zibethinus HOM05D004645 ORTHO05D005693 6.7e-23 112.8 153 40.5
PGR119G0624 Punica granatum HOM05D004645 ORTHO05D005693 6.7e-23 112.8 145 42.1
Os12g0465700 Oryza sativa ssp. japonica HOM05D004645 ORTHO05D005693 8.7e-23 112.5 144 41.7
PSO782G2658 Papaver somniferum HOM05D004645 ORTHO05D005693 8.7e-23 112.5 158 39.9
CiPaw.06G036400 Carya illinoinensis HOM05D004645 ORTHO05D005693 1.1e-22 112.1 144 41.7
Dinv01810 Davidia involucrata HOM05D004645 ORTHO05D005693 1.1e-22 112.1 153 41.8
Gohir.A02G114700 Gossypium hirsutum HOM05D004645 ORTHO05D005693 1.1e-22 112.1 144 41.7
Sed0013778 Sechium edule HOM05D004645 ORTHO05D005693 1.5e-22 111.7 151 40.4
Lj3C883G6 Lonicera japonica HOM05D000507 ORTHO05D000416 1.9e-22 111.3 181 34.8
Glyma.12G014000 Glycine max HOM05D004645 ORTHO05D005693 3.3e-22 110.5 158 39.9
Manes.09G130100 Manihot esculenta HOM05D004645 ORTHO05D005693 3.3e-22 110.5 155 39.4
SEGI_39287 Sequoiadendron giganteum HOM05D004645 ORTHO05D005693 3.3e-22 110.5 148 41.2
TAR633G2534 Trochodendron aralioides HOM05D004645 ORTHO05D005693 3.3e-22 110.5 154 42.2
Atru.chr12.1851 Acer truncatum HOM05D004645 ORTHO05D005693 4.3e-22 110.2 154 40.3
CiPaw.05G212200 Carya illinoinensis HOM05D004645 ORTHO05D005693 4.3e-22 110.2 144 41.0
MELO3C014340.2 Cucumis melo HOM05D004645 ORTHO05D005693 4.3e-22 110.2 157 37.6
CsaV3_6G036830 Cucumis sativus L. HOM05D004645 ORTHO05D005693 4.3e-22 110.2 157 37.6
Lj1g0014871 Lotus japonicus HOM05D004645 ORTHO05D005693 4.3e-22 110.2 145 41.4
Medtr0004s0240 Medicago truncatula HOM05D004645 ORTHO05D005693 4.3e-22 110.2 159 39.0
arahy.Tifrunner.gnm1.ann1.3IB4NC Arachis hypogaea HOM05D004645 ORTHO05D005693 5.7e-22 109.8 157 39.5
arahy.Tifrunner.gnm1.ann1.7F5N7U Arachis hypogaea HOM05D004645 ORTHO05D005693 5.7e-22 109.8 157 39.5
Glyma.09G223000 Glycine max HOM05D004645 ORTHO05D005693 5.7e-22 109.8 158 39.9
Phvul.011G016900 Phaseolus vulgaris HOM05D004645 ORTHO05D005693 5.7e-22 109.8 145 40.7
Prupe.2G329500 Prunus persica HOM05D004645 ORTHO05D005693 5.7e-22 109.8 152 40.1
CSS0029852 Camellia sinensis var. sinensis HOM05D004645 ORTHO05D005693 7.4e-22 109.4 153 39.2
CSS0046309 Camellia sinensis var. sinensis HOM05D004645 ORTHO05D005693 7.4e-22 109.4 153 39.2
Hma1.2p1_0419F.1_g149550 Hydrangea macrophylla HOM05D004645 ORTHO05D005693 7.4e-22 109.4 153 39.9
Potri.013G076800 Populus trichocarpa HOM05D004645 ORTHO05D005693 7.4e-22 109.4 155 40.6
C09p59630 Brassica napus HOM05D004645 ORTHO05D005693 9.7e-22 109.0 148 39.9
FvH4_7g34300 Fragaria vesca HOM05D004645 ORTHO05D005693 9.7e-22 109.0 150 40.0
FAN10G3994 Fragaria x ananassa HOM05D004645 ORTHO05D005693 9.7e-22 109.0 150 40.0
HanXRQChr14g0434641 Helianthus annuus HOM05D004645 ORTHO05D005693 9.7e-22 109.0 154 37.7
MD01G1239600 Malus domestica HOM05D004645 ORTHO05D005693 9.7e-22 109.0 150 39.3
CARHR195680 Cardamine hirsuta HOM05D004645 ORTHO05D005693 1.3e-21 108.6 148 40.5
Lalb_Chr03g0037841 Lupinus albus HOM05D004645 ORTHO05D005693 1.3e-21 108.6 143 39.9
BcaB08g36765 Brassica carinata HOM05D004645 ORTHO05D005693 1.6e-21 108.2 148 39.9
BcaC04g18782 Brassica carinata HOM05D004645 ORTHO05D005693 1.6e-21 108.2 148 39.9
A10p21880 Brassica napus HOM05D004645 ORTHO05D005693 1.6e-21 108.2 148 39.9
BolC9t58802H Brassica oleracea HOM05D004645 ORTHO05D005693 1.6e-21 108.2 148 39.9
BraA10t44247Z Brassica rapa HOM05D004645 ORTHO05D005693 1.6e-21 108.2 148 39.9
HanXRQChr11g0333681 Helianthus annuus HOM05D004645 ORTHO05D005693 1.6e-21 108.2 155 38.7
Manes.08G160200 Manihot esculenta HOM05D004645 ORTHO05D005693 1.6e-21 108.2 156 38.5
VMungo1127G1262 Vigna mungo HOM05D004645 ORTHO05D005693 1.6e-21 108.2 158 39.2
Thhalv10013879m.g Eutrema salsugineum HOM05D004645 ORTHO05D005693 2.2e-21 107.8 148 39.9
RcHm_v2.0_Chr1g0384691 Rosa chinensis HOM05D004645 ORTHO05D005693 2.8e-21 107.5 150 39.3
Sp6g26710 Schrenkiella parvula HOM05D004645 ORTHO05D005693 2.8e-21 107.5 148 39.9
Actinidia33801 Actinidia chinensis HOM05D004645 ORTHO05D005693 3.7e-21 107.1 144 41.0
ClCG09G013170 Citrullus lanatus HOM05D004645 ORTHO05D005693 3.7e-21 107.1 153 37.9
Oeu028988.1 Olea europaea HOM05D004645 ORTHO05D005693 3.7e-21 107.1 149 38.9
MSTRG.26920 Avicennia marina HOM05D004645 ORTHO05D005693 6.3e-21 106.3 161 39.8
Migut.L00703 Erythranthe guttata HOM05D004645 ORTHO05D005693 6.3e-21 106.3 156 39.1
Potri.019G042800 Populus trichocarpa HOM05D004645 ORTHO05D005693 6.3e-21 106.3 155 39.4
AT5G17510 Arabidopsis thaliana HOM05D004645 ORTHO05D005693 8.2e-21 105.9 148 39.2
A06p26400 Brassica napus HOM05D004645 ORTHO05D005693 8.2e-21 105.9 133 40.6
BNapus_Darmor_BZH_scaffold_78p00150 Brassica napus HOM05D004645 ORTHO05D005693 8.2e-21 105.9 133 40.6
THA.LOC104820831 Tarenaya hassleriana HOM05D004645 ORTHO05D005693 1.4e-20 105.1 157 37.6
BNapus_Darmor_BZH_scaffold_162p00170 Brassica napus HOM05D004645 ORTHO05D005693 1.8e-20 104.8 133 39.1
BolC1t05829H Brassica oleracea HOM05D004645 ORTHO05D005693 1.8e-20 104.8 133 39.1
BraA01t04578Z Brassica rapa HOM05D004645 ORTHO05D005693 1.8e-20 104.8 133 40.6
Carub.0006s1574 Capsella rubella HOM05D004645 ORTHO05D005693 2.4e-20 104.4 148 39.2
DCAR_014580 Daucus carota HOM05D004645 ORTHO05D005693 2.4e-20 104.4 138 39.1
ECA238G1292 Erigeron canadensis HOM05D004645 ORTHO05D005693 2.4e-20 104.4 154 37.0
Aqoxy5G00549 Aquilegia oxysepala HOM05D004645 ORTHO05D005693 3.1e-20 104.0 148 36.5
AL6G28600 Arabidopsis lyrata HOM05D004645 ORTHO05D005693 3.1e-20 104.0 148 38.5
Oeu027899.1 Olea europaea HOM05D004645 ORTHO05D005693 3.1e-20 104.0 149 37.6
Peaxi162Scf00516g00425 Petunia axillaris HOM05D004645 ORTHO05D005693 3.1e-20 104.0 138 37.0
BcaC09g47748 Brassica carinata HOM05D004645 ORTHO05D005693 4.1e-20 103.6 142 40.1
AUR62028214 Chenopodium quinoa HOM05D004645 ORTHO05D005693 4.1e-20 103.6 124 41.9
Cc02_g00050 Coffea canephora HOM05D004645 ORTHO05D005693 4.1e-20 103.6 157 38.2
Lj5g0009502 Lotus japonicus HOM05D004645 ORTHO05D005693 5.3e-20 103.2 153 39.2
THA.LOC104802906 Tarenaya hassleriana HOM05D004645 ORTHO05D005693 6.9e-20 102.8 156 37.8
Lsat_1_v5_gn_8_3080 Lactuca sativa HOM05D004645 ORTHO05D005693 9.0e-20 102.4 168 35.7
Nitab4.5_0009278g0030 Nicotiana tabacum HOM05D004645 ORTHO05D005693 9.0e-20 102.4 158 36.7
Solyc03g097300.4 Solanum lycopersicum HOM05D004645 ORTHO05D005693 9.0e-20 102.4 172 34.9
Sopen03g028070 Solanum pennellii HOM05D004645 ORTHO05D005693 9.0e-20 102.4 172 34.9
Aa31LG11G12160 Aethionema arabicum HOM05D004645 ORTHO05D005693 1.2e-19 102.1 157 36.9
Aa31LG5G13980 Aethionema arabicum HOM05D000507 ORTHO05D000416 1.2e-19 102.1 144 39.6
Lalb_Chr19g0140101 Lupinus albus HOM05D004645 ORTHO05D005693 1.2e-19 102.1 153 38.6
CAN.G732.33 Capsicum annuum HOM05D004645 ORTHO05D005693 2.0e-19 101.3 172 33.1
ECA233G1188 Erigeron canadensis HOM05D004645 ORTHO05D005693 2.6e-19 100.9 146 37.7
Thhalv10020936m.g Eutrema salsugineum HOM05D004645 ORTHO05D005693 2.6e-19 100.9 154 38.3
PGSC0003DMG400026490 Solanum tuberosum HOM05D004645 ORTHO05D005693 3.4e-19 100.5 172 34.9
Sp3g02460 Schrenkiella parvula HOM05D004645 ORTHO05D005693 5.9e-19 99.8 153 37.3
TPR.G9835 Trifolium pratense HOM05D004645 ORTHO05D005693 5.9e-19 99.8 110 43.6
Nitab4.5_0000021g0850 Nicotiana tabacum HOM05D004645 ORTHO05D005693 1.0e-18 99.0 158 36.1
AUR62002096 Chenopodium quinoa HOM05D004645 ORTHO05D005693 1.7e-18 98.2 112 43.8
HPP92_006448 Vanilla planifolia HOM05D004645 ORTHO05D005693 2.9e-18 97.4 154 37.7
unitig_92.g28227 Utricularia gibba HOM05D004645 ORTHO05D005693 3.8e-18 97.1 137 38.0
Gorai.013G184600 Gossypium raimondii HOM05D004645 ORTHO05D005693 8.5e-18 95.9 154 37.7
Ah.04g156130 Amaranthus hybridus HOM05D004645 ORTHO05D005693 1.1e-17 95.5 112 41.1
SGA_v2.0_scaffold18G08211 Striga asiatica HOM05D004645 ORTHO05D005693 1.1e-17 95.5 159 37.7
Carub.0003s0260 Capsella rubella HOM05D004645 ORTHO05D005693 1.9e-17 94.7 154 37.7
FAN03G2055 Fragaria x ananassa HOM05D004645 ORTHO05D005693 2.5e-17 94.4 170 34.7
HPP92_027983 Vanilla planifolia HOM05D004645 ORTHO05D005693 2.5e-17 94.4 146 37.7
HanXRQChr05g0156891 Helianthus annuus HOM05D004645 ORTHO05D005693 2.1e-16 91.3 145 35.9
AL3G13140 Arabidopsis lyrata HOM05D004645 ORTHO05D005693 3.6e-16 90.5 159 34.0
AT3G03460 Arabidopsis thaliana HOM05D004645 ORTHO05D005693 6.7e-15 86.3 159 33.3
Os04g0393100 Oryza sativa ssp. japonica HOM05D004645 ORTHO05D005693 1.3e-13 82.0 125 38.4
Sabra19G0053400 Salix brachista HOM05D004645 ORTHO05D005693 3.7e-13 80.5 196 30.6
COL.COLO4_15124 Corchorus olitorius HOM05D004645 ORTHO05D005693 1.2e-11 75.5 115 38.3
EL10Ac3g05041 Beta vulgaris HOM05D004645 ORTHO05D005693 1.5e-11 75.1 184 27.7
vmacro06368 Vaccinium macrocarpon HOM05D004645 ORTHO05D005693 2.0e-11 74.7 139 35.3
Haze_00365 Corylus avellana HOM05D004645 ORTHO05D005693 3.4e-11 73.9 130 36.2
Sc08g0005180 Simmondsia chinensis HOM05D004645 ORTHO05D005693 4.5e-11 73.6 120 37.5
QL09p020526 Quercus lobata HOM05D004645 ORTHO05D005693 5.9e-11 73.2 114 37.7
DCAR_010525 Daucus carota HOM05D004645 ORTHO05D005693 7.7e-11 72.8 126 31.7
FAN01G0394 Fragaria x ananassa HOM05D004645 ORTHO05D005693 1.0e-10 72.4 105 37.1
Psat7g154680 Pisum sativum HOM05D004645 ORTHO05D005693 1.3e-10 72.0 79 45.6
Zm00001eb421230 Zea mays HOM05D004645 ORTHO05D005693 1.7e-10 71.6 155 27.7
Os04g0393200 Oryza sativa ssp. japonica HOM05D004645 ORTHO05D005693 2.9e-10 70.9 131 32.8
Rhsim03G0224700 Rhododendron simsii HOM05D004645 ORTHO05D005693 2.9e-10 70.9 126 35.7
Ca_19601_v3 Cicer arietinum L. HOM05D004645 ORTHO05D005693 5.5e-09 66.6 128 33.6


User provided reference genes

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