Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g39756 Chara braunii HOM05D002293 ORTHO05D005475 2.6e-116 422.2 227 100.0
CBR_g72646 Chara braunii HOM05D002293 ORTHO05D005475 6.0e-105 384.4 227 90.7
Mapoly0014s0184 Marchantia polymorpha HOM05D002293 ORTHO05D005475 2.0e-39 166.8 201 47.3
AagrBONN_evm.TU.Sc2ySwM_117.3341 Anthoceros agrestis HOM05D002293 ORTHO05D005475 7.5e-39 164.9 221 41.6
Pp3c9_7910 Physcomitrium patens HOM05D002293 ORTHO05D005475 5.0e-35 152.1 224 41.1
Potri.007G079500 Populus trichocarpa HOM05D002293 ORTHO05D005475 1.0e-24 117.9 200 36.0
Zm00001eb209000 Zea mays HOM05D002293 ORTHO05D005475 2.3e-24 116.7 202 35.6
Zm00001eb231220 Zea mays HOM05D002293 ORTHO05D005475 3.0e-24 116.3 202 36.1
MSTRG.24489 Avicennia marina HOM05D002293 ORTHO05D005475 4.0e-24 115.9 178 38.2
Sabra07G0066700 Salix brachista HOM05D002293 ORTHO05D005475 5.2e-24 115.5 200 35.0
AT2G21870 Arabidopsis thaliana HOM05D002293 ORTHO05D005475 8.8e-24 114.8 207 36.7
Sp4g00960 Schrenkiella parvula HOM05D002293 ORTHO05D005475 1.5e-23 114.0 193 37.3
BcaB06g27791 Brassica carinata HOM05D002293 ORTHO05D005475 2.0e-23 113.6 193 37.3
CARHR112910 Cardamine hirsuta HOM05D002293 ORTHO05D005475 2.0e-23 113.6 213 36.2
BolC4t26688H Brassica oleracea HOM05D002293 ORTHO05D005475 3.4e-23 112.8 193 37.3
vmacro08972 Vaccinium macrocarpon HOM05D002293 ORTHO05D005475 3.4e-23 112.8 209 36.4
Gohir.D11G057500 Gossypium hirsutum HOM05D002293 ORTHO05D005475 4.4e-23 112.5 178 37.1
A04p16460 Brassica napus HOM05D002293 ORTHO05D005475 5.7e-23 112.1 193 37.3
BraA04t17281Z Brassica rapa HOM05D002293 ORTHO05D005475 5.7e-23 112.1 193 37.3
Glyma.05G184800 Glycine max HOM05D002293 ORTHO05D005475 5.7e-23 112.1 199 36.7
Gohir.A11G054000 Gossypium hirsutum HOM05D002293 ORTHO05D005475 5.7e-23 112.1 178 36.5
MD01G1021000 Malus domestica HOM05D002293 ORTHO05D005475 5.7e-23 112.1 192 35.9
unitig_8.g4827 Utricularia gibba HOM05D002293 ORTHO05D005475 5.7e-23 112.1 218 34.9
Aqoxy6G00441 Aquilegia oxysepala HOM05D002293 ORTHO05D005475 7.5e-23 111.7 193 36.3
BcaC02g08759 Brassica carinata HOM05D002293 ORTHO05D005475 7.5e-23 111.7 193 37.3
C04p50970 Brassica napus HOM05D002293 ORTHO05D005475 7.5e-23 111.7 193 37.3
THA.LOC104804134 Tarenaya hassleriana HOM05D002293 ORTHO05D005475 7.5e-23 111.7 193 36.3
Thhalv10000307m.g Eutrema salsugineum HOM05D002293 ORTHO05D005475 9.8e-23 111.3 193 36.8
Glyma.08G142800 Glycine max HOM05D002293 ORTHO05D005475 9.8e-23 111.3 199 37.2
Prupe.6G169300 Prunus persica HOM05D002293 ORTHO05D005475 9.8e-23 111.3 194 36.6
SalBow6G4022 Salvia bowleyana HOM05D002293 ORTHO05D005475 1.3e-22 110.9 178 36.5
Cpa.g.sc72.4 Carica papaya HOM05D002293 ORTHO05D005475 1.7e-22 110.5 200 35.5
CiPaw.03G133000 Carya illinoinensis HOM05D002293 ORTHO05D005475 1.7e-22 110.5 192 35.4
THA.LOC104824852 Tarenaya hassleriana HOM05D002293 ORTHO05D005475 1.7e-22 110.5 193 35.8
arahy.Tifrunner.gnm1.ann1.LE5EW2 Arachis hypogaea HOM05D002293 ORTHO05D005475 2.2e-22 110.2 179 36.9
ECA247G2680 Erigeron canadensis HOM05D002293 ORTHO05D005475 2.2e-22 110.2 178 36.5
Migut.N02943 Erythranthe guttata HOM05D002293 ORTHO05D005475 2.2e-22 110.2 192 35.9
GSVIVG01022249001 Vitis vinifera HOM05D002293 ORTHO05D005475 2.2e-22 110.2 207 34.8
BcaB08g35009 Brassica carinata HOM05D002293 ORTHO05D005475 2.8e-22 109.8 193 36.8
C08p41150 Brassica napus HOM05D002293 ORTHO05D005475 2.8e-22 109.8 193 36.8
BraA09t41184Z Brassica rapa HOM05D002293 ORTHO05D005475 2.8e-22 109.8 193 36.8
MD15G1331100 Malus domestica HOM05D002293 ORTHO05D005475 2.8e-22 109.8 192 35.9
BcaC07g41114 Brassica carinata HOM05D002293 ORTHO05D005475 3.7e-22 109.4 194 36.6
BolC8t51682H Brassica oleracea HOM05D002293 ORTHO05D005475 3.7e-22 109.4 194 36.6
Carub.0004s0090 Capsella rubella HOM05D002293 ORTHO05D005475 3.7e-22 109.4 193 36.8
Cfa002767 Carpinus fangiana HOM05D002293 ORTHO05D005475 3.7e-22 109.4 178 35.4
Gorai.007G062700 Gossypium raimondii HOM05D002293 ORTHO05D005475 3.7e-22 109.4 178 36.5
Lsat_1_v5_gn_9_42461 Lactuca sativa HOM05D002293 ORTHO05D005475 3.7e-22 109.4 194 35.1
Manes.12G143700 Manihot esculenta HOM05D002293 ORTHO05D005475 3.7e-22 109.4 200 35.0
Oeu046075.1 Olea europaea HOM05D002293 ORTHO05D005475 3.7e-22 109.4 178 36.0
THA.LOC104807725 Tarenaya hassleriana HOM05D002293 ORTHO05D005475 3.7e-22 109.4 178 36.5
Hund19634 Selenicereus undatus HOM05D002293 ORTHO05D005475 4.9e-22 109.0 198 34.3
SGA_v2.0_scaffold364G49965 Striga asiatica HOM05D002293 ORTHO05D005475 4.9e-22 109.0 184 34.2
A09p57920 Brassica napus HOM05D002293 ORTHO05D005475 6.3e-22 108.6 193 36.8
HanXRQChr04g0115601 Helianthus annuus HOM05D002293 ORTHO05D005475 6.3e-22 108.6 178 36.5
Aa31LG7G14740 Aethionema arabicum HOM05D002293 ORTHO05D005475 8.3e-22 108.2 213 34.7
arahy.Tifrunner.gnm1.ann1.GC7XSK Arachis hypogaea HOM05D002293 ORTHO05D005475 8.3e-22 108.2 178 36.5
Lj2A567T21 Lonicera japonica HOM05D002293 ORTHO05D005475 8.3e-22 108.2 198 34.8
QL06p031785 Quercus lobata HOM05D002293 ORTHO05D005475 8.3e-22 108.2 178 36.0
TWI75G0492 Tripterygium wilfordii HOM05D002293 ORTHO05D005475 8.3e-22 108.2 209 35.4
AL4G11180 Arabidopsis lyrata HOM05D002293 ORTHO05D005475 1.1e-21 107.8 190 36.3
Ciclev10026373m.g Citrus clementina HOM05D002293 ORTHO05D005475 1.1e-21 107.8 215 35.3
CiPaw.04G090200 Carya illinoinensis HOM05D002293 ORTHO05D005475 1.4e-21 107.5 194 35.1
Eucgr.H04880 Eucalyptus grandis HOM05D002293 ORTHO05D005475 1.4e-21 107.5 215 34.4
Lj7A386T88 Lonicera japonica HOM05D002293 ORTHO05D005475 1.4e-21 107.5 192 35.9
Nn5g28871 Nelumbo nucifera HOM05D002293 ORTHO05D005475 1.4e-21 107.5 194 36.1
CsaV3_6G042260 Cucumis sativus L. HOM05D002293 ORTHO05D005475 1.8e-21 107.1 215 34.9
Duzib187G0135 Durio zibethinus HOM05D002293 ORTHO05D005475 1.8e-21 107.1 176 36.9
Duzib264G1168 Durio zibethinus HOM05D002293 ORTHO05D005475 1.8e-21 107.1 186 35.5
PSO675G2787 Papaver somniferum HOM05D002293 ORTHO05D005475 1.8e-21 107.1 227 35.2
Phvul.002G265700 Phaseolus vulgaris HOM05D002293 ORTHO05D005475 1.8e-21 107.1 199 36.7
Potri.005G085500 Populus trichocarpa HOM05D002293 ORTHO05D005475 1.8e-21 107.1 200 34.5
Sc03g0004490 Simmondsia chinensis HOM05D002293 ORTHO05D005475 1.8e-21 107.1 209 34.9
TWI31G0415 Tripterygium wilfordii HOM05D002293 ORTHO05D005475 1.8e-21 107.1 215 34.4
CSS0016943 Camellia sinensis var. sinensis HOM05D002293 ORTHO05D005475 2.4e-21 106.7 214 33.6
HanXRQChr02g0042411 Helianthus annuus HOM05D002293 ORTHO05D005475 2.4e-21 106.7 186 36.0
Sopen04g028170 Solanum pennellii HOM05D002293 ORTHO05D005475 2.4e-21 106.7 206 35.4
PGSC0003DMG400025052 Solanum tuberosum HOM05D002293 ORTHO05D005475 2.4e-21 106.7 206 35.9
CAN.G1252.8 Capsicum annuum HOM05D002293 ORTHO05D005475 3.1e-21 106.3 194 36.6
Hma1.2p1_2282F.1_g318820 Hydrangea macrophylla HOM05D002293 ORTHO05D005475 3.1e-21 106.3 193 35.8
Solyc04g072047.1 Solanum lycopersicum HOM05D002293 ORTHO05D005475 3.1e-21 106.3 206 35.0
Lsat_1_v5_gn_1_5861 Lactuca sativa HOM05D002293 ORTHO05D005475 4.1e-21 105.9 183 35.5
Sed0002744 Sechium edule HOM05D002293 ORTHO05D005475 4.1e-21 105.9 215 34.4
Lj4g0016673 Lotus japonicus HOM05D002293 ORTHO05D005475 5.4e-21 105.5 199 34.7
Nn3g18603 Nelumbo nucifera HOM05D002293 ORTHO05D005475 5.4e-21 105.5 209 35.9
TPR.G20796 Trifolium pratense HOM05D002293 ORTHO05D005475 5.4e-21 105.5 199 36.2
VMungo0251G0649 Vigna mungo HOM05D002293 ORTHO05D005475 5.4e-21 105.5 199 34.7
Actinidia12214 Actinidia chinensis HOM05D002293 ORTHO05D005475 7.0e-21 105.1 207 34.3
Ah.03g141640 Amaranthus hybridus HOM05D002293 ORTHO05D005475 7.0e-21 105.1 177 36.2
Haze_25060 Corylus avellana HOM05D002293 ORTHO05D005475 7.0e-21 105.1 178 34.8
Dinv41022 Davidia involucrata HOM05D002293 ORTHO05D005475 7.0e-21 105.1 209 34.0
Duzib147G0641 Durio zibethinus HOM05D002293 ORTHO05D005475 9.1e-21 104.8 177 35.6
Medtr8g092040 Medicago truncatula HOM05D002293 ORTHO05D005475 9.1e-21 104.8 199 34.7
RcHm_v2.0_Chr2g0117231 Rosa chinensis HOM05D002293 ORTHO05D005475 9.1e-21 104.8 192 33.9
Actinidia05381 Actinidia chinensis HOM05D002293 ORTHO05D005475 1.2e-20 104.4 198 34.3
Rhsim08G0005300 Rhododendron simsii HOM05D002293 ORTHO05D005475 1.2e-20 104.4 190 35.3
Atru.chr4.451 Acer truncatum HOM05D002293 ORTHO05D005475 1.6e-20 104.0 215 35.3
Gorai.007G246300 Gossypium raimondii HOM05D002293 ORTHO05D005475 1.6e-20 104.0 185 35.1
TAR376G0974 Trochodendron aralioides HOM05D002293 ORTHO05D005475 1.6e-20 104.0 200 34.5
Ah.02g125930 Amaranthus hybridus HOM05D002293 ORTHO05D005475 2.0e-20 103.6 176 35.8
Ca_17689_v3 Cicer arietinum L. HOM05D002293 ORTHO05D005475 2.0e-20 103.6 199 34.7
ClCG01G015980 Citrullus lanatus HOM05D002293 ORTHO05D005475 2.0e-20 103.6 215 34.0
Thecc.01G115200 Theobroma cacao HOM05D002293 ORTHO05D005475 2.0e-20 103.6 186 34.4
ATR0736G207 Amborella trichopoda HOM05D002293 ORTHO05D005475 2.7e-20 103.2 200 34.5
EL10Ac6g14774 Beta vulgaris HOM05D002293 ORTHO05D005475 2.7e-20 103.2 178 34.3
Dinv42674 Davidia involucrata HOM05D002293 ORTHO05D005475 2.7e-20 103.2 209 34.0
Gohir.A11G196900 Gossypium hirsutum HOM05D002293 ORTHO05D005475 3.5e-20 102.8 186 34.9
PSO541G6166 Papaver somniferum HOM05D002293 ORTHO05D005475 3.5e-20 102.8 221 33.9
Dinv19470 Davidia involucrata HOM05D002293 ORTHO05D005475 5.9e-20 102.1 192 33.9
Gohir.D11G228400 Gossypium hirsutum HOM05D002293 ORTHO05D005475 5.9e-20 102.1 186 34.4
PGR102G1541 Punica granatum HOM05D002293 ORTHO05D005475 7.7e-20 101.7 215 33.5
MELO3C007468.2 Cucumis melo HOM05D002293 ORTHO05D005475 1.3e-19 100.9 198 33.8
FvH4_1g22890 Fragaria vesca HOM05D002293 ORTHO05D005475 1.3e-19 100.9 192 32.3
FAN23G0553 Fragaria x ananassa HOM05D002293 ORTHO05D005475 1.3e-19 100.9 199 31.7
Hma1.2p1_0358F.1_g134890 Hydrangea macrophylla HOM05D002293 ORTHO05D005475 1.3e-19 100.9 194 34.5
CANSAT01G0963 Cannabis sativa HOM05D002293 ORTHO05D005475 1.7e-19 100.5 187 33.7
Nn2g12418 Nelumbo nucifera HOM05D002293 ORTHO05D005475 1.7e-19 100.5 157 38.9
AUR62027167 Chenopodium quinoa HOM05D002293 ORTHO05D005475 2.3e-19 100.1 178 33.1
FAN26G3412 Fragaria x ananassa HOM05D002293 ORTHO05D005475 2.3e-19 100.1 199 31.2
Glyma.14G174100 Glycine max HOM05D002293 ORTHO05D005475 2.3e-19 100.1 175 36.0
AUR62003295 Chenopodium quinoa HOM05D002293 ORTHO05D005475 2.9e-19 99.8 178 33.1
FAN19G1282 Fragaria x ananassa HOM05D002293 ORTHO05D005475 2.9e-19 99.8 199 31.7
FAN28G2749 Fragaria x ananassa HOM05D002293 ORTHO05D005475 2.9e-19 99.8 199 31.2
COL.COLO4_10988 Corchorus olitorius HOM05D002293 ORTHO05D005475 3.8e-19 99.4 184 33.2
Sc16g0004130 Simmondsia chinensis HOM05D002293 ORTHO05D005475 3.8e-19 99.4 192 34.4
HPP92_010855 Vanilla planifolia HOM05D002293 ORTHO05D005475 5.0e-19 99.0 178 33.1
SGA_v2.0_scaffold54G19692 Striga asiatica HOM05D002293 ORTHO05D005475 8.6e-19 98.2 178 34.8
Nitab4.5_0004252g0010 Nicotiana tabacum HOM05D002293 ORTHO05D005475 1.5e-18 97.4 209 33.5
Lalb_Chr12g0203481 Lupinus albus HOM05D002293 ORTHO05D005475 3.3e-18 96.3 194 34.0
Nitab4.5_0001000g0170 Nicotiana tabacum HOM05D002293 ORTHO05D005475 4.3e-18 95.9 209 32.5
Lalb_Chr07g0184761 Lupinus albus HOM05D002293 ORTHO05D005475 7.2e-18 95.1 200 32.5
DCAR_019970 Daucus carota HOM05D002293 ORTHO05D005475 2.8e-17 93.2 178 33.1
Psat0s281g0080 Pisum sativum HOM05D002293 ORTHO05D005475 4.0e-16 89.4 156 35.3
Sabra05G0070400 Salix brachista HOM05D002293 ORTHO05D005475 2.6e-15 86.7 247 27.9
TAR381G0840 Trochodendron aralioides HOM05D002293 ORTHO05D005475 3.7e-14 82.8 151 33.8
Haze_25047 Corylus avellana HOM05D002293 ORTHO05D005475 6.4e-14 82.0 135 34.1
Oeu061454.1 Olea europaea HOM05D002293 ORTHO05D005475 6.4e-14 82.0 231 28.1
Hund03526 Selenicereus undatus HOM05D002293 ORTHO05D005475 9.2e-13 78.2 200 31.0
TAR625G1205 Trochodendron aralioides HOM05D002293 ORTHO05D005475 9.2e-13 78.2 192 31.8
Peaxi162Scf17813g00005 Petunia axillaris HOM05D002293 ORTHO05D005475 5.9e-12 75.5 135 36.3
Zm00001eb114730 Zea mays HOM05D002293 ORTHO05D005475 5.9e-12 75.5 135 34.1
MCO03G035 Micromonas commoda HOM05D002293 ORTHO05D005475 3.3e-10 69.7 184 28.3
SMO367G0772 Selaginella moellendorffii HOM05D002293 ORTHO05D005475 7.3e-10 68.6 211 27.0
CDE04G0337 Ceratophyllum demersum HOM05D002293 ORTHO05D005475 8.9e-08 61.6 120 32.5
Lalb_Chr13g0296251 Lupinus albus HOM05D002293 ORTHO05D005475 4.9e-06 55.8 85 34.1
vmacro12893 Vaccinium macrocarpon HOM05D002293 ORTHO05D005475 8.3e-06 55.1 136 29.4


User provided reference genes

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