Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g39562 Chara braunii HOM05D006801 ORTHO05D008490 1.5e-126 456.1 216 100.0
SEGI_01937 Sequoiadendron giganteum HOM05D006801 ORTHO05D008490 3.1e-50 202.6 198 49.0
GSVIVG01030332001 Vitis vinifera HOM05D006801 ORTHO05D008490 3.0e-45 186.0 166 49.4
CANSAT35G1909 Cannabis sativa HOM05D006801 ORTHO05D008490 1.1e-44 184.1 166 49.4
Mapoly0003s0041 Marchantia polymorpha HOM05D006801 ORTHO05D008490 3.3e-44 182.6 168 57.1
TWI74G0346 Tripterygium wilfordii HOM05D006801 ORTHO05D008490 7.3e-44 181.4 166 50.6
SMO347G0428 Selaginella moellendorffii HOM05D006801 ORTHO05D008490 9.6e-44 181.0 182 47.8
COL.COLO4_14495 Corchorus olitorius HOM05D006801 ORTHO05D008490 2.1e-43 179.9 165 50.3
Atru.chr8.2288 Acer truncatum HOM05D006801 ORTHO05D008490 3.6e-43 179.1 164 51.2
Gorai.002G264900 Gossypium raimondii HOM05D006801 ORTHO05D008490 8.1e-43 177.9 165 47.3
Cpa.g.sc120.28 Carica papaya HOM05D006801 ORTHO05D008490 1.4e-42 177.2 167 47.9
CiPaw.10G158900 Carya illinoinensis HOM05D006801 ORTHO05D008490 4.0e-42 175.6 166 47.6
Manes.09G108600 Manihot esculenta HOM05D006801 ORTHO05D008490 4.0e-42 175.6 163 49.7
QL07p034435 Quercus lobata HOM05D006801 ORTHO05D008490 4.0e-42 175.6 166 49.4
Thecc.05G010700 Theobroma cacao HOM05D006801 ORTHO05D008490 6.9e-42 174.9 160 50.6
Gohir.A01G228300 Gossypium hirsutum HOM05D006801 ORTHO05D008490 8.9e-42 174.5 165 46.7
Ciclev10012687m.g Citrus clementina HOM05D006801 ORTHO05D008490 1.2e-41 174.1 166 47.6
arahy.Tifrunner.gnm1.ann1.711CF1 Arachis hypogaea HOM05D006801 ORTHO05D008490 2.0e-41 173.3 164 48.2
Haze_21041 Corylus avellana HOM05D006801 ORTHO05D008490 2.0e-41 173.3 166 48.2
HanXRQChr10g0291491 Helianthus annuus HOM05D006801 ORTHO05D008490 2.0e-41 173.3 163 46.0
Cc06_g01030 Coffea canephora HOM05D006801 ORTHO05D008490 2.6e-41 172.9 169 47.3
Eucgr.A00595 Eucalyptus grandis HOM05D006801 ORTHO05D008490 2.6e-41 172.9 166 47.6
MD04G1161900 Malus domestica HOM05D006801 ORTHO05D008490 2.6e-41 172.9 165 47.3
Gohir.A04G094200 Gossypium hirsutum HOM05D006801 ORTHO05D008490 5.8e-41 171.8 161 49.1
Gorai.012G117400 Gossypium raimondii HOM05D006801 ORTHO05D008490 7.6e-41 171.4 162 48.8
Gohir.D04G133600 Gossypium hirsutum HOM05D006801 ORTHO05D008490 9.9e-41 171.0 162 48.8
arahy.Tifrunner.gnm1.ann1.SWS1EB Arachis hypogaea HOM05D006801 ORTHO05D008490 1.7e-40 170.2 164 47.0
Psat7g243680 Pisum sativum HOM05D006801 ORTHO05D008490 1.7e-40 170.2 166 44.6
CAN.G41.4 Capsicum annuum HOM05D006801 ORTHO05D008490 2.9e-40 169.5 163 49.1
Glyma.03G052200 Glycine max HOM05D006801 ORTHO05D008490 3.8e-40 169.1 167 49.1
Nitab4.5_0005348g0010 Nicotiana tabacum HOM05D006801 ORTHO05D008490 3.8e-40 169.1 163 49.1
VMungo0331G1898 Vigna mungo HOM05D006801 ORTHO05D008490 4.9e-40 168.7 167 48.5
Peaxi162Scf01132g00023 Petunia axillaris HOM05D006801 ORTHO05D008490 6.4e-40 168.3 163 49.7
Medtr4g017650 Medicago truncatula HOM05D006801 ORTHO05D008490 8.4e-40 167.9 166 47.0
Phvul.010G073500 Phaseolus vulgaris HOM05D006801 ORTHO05D008490 8.4e-40 167.9 164 49.4
Prupe.6G281700 Prunus persica HOM05D006801 ORTHO05D008490 1.1e-39 167.5 166 44.6
DCAR_028865 Daucus carota HOM05D006801 ORTHO05D008490 1.4e-39 167.2 166 45.8
TAR140G0003 Trochodendron aralioides HOM05D006801 ORTHO05D008490 1.4e-39 167.2 165 47.3
TAR623G0428 Trochodendron aralioides HOM05D006801 ORTHO05D008490 1.4e-39 167.2 165 47.3
Lsat_1_v5_gn_9_35501 Lactuca sativa HOM05D006801 ORTHO05D008490 1.9e-39 166.8 166 44.6
Lj2A70T41 Lonicera japonica HOM05D006801 ORTHO05D008490 1.9e-39 166.8 167 47.3
CsaV3_3G033500 Cucumis sativus L. HOM05D006801 ORTHO05D008490 3.2e-39 166.0 164 47.6
THA.LOC104816206 Tarenaya hassleriana HOM05D006801 ORTHO05D008490 3.2e-39 166.0 166 45.8
Glyma.01G123100 Glycine max HOM05D006801 ORTHO05D008490 5.4e-39 165.2 167 47.9
ClCG10G022380 Citrullus lanatus HOM05D006801 ORTHO05D008490 1.2e-38 164.1 164 47.6
Lalb_Chr12g0207061 Lupinus albus HOM05D006801 ORTHO05D008490 1.2e-38 164.1 166 45.2
Potri.016G121000 Populus trichocarpa HOM05D006801 ORTHO05D008490 1.6e-38 163.7 159 48.4
MELO3C009141.2 Cucumis melo HOM05D006801 ORTHO05D008490 2.1e-38 163.3 164 47.0
Aqoxy4G02453 Aquilegia oxysepala HOM05D006801 ORTHO05D008490 2.7e-38 162.9 167 46.1
ECA247G2271 Erigeron canadensis HOM05D006801 ORTHO05D008490 3.5e-38 162.5 166 44.6
RcHm_v2.0_Chr3g0462371 Rosa chinensis HOM05D006801 ORTHO05D008490 3.5e-38 162.5 167 44.3
Aa31LG1G22920 Aethionema arabicum HOM05D006801 ORTHO05D008490 4.6e-38 162.2 159 47.8
Cfa017164 Carpinus fangiana HOM05D006801 ORTHO05D008490 4.6e-38 162.2 166 45.8
TPR.G8225 Trifolium pratense HOM05D006801 ORTHO05D008490 4.6e-38 162.2 166 44.6
PGR031G3867 Punica granatum HOM05D006801 ORTHO05D008490 7.8e-38 161.4 166 45.8
Lj3g0017579 Lotus japonicus HOM05D006801 ORTHO05D008490 1.0e-37 161.0 166 44.0
FvH4_6g11060 Fragaria vesca HOM05D006801 ORTHO05D008490 3.0e-37 159.5 167 43.1
FAN14G3154 Fragaria x ananassa HOM05D006801 ORTHO05D008490 3.0e-37 159.5 167 43.1
Pp3c1_41520 Physcomitrium patens HOM05D006801 ORTHO05D008490 3.0e-37 159.5 189 43.9
Ca_20198_v3 Cicer arietinum L. HOM05D006801 ORTHO05D008490 3.9e-37 159.1 166 42.2
Sc01g0005740 Simmondsia chinensis HOM05D006801 ORTHO05D008490 1.1e-36 157.5 168 44.0
Oeu033563.1 Olea europaea HOM05D006801 ORTHO05D008490 1.5e-36 157.1 167 43.7
MSTRG.18989 Avicennia marina HOM05D006801 ORTHO05D008490 1.9e-36 156.8 166 43.4
Nn2g13198 Nelumbo nucifera HOM05D006801 ORTHO05D008490 1.9e-36 156.8 167 43.1
Os05g0468800 Oryza sativa ssp. japonica HOM05D006801 ORTHO05D008490 2.5e-36 156.4 152 47.4
Pp3c21_8040 Physcomitrium patens HOM05D006801 ORTHO05D008490 2.5e-36 156.4 187 44.9
MBI15_g30116_MAGBIO Magnolia biondii HOM05D006801 ORTHO05D008490 4.3e-36 155.6 144 50.0
CARHR211660 Cardamine hirsuta HOM05D006801 ORTHO05D008490 5.6e-36 155.2 161 46.0
Migut.J00126 Erythranthe guttata HOM05D006801 ORTHO05D008490 1.3e-35 154.1 165 42.4
AL6G10870 Arabidopsis lyrata HOM05D006801 ORTHO05D008490 1.6e-35 153.7 159 45.3
SGA_v2.0_scaffold85G26712 Striga asiatica HOM05D000053 ORTHO05D008490 2.8e-35 152.9 167 44.3
Carub.0006s0052 Capsella rubella HOM05D006801 ORTHO05D008490 3.6e-35 152.5 159 45.3
AUR62030790 Chenopodium quinoa HOM05D006801 ORTHO05D008490 3.6e-35 152.5 167 43.7
AT5G01300 Arabidopsis thaliana HOM05D006801 ORTHO05D008490 8.1e-35 151.4 159 44.7
PSO724G0025 Papaver somniferum HOM05D006801 ORTHO05D008490 1.4e-34 150.6 166 45.2
ECA247G3879 Erigeron canadensis HOM05D006801 ORTHO05D008490 2.4e-34 149.8 166 41.6
PSO729G0014 Papaver somniferum HOM05D006801 ORTHO05D008490 2.4e-34 149.8 166 45.2
Sopen09g001050 Solanum pennellii HOM05D006801 ORTHO05D008490 4.0e-34 149.1 159 47.2
Lalb_Chr07g0191271 Lupinus albus HOM05D006801 ORTHO05D008490 6.9e-34 148.3 143 47.6
PSO170G1048 Papaver somniferum HOM05D006801 ORTHO05D008490 6.9e-34 148.3 166 43.4
Solyc09g005060.3 Solanum lycopersicum HOM05D006801 ORTHO05D008490 6.9e-34 148.3 159 47.2
CSS0028234 Camellia sinensis var. sinensis HOM05D006801 ORTHO05D008490 9.0e-34 147.9 167 44.3
EL10Ac5g12521 Beta vulgaris HOM05D006801 ORTHO05D008490 1.2e-33 147.5 152 44.7
Sp6g40620 Schrenkiella parvula HOM05D006801 ORTHO05D008490 2.0e-33 146.7 159 43.4
BraA10t45402Z Brassica rapa HOM05D006801 ORTHO05D008490 2.6e-33 146.4 159 43.4
AUR62030503 Chenopodium quinoa HOM05D006801 ORTHO05D008490 4.5e-33 145.6 167 41.3
SalBow5G2624 Salvia bowleyana HOM05D006801 ORTHO05D008490 9.9e-33 144.4 163 42.9
SalBow5G4248 Salvia bowleyana HOM05D006801 ORTHO05D008490 1.3e-32 144.1 163 42.9
Ah.12g058900 Amaranthus hybridus HOM05D006801 ORTHO05D008490 1.7e-32 143.7 169 41.4
BcaC06g31972 Brassica carinata HOM05D006801 ORTHO05D008490 2.9e-32 142.9 159 42.1
unitig_26.g9083 Utricularia gibba HOM05D006801 ORTHO05D008490 2.9e-32 142.9 157 43.9
FAN09G2180 Fragaria x ananassa HOM05D006801 ORTHO05D008490 2.4e-31 139.8 144 43.8
PSO729G0120 Papaver somniferum HOM05D006801 ORTHO05D008490 3.2e-31 139.4 170 42.9
Zm00001eb351790 Zea mays HOM05D006801 ORTHO05D008490 4.2e-31 139.0 154 42.9
HPP92_026978 Vanilla planifolia HOM05D006801 ORTHO05D008490 7.1e-31 138.3 162 40.7
Thhalv10014869m.g Eutrema salsugineum HOM05D006801 ORTHO05D008490 1.6e-30 137.1 160 45.6
A10p33680 Brassica napus HOM05D005640 ORTHO05D007124 6.0e-30 135.2 133 45.1
C09p74590 Brassica napus HOM05D005640 ORTHO05D007124 1.0e-29 134.4 133 45.1
HPP92_015418 Vanilla planifolia HOM05D006801 ORTHO05D008490 3.0e-29 132.9 162 39.5
Nitab4.5_0000539g0120 Nicotiana tabacum HOM05D006801 ORTHO05D008490 6.7e-29 131.7 115 49.6
Sed0001867 Sechium edule HOM05D006801 ORTHO05D008490 8.7e-29 131.3 168 38.7
AagrBONN_evm.TU.Sc2ySwM_228.3494 Anthoceros agrestis HOM05D006801 ORTHO05D008490 1.3e-27 127.5 134 47.0
Gohir.D01G218200 Gossypium hirsutum HOM05D006801 ORTHO05D008490 1.8e-26 123.6 115 48.7
Dinv18520 Davidia involucrata HOM05D006801 ORTHO05D008490 3.1e-26 122.9 130 46.9
Medtr4g017680 Medicago truncatula HOM05D006801 ORTHO05D008490 4.0e-26 122.5 168 40.5
VMungo0331G1841 Vigna mungo HOM05D006801 ORTHO05D008490 9.0e-26 121.3 166 40.4
Lalb_Chr12g0207091 Lupinus albus HOM05D006801 ORTHO05D008490 1.5e-25 120.6 167 39.5
CDE08G0176 Ceratophyllum demersum HOM05D006801 ORTHO05D008490 3.4e-25 119.4 154 37.7
CSS0011838 Camellia sinensis var. sinensis HOM05D006801 ORTHO05D008490 1.9e-23 113.6 171 38.0
Lj3g0026162 Lotus japonicus HOM05D006801 ORTHO05D008490 1.6e-22 110.5 170 36.5
arahy.Tifrunner.gnm1.ann1.M4T34S Arachis hypogaea HOM05D006801 ORTHO05D008490 6.0e-22 108.6 175 36.6
arahy.Tifrunner.gnm1.ann1.1WC97K Arachis hypogaea HOM05D006801 ORTHO05D008490 9.3e-15 84.7 130 36.9
Ca_20197_v3 Cicer arietinum L. HOM05D006801 ORTHO05D008490 1.3e-13 80.9 166 31.9
Hma1.2p1_0501F.1_g167640 Hydrangea macrophylla HOM05D006801 ORTHO05D008490 2.5e-12 76.6 92 40.2
ATR0681G271 Amborella trichopoda HOM05D006801 ORTHO05D008490 4.3e-12 75.9 86 45.3
PGSC0003DMG400006267 Solanum tuberosum HOM05D006801 ORTHO05D008490 5.7e-12 75.5 85 47.1
ATR0681G235 Amborella trichopoda HOM05D006801 ORTHO05D008490 7.4e-12 75.1 90 38.9
Nitab4.5_0001644g0120 Nicotiana tabacum HOM05D000543 ORTHO05D000396 1.7e-08 63.9 114 33.3
Sc17g0006730 Simmondsia chinensis HOM05D000543 ORTHO05D000396 1.4e-07 60.8 98 39.8
Prupe.1G005200 Prunus persica HOM05D006801 ORTHO05D008490 3.2e-07 59.7 154 28.6
CDE04G2824 Ceratophyllum demersum HOM05D000543 ORTHO05D000396 2.1e-06 57.0 89 36.0
CDE05G0938 Ceratophyllum demersum HOM05D000543 ORTHO05D000396 2.1e-06 57.0 145 31.7
SMO365G0072 Selaginella moellendorffii HOM05D000543 ORTHO05D000396 2.1e-06 57.0 105 36.2
Hund23592 Selenicereus undatus HOM05D000543 ORTHO05D000396 3.6e-06 56.2 96 36.5
Gohir.A05G166400 Gossypium hirsutum HOM05D000543 ORTHO05D000396 4.6e-06 55.8 171 29.8
Sc17g0006720 Simmondsia chinensis HOM05D000543 ORTHO05D000396 4.6e-06 55.8 93 35.5
Actinidia20750 Actinidia chinensis HOM05D006801 ORTHO05D008490 6.1e-06 55.5 63 42.9
Nitab4.5_0001986g0140 Nicotiana tabacum HOM05D000543 ORTHO05D000396 6.1e-06 55.5 131 29.0
Pp3c2_1570 Physcomitrium patens HOM05D000543 ORTHO05D000396 6.1e-06 55.5 125 34.4
EL10Ac8g20548 Beta vulgaris HOM05D000543 ORTHO05D000396 7.9e-06 55.1 98 34.7
CsaV3_1G011710 Cucumis sativus L. HOM05D000543 ORTHO05D000396 7.9e-06 55.1 152 28.9
GSVIVG01003663001 Vitis vinifera HOM05D000543 ORTHO05D000396 7.9e-06 55.1 134 29.9


User provided reference genes

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