Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g39340 Chara braunii HOM05D004948 ORTHO05D005824 9.1e-87 323.6 165 100.0
Mapoly0143s0028 Marchantia polymorpha HOM05D004948 ORTHO05D005824 7.6e-41 171.0 159 56.0
ATR1132G055 Amborella trichopoda HOM05D004948 ORTHO05D005824 3.2e-39 165.6 164 50.6
AagrBONN_evm.TU.Sc2ySwM_362.1882 Anthoceros agrestis HOM05D004948 ORTHO05D005824 7.1e-39 164.5 163 49.7
Pp3c8_900 Physcomitrium patens HOM05D004948 ORTHO05D005824 9.2e-39 164.1 162 53.1
SMO361G0401 Selaginella moellendorffii HOM05D004948 ORTHO05D005824 2.7e-38 162.5 155 56.8
Eucgr.A02670 Eucalyptus grandis HOM05D004948 ORTHO05D005824 6.0e-38 161.4 161 51.6
Ciclev10005800m.g Citrus clementina HOM05D004948 ORTHO05D005824 7.8e-38 161.0 160 50.6
QL09p011186 Quercus lobata HOM05D004948 ORTHO05D005824 3.0e-37 159.1 157 51.6
MBI07_g20438_MAGBIO Magnolia biondii HOM05D004948 ORTHO05D005824 3.9e-37 158.7 161 49.7
Cpa.g.sc3.41 Carica papaya HOM05D004948 ORTHO05D005824 5.1e-37 158.3 161 49.7
CiPaw.06G006800 Carya illinoinensis HOM05D004948 ORTHO05D005824 8.6e-37 157.5 155 51.6
Thecc.03G191700 Theobroma cacao HOM05D004948 ORTHO05D005824 8.6e-37 157.5 157 50.3
Potri.012G033100 Populus trichocarpa HOM05D004948 ORTHO05D005824 1.1e-36 157.1 160 49.4
Duzib068G0205 Durio zibethinus HOM05D004948 ORTHO05D005824 1.5e-36 156.8 157 49.0
Duzib205G0398 Durio zibethinus HOM05D004948 ORTHO05D005824 1.5e-36 156.8 157 49.7
HanXRQChr13g0392981 Helianthus annuus HOM05D004948 ORTHO05D005824 1.5e-36 156.8 165 49.1
Prupe.2G306200 Prunus persica HOM05D004948 ORTHO05D005824 1.9e-36 156.4 157 49.7
RcHm_v2.0_Chr1g0379991 Rosa chinensis HOM05D004948 ORTHO05D005824 1.9e-36 156.4 157 50.3
Cfa016354 Carpinus fangiana HOM05D004948 ORTHO05D005824 2.5e-36 156.0 157 52.2
PGR083G1298 Punica granatum HOM05D004948 ORTHO05D005824 3.3e-36 155.6 161 49.7
GSVIVG01028728001 Vitis vinifera HOM05D004948 ORTHO05D005824 3.3e-36 155.6 157 49.7
PGR042G1790 Punica granatum HOM05D004948 ORTHO05D005824 5.6e-36 154.8 161 49.1
TAR629G2953 Trochodendron aralioides HOM05D004948 ORTHO05D005824 5.6e-36 154.8 157 49.0
AUR62031482 Chenopodium quinoa HOM05D004948 ORTHO05D005824 7.3e-36 154.5 157 49.0
COL.COLO4_04803 Corchorus olitorius HOM05D004948 ORTHO05D005824 7.3e-36 154.5 157 48.4
Sopen03g003430 Solanum pennellii HOM05D004948 ORTHO05D005824 7.3e-36 154.5 161 49.7
AUR62021051 Chenopodium quinoa HOM05D004948 ORTHO05D005824 9.6e-36 154.1 157 49.0
Atru.chr1.284 Acer truncatum HOM05D004948 ORTHO05D005824 1.2e-35 153.7 157 51.0
Actinidia34187 Actinidia chinensis HOM05D004948 ORTHO05D005824 1.2e-35 153.7 161 48.4
FAN10G0469 Fragaria x ananassa HOM05D004948 ORTHO05D005824 1.2e-35 153.7 157 49.0
FAN10G0476 Fragaria x ananassa HOM05D004948 ORTHO05D005824 1.2e-35 153.7 157 49.0
FAN01G0333 Fragaria x ananassa HOM05D004948 ORTHO05D005824 1.6e-35 153.3 157 49.0
FAN06G2108 Fragaria x ananassa HOM05D004948 ORTHO05D005824 1.6e-35 153.3 157 49.0
Hma1.2p1_0142F.1_g064080 Hydrangea macrophylla HOM05D004948 ORTHO05D005824 1.6e-35 153.3 157 48.4
Solyc03g007480.3 Solanum lycopersicum HOM05D004948 ORTHO05D005824 1.6e-35 153.3 161 49.1
PGSC0003DMG400009097 Solanum tuberosum HOM05D004948 ORTHO05D005824 1.6e-35 153.3 158 50.6
EL10Ac3g05356 Beta vulgaris HOM05D004948 ORTHO05D005824 2.1e-35 152.9 157 50.3
CAN.G108.18 Capsicum annuum HOM05D004948 ORTHO05D005824 2.1e-35 152.9 161 47.8
SalBow2G2244 Salvia bowleyana HOM05D004948 ORTHO05D005824 2.1e-35 152.9 157 49.7
Potri.015G023400 Populus trichocarpa HOM05D004948 ORTHO05D005824 2.8e-35 152.5 160 48.8
TAR636G2931 Trochodendron aralioides HOM05D004948 ORTHO05D005824 2.8e-35 152.5 157 51.0
FAN06G4897 Fragaria x ananassa HOM05D004948 ORTHO05D005824 3.6e-35 152.1 157 49.0
Gohir.D12G253100 Gossypium hirsutum HOM05D004948 ORTHO05D005824 3.6e-35 152.1 157 48.4
SGA_v2.0_scaffold10G05268 Striga asiatica HOM05D004948 ORTHO05D005824 3.6e-35 152.1 157 49.0
Migut.F01058 Erythranthe guttata HOM05D004948 ORTHO05D005824 4.7e-35 151.8 157 49.7
Peaxi162Scf00904g00460 Petunia axillaris HOM05D004948 ORTHO05D005824 4.7e-35 151.8 157 51.0
Gorai.008G271400 Gossypium raimondii HOM05D004948 ORTHO05D005824 6.2e-35 151.4 157 47.8
Gohir.A12G252400 Gossypium hirsutum HOM05D004948 ORTHO05D005824 8.1e-35 151.0 157 47.8
arahy.Tifrunner.gnm1.ann1.LZU7FF Arachis hypogaea HOM05D004948 ORTHO05D005824 1.1e-34 150.6 157 47.8
MSTRG.65 Avicennia marina HOM05D004948 ORTHO05D005824 1.1e-34 150.6 154 49.4
Glyma.13G040600 Glycine max HOM05D004948 ORTHO05D005824 1.4e-34 150.2 150 52.0
Lj1g0003063 Lotus japonicus HOM05D004948 ORTHO05D005824 1.8e-34 149.8 156 50.0
ClCG01G000640 Citrullus lanatus HOM05D004948 ORTHO05D005824 2.4e-34 149.4 157 47.1
Sed0002242 Sechium edule HOM05D004948 ORTHO05D005824 2.4e-34 149.4 157 46.5
Dinv28347 Davidia involucrata HOM05D004948 ORTHO05D005824 3.1e-34 149.1 157 47.8
Lsat_1_v5_gn_8_6120 Lactuca sativa HOM05D004948 ORTHO05D005824 4.0e-34 148.7 161 47.8
Lj1g0018821 Lotus japonicus HOM05D004948 ORTHO05D005824 4.0e-34 148.7 157 47.8
CANSAT21G0873 Cannabis sativa HOM05D004948 ORTHO05D005824 6.9e-34 147.9 157 47.1
Haze_00103 Corylus avellana HOM05D004948 ORTHO05D005824 6.9e-34 147.9 172 45.9
MELO3C005865.2 Cucumis melo HOM05D004948 ORTHO05D005824 6.9e-34 147.9 157 45.9
CsaV3_5G000730 Cucumis sativus L. HOM05D004948 ORTHO05D005824 6.9e-34 147.9 157 45.9
Peaxi162Scf00618g00525 Petunia axillaris HOM05D004948 ORTHO05D005824 6.9e-34 147.9 154 48.7
vmacro06582 Vaccinium macrocarpon HOM05D004948 ORTHO05D005824 6.9e-34 147.9 157 48.4
Aqoxy5G04108 Aquilegia oxysepala HOM05D004948 ORTHO05D005824 1.2e-33 147.1 157 46.5
Glyma.06G124800 Glycine max HOM05D004948 ORTHO05D005824 1.2e-33 147.1 160 48.8
Dinv35301 Davidia involucrata HOM05D004948 ORTHO05D005824 1.5e-33 146.7 157 48.4
FvH4_7g30910 Fragaria vesca HOM05D004948 ORTHO05D005824 1.5e-33 146.7 165 46.7
Lalb_Chr08g0240671 Lupinus albus HOM05D004948 ORTHO05D005824 1.5e-33 146.7 160 48.1
CDE04G0161 Ceratophyllum demersum HOM05D004948 ORTHO05D005824 2.6e-33 146.0 161 47.8
ECA233G3864 Erigeron canadensis HOM05D004948 ORTHO05D005824 2.6e-33 146.0 165 45.5
Glyma.04G238900 Glycine max HOM05D004948 ORTHO05D005824 2.6e-33 146.0 156 48.7
MD01G1214200 Malus domestica HOM05D004948 ORTHO05D005824 2.6e-33 146.0 151 48.3
Lalb_Chr04g0263671 Lupinus albus HOM05D004948 ORTHO05D005824 3.4e-33 145.6 157 47.8
PGSC0003DMG400028892 Solanum tuberosum HOM05D004948 ORTHO05D005824 3.4e-33 145.6 154 48.7
Manes.06G156200 Manihot esculenta HOM05D004948 ORTHO05D005824 4.4e-33 145.2 156 48.1
THA.LOC104800283 Tarenaya hassleriana HOM05D004948 ORTHO05D005824 4.4e-33 145.2 161 44.7
MD07G1283800 Malus domestica HOM05D004948 ORTHO05D005824 5.8e-33 144.8 151 47.7
Gohir.A09G183400 Gossypium hirsutum HOM05D004948 ORTHO05D005824 7.6e-33 144.4 156 46.8
Solyc06g051820.4 Solanum lycopersicum HOM05D004948 ORTHO05D005824 7.6e-33 144.4 154 47.4
Ca_16670_v3 Cicer arietinum L. HOM05D004948 ORTHO05D005824 9.9e-33 144.1 159 48.4
Sopen06g017830 Solanum pennellii HOM05D004948 ORTHO05D005824 1.3e-32 143.7 154 47.4
SEGI_09652 Sequoiadendron giganteum HOM05D004948 ORTHO05D005824 1.7e-32 143.3 136 54.4
Cc02_g01980 Coffea canephora HOM05D004948 ORTHO05D005824 2.2e-32 142.9 162 48.1
Oeu037114.1 Olea europaea HOM05D004948 ORTHO05D005824 2.2e-32 142.9 151 46.4
Sc19g0001090 Simmondsia chinensis HOM05D004948 ORTHO05D005824 2.9e-32 142.5 160 44.4
TWI23G0483 Tripterygium wilfordii HOM05D004948 ORTHO05D005824 3.8e-32 142.1 161 44.7
Gohir.D09G178100 Gossypium hirsutum HOM05D004948 ORTHO05D005824 4.9e-32 141.7 156 46.2
Gorai.006G200200 Gossypium raimondii HOM05D004948 ORTHO05D005824 4.9e-32 141.7 156 46.2
Rhsim03G0197700 Rhododendron simsii HOM05D004948 ORTHO05D005824 6.4e-32 141.4 151 47.7
Os01g0621700 Oryza sativa ssp. japonica HOM05D004948 ORTHO05D005824 8.4e-32 141.0 157 46.5
Phvul.009G135700 Phaseolus vulgaris HOM05D004948 ORTHO05D005824 8.4e-32 141.0 160 45.6
HPP92_024433 Vanilla planifolia HOM05D004948 ORTHO05D005824 8.4e-32 141.0 153 45.8
Zm00001eb432120 Zea mays HOM05D004948 ORTHO05D005824 1.1e-31 140.6 152 48.7
Actinidia31860 Actinidia chinensis HOM05D004948 ORTHO05D005824 2.4e-31 139.4 154 49.4
Thhalv10014692m.g Eutrema salsugineum HOM05D004948 ORTHO05D005824 2.4e-31 139.4 160 40.6
BcaB05g22031 Brassica carinata HOM05D004948 ORTHO05D005824 4.2e-31 138.7 160 41.2
Aa31LG5G23580 Aethionema arabicum HOM05D004948 ORTHO05D005824 5.4e-31 138.3 156 42.3
DCAR_010636 Daucus carota HOM05D004948 ORTHO05D005824 5.4e-31 138.3 156 45.5
Psat0s97g0080 Pisum sativum HOM05D004948 ORTHO05D005824 7.1e-31 137.9 156 46.8
TPR.G33862 Trifolium pratense HOM05D004948 ORTHO05D005824 7.1e-31 137.9 158 46.8
Aa31sc29G60 Aethionema arabicum HOM05D004948 ORTHO05D005824 1.6e-30 136.7 156 42.3
AT5G53310 Arabidopsis thaliana HOM05D004948 ORTHO05D005824 1.6e-30 136.7 155 40.6
arahy.Tifrunner.gnm1.ann1.NIM4HJ Arachis hypogaea HOM05D004948 ORTHO05D005824 1.6e-30 136.7 163 42.9
Medtr3g090670 Medicago truncatula HOM05D004948 ORTHO05D005824 2.1e-30 136.3 155 49.0
VMungo1309G3087 Vigna mungo HOM05D004948 ORTHO05D005824 2.1e-30 136.3 160 43.8
AL8G28010 Arabidopsis lyrata HOM05D004948 ORTHO05D005824 2.7e-30 136.0 155 40.6
Carub.0008s1349 Capsella rubella HOM05D004948 ORTHO05D005824 2.7e-30 136.0 155 40.6
BcaC03g14431 Brassica carinata HOM05D004948 ORTHO05D005824 3.5e-30 135.6 160 40.6
C02p18470 Brassica napus HOM05D004948 ORTHO05D005824 3.5e-30 135.6 160 40.6
BolC2t07987H Brassica oleracea HOM05D004948 ORTHO05D005824 3.5e-30 135.6 160 40.6
Sp6g15460 Schrenkiella parvula HOM05D004948 ORTHO05D005824 3.5e-30 135.6 160 40.0
Aa31LG3G9220 Aethionema arabicum HOM05D004948 ORTHO05D005824 4.6e-30 135.2 155 40.6
Nn2g13651 Nelumbo nucifera HOM05D004948 ORTHO05D005824 4.6e-30 135.2 131 52.7
CAN.G204.5 Capsicum annuum HOM05D004948 ORTHO05D005824 6.0e-30 134.8 157 45.2
A02p11140 Brassica napus HOM05D004948 ORTHO05D005824 7.8e-30 134.4 160 40.6
BraA02t06177Z Brassica rapa HOM05D004948 ORTHO05D005824 7.8e-30 134.4 160 40.6
CARHR266350 Cardamine hirsuta HOM05D004948 ORTHO05D005824 7.8e-30 134.4 155 40.6
FAN03G1348 Fragaria x ananassa HOM05D004948 ORTHO05D005824 1.0e-29 134.0 157 45.2
DCAR_008996 Daucus carota HOM05D002473 ORTHO05D005824 1.3e-29 133.7 154 44.8
DCAR_014528 Daucus carota HOM05D000121 ORTHO05D005824 3.0e-29 132.5 160 41.9
Duzib084G1367 Durio zibethinus HOM05D004948 ORTHO05D005824 5.1e-29 131.7 157 44.6
arahy.Tifrunner.gnm1.ann1.AMC2P5 Arachis hypogaea HOM05D004948 ORTHO05D005824 1.9e-28 129.8 171 39.8
Manes.14G019200 Manihot esculenta HOM05D004948 ORTHO05D005824 4.3e-28 128.6 150 44.7
Lj3A912T42 Lonicera japonica HOM05D004948 ORTHO05D005824 7.3e-28 127.9 131 51.9
Hund27721 Selenicereus undatus HOM05D004948 ORTHO05D005824 7.3e-28 127.9 172 42.4
Hund27734 Selenicereus undatus HOM05D004948 ORTHO05D005824 7.3e-28 127.9 172 42.4
TWI39G0355 Tripterygium wilfordii HOM05D004948 ORTHO05D005824 7.3e-28 127.9 135 49.6
Nitab4.5_0001331g0180 Nicotiana tabacum HOM05D004948 ORTHO05D005824 9.6e-28 127.5 131 51.1
Ah.07g206090 Amaranthus hybridus HOM05D004948 ORTHO05D005824 1.3e-27 127.1 136 47.8
Nitab4.5_0000472g0200 Nicotiana tabacum HOM05D004948 ORTHO05D005824 1.3e-27 127.1 131 50.4
Sabra12G0022300 Salix brachista HOM05D004948 ORTHO05D005824 1.6e-27 126.7 130 50.0
arahy.Tifrunner.gnm1.ann1.MD6354 Arachis hypogaea HOM05D004948 ORTHO05D005824 2.1e-27 126.3 131 47.3
unitig_747.g21853 Utricularia gibba HOM05D004948 ORTHO05D005824 1.4e-26 123.6 154 43.5
Actinidia08617 Actinidia chinensis HOM05D004948 ORTHO05D005824 2.0e-25 119.8 147 46.3
Nitab4.5_0002176g0030 Nicotiana tabacum HOM05D004948 ORTHO05D005824 2.0e-25 119.8 128 49.2
CSS0002011 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 3.4e-25 119.0 115 53.9
SHI54648 Sapria himalayana HOM05D004948 ORTHO05D005824 1.3e-24 117.1 154 46.1
SHI54754 Sapria himalayana HOM05D004948 ORTHO05D005824 1.3e-24 117.1 154 46.1
CSS0025713 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 2.3e-21 106.3 109 52.3
CSS0008262 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 3.0e-21 105.9 109 52.3
Lj1P1012T60 Lonicera japonica HOM05D004948 ORTHO05D005824 1.3e-19 100.5 109 46.8
MCO05G504 Micromonas commoda HOM05D004948 ORTHO05D005824 1.3e-16 90.5 185 32.4
BcaC04g20470 Brassica carinata HOM05D004948 ORTHO05D005824 5.3e-10 68.6 147 29.9
BolC9t57186H Brassica oleracea HOM05D004948 ORTHO05D005824 1.7e-08 63.5 147 28.6
C09p43150 Brassica napus HOM05D004948 ORTHO05D005824 8.4e-08 61.2 137 29.2
Lalb_Chr23g0271431 Lupinus albus HOM05D004948 ORTHO05D005824 5.5e-07 58.5 156 27.6
BcaB08g35692 Brassica carinata HOM05D004948 ORTHO05D005824 4.6e-06 55.5 68 36.8


User provided reference genes

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