Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g39203 Chara braunii HOM05D004485 ORTHO05D005485 4.1e-300 1034.2 651 100.0
SEGI_40884 Sequoiadendron giganteum HOM05D004485 ORTHO05D005485 2.8e-78 297.4 416 45.9
ATR0705G155 Amborella trichopoda HOM05D004485 ORTHO05D005485 3.7e-75 287.0 456 44.3
AagrBONN_evm.TU.Sc2ySwM_368.430 Anthoceros agrestis HOM05D004485 ORTHO05D005485 4.1e-74 283.5 496 40.9
MBI07_g22518_MAGBIO Magnolia biondii HOM05D004485 ORTHO05D005485 3.5e-73 280.4 454 42.7
Sed0011847 Sechium edule HOM05D004485 ORTHO05D005485 8.6e-72 275.8 433 41.6
Hma1.2p1_0571F.1_g180870 Hydrangea macrophylla HOM05D004485 ORTHO05D005485 4.3e-71 273.5 433 42.7
Nn8g39096 Nelumbo nucifera HOM05D004485 ORTHO05D005485 7.3e-71 272.7 455 41.5
TAR624G1325 Trochodendron aralioides HOM05D004485 ORTHO05D005485 4.7e-70 270.0 455 40.9
CSS0002032 Camellia sinensis var. sinensis HOM05D004485 ORTHO05D005485 6.2e-70 269.6 428 42.1
ClCG11G002190 Citrullus lanatus HOM05D004485 ORTHO05D005485 1.1e-69 268.9 442 41.2
Actinidia09445 Actinidia chinensis HOM05D004485 ORTHO05D005485 1.4e-69 268.5 429 41.7
Lalb_Chr14g0371821 Lupinus albus HOM05D004485 ORTHO05D005485 3.1e-69 267.3 418 42.3
CiPaw.03G226100 Carya illinoinensis HOM05D004485 ORTHO05D005485 1.5e-68 265.0 418 42.1
Ciclev10007632m.g Citrus clementina HOM05D004485 ORTHO05D005485 2.6e-68 264.2 413 42.6
Duzib168G0844 Durio zibethinus HOM05D004485 ORTHO05D005485 2.6e-68 264.2 454 40.5
Manes.16G110100 Manihot esculenta HOM05D004485 ORTHO05D005485 2.6e-68 264.2 485 38.6
GSVIVG01015314001 Vitis vinifera HOM05D004485 ORTHO05D005485 4.4e-68 263.5 643 34.5
EL10Ac8g18398 Beta vulgaris HOM05D004485 ORTHO05D005485 5.8e-68 263.1 595 35.5
QL02p042072 Quercus lobata HOM05D004485 ORTHO05D005485 7.5e-68 262.7 418 41.6
Sc08g0007920 Simmondsia chinensis HOM05D004485 ORTHO05D005485 7.5e-68 262.7 476 39.5
Sabra18G0074900 Salix brachista HOM05D004485 ORTHO05D005485 1.7e-67 261.5 438 41.6
Dinv36695 Davidia involucrata HOM05D004485 ORTHO05D005485 2.2e-67 261.2 576 35.6
Nitab4.5_0000566g0170 Nicotiana tabacum HOM05D004485 ORTHO05D005485 2.2e-67 261.2 457 41.1
Potri.018G086600 Populus trichocarpa HOM05D004485 ORTHO05D005485 2.2e-67 261.2 417 42.2
Prupe.7G221400 Prunus persica HOM05D004485 ORTHO05D005485 2.9e-67 260.8 413 42.4
BolC9t54403H Brassica oleracea HOM05D004485 ORTHO05D005485 3.7e-67 260.4 579 35.1
MELO3C004583.2 Cucumis melo HOM05D004485 ORTHO05D005485 3.7e-67 260.4 456 40.4
CAN.G1642.10 Capsicum annuum HOM05D004485 ORTHO05D005485 1.4e-66 258.5 449 41.0
C09p15010 Brassica napus HOM05D004485 ORTHO05D005485 1.9e-66 258.1 532 36.1
Gorai.004G281700 Gossypium raimondii HOM05D004485 ORTHO05D005485 1.9e-66 258.1 429 41.0
Thhalv10001922m.g Eutrema salsugineum HOM05D004485 ORTHO05D005485 2.4e-66 257.7 451 39.2
Sopen12g003350 Solanum pennellii HOM05D004485 ORTHO05D005485 3.2e-66 257.3 450 40.4
Gohir.D08G263700 Gossypium hirsutum HOM05D004485 ORTHO05D005485 5.4e-66 256.5 429 41.0
AL3G48250 Arabidopsis lyrata HOM05D004485 ORTHO05D005485 7.0e-66 256.1 456 40.6
Thecc.09G101900 Theobroma cacao HOM05D004485 ORTHO05D005485 7.0e-66 256.1 466 39.7
Actinidia17528 Actinidia chinensis HOM05D004485 ORTHO05D005485 9.2e-66 255.8 429 39.9
Atru.chr7.1446 Acer truncatum HOM05D004485 ORTHO05D005485 1.2e-65 255.4 603 35.5
Migut.K00530 Erythranthe guttata HOM05D004485 ORTHO05D005485 1.2e-65 255.4 530 36.6
MD02G1064300 Malus domestica HOM05D004485 ORTHO05D005485 2.1e-65 254.6 647 33.5
CsaV3_2G001970 Cucumis sativus L. HOM05D004485 ORTHO05D005485 3.5e-65 253.8 577 35.5
A09p12650 Brassica napus HOM05D004485 ORTHO05D005485 6.0e-65 253.1 567 35.4
BraA09t36912Z Brassica rapa HOM05D004485 ORTHO05D005485 6.0e-65 253.1 567 35.4
Glyma.16G077500 Glycine max HOM05D004485 ORTHO05D005485 7.8e-65 252.7 633 33.3
CANSAT56G2449 Cannabis sativa HOM05D004485 ORTHO05D005485 1.3e-64 251.9 597 34.7
HPP92_005563 Vanilla planifolia HOM05D004485 ORTHO05D005485 3.9e-64 250.4 424 40.3
Nitab4.5_0013389g0010 Nicotiana tabacum HOM05D004485 ORTHO05D005485 5.1e-64 250.0 485 38.6
BcaNung04089 Brassica carinata HOM05D004485 ORTHO05D005485 1.1e-63 248.8 418 39.7
Glyma.01G008900 Glycine max HOM05D004485 ORTHO05D005485 1.1e-63 248.8 634 32.6
Solyc12g008390.3 Solanum lycopersicum HOM05D004485 ORTHO05D005485 1.1e-63 248.8 652 34.4
MSTRG.26380 Avicennia marina HOM05D004485 ORTHO05D005485 2.5e-63 247.7 668 33.4
CiPaw.04G158800 Carya illinoinensis HOM05D004485 ORTHO05D005485 2.5e-63 247.7 428 40.0
ECA236G0540 Erigeron canadensis HOM05D004485 ORTHO05D005485 3.3e-63 247.3 413 41.4
MD15G1195100 Malus domestica HOM05D004485 ORTHO05D005485 3.3e-63 247.3 650 33.4
Os01g0744400 Oryza sativa ssp. japonica HOM05D004485 ORTHO05D005485 3.3e-63 247.3 629 34.0
Lalb_Chr24g0397331 Lupinus albus HOM05D004485 ORTHO05D005485 7.3e-63 246.1 418 40.7
TWI34G0799 Tripterygium wilfordii HOM05D004485 ORTHO05D005485 2.1e-62 244.6 458 39.5
Oeu053166.1 Olea europaea HOM05D004485 ORTHO05D005485 2.8e-62 244.2 418 40.9
CSS0009570 Camellia sinensis var. sinensis HOM05D004485 ORTHO05D005485 6.2e-62 243.0 428 39.7
AUR62021427 Chenopodium quinoa HOM05D004485 ORTHO05D005485 6.2e-62 243.0 457 38.1
Zm00001eb153530 Zea mays HOM05D004485 ORTHO05D005485 1.1e-61 242.3 413 40.9
Zm00001eb371090 Zea mays HOM05D004485 ORTHO05D005485 2.3e-61 241.1 413 40.4
Eucgr.C01004 Eucalyptus grandis HOM05D004485 ORTHO05D005485 5.2e-61 240.0 679 33.0
AT2G19950 Arabidopsis thaliana HOM05D004485 ORTHO05D005485 8.9e-61 239.2 636 33.8
Gohir.A06G066600 Gossypium hirsutum HOM05D004485 ORTHO05D005485 1.2e-60 238.8 413 40.4
Carub.0003s3420 Capsella rubella HOM05D004485 ORTHO05D005485 1.5e-60 238.4 456 37.3
Gohir.A08G242800 Gossypium hirsutum HOM05D004485 ORTHO05D005485 1.5e-60 238.4 428 39.3
Gohir.D06G065100 Gossypium hirsutum HOM05D004485 ORTHO05D005485 1.5e-60 238.4 413 42.1
VMungo0464G1472 Vigna mungo HOM05D004485 ORTHO05D005485 2.9e-59 234.2 463 38.4
Duzib187G1416 Durio zibethinus HOM05D004485 ORTHO05D005485 4.9e-59 233.4 454 38.3
FAN19G2910 Fragaria x ananassa HOM05D004485 ORTHO05D005485 8.3e-59 232.6 564 34.8
PSO210G4150 Papaver somniferum HOM05D004485 ORTHO05D005485 7.1e-58 229.6 637 31.4
Phvul.004G170300 Phaseolus vulgaris HOM05D004485 ORTHO05D005485 2.1e-57 228.0 429 38.7
unitig_899.g15433 Utricularia gibba HOM05D004485 ORTHO05D005485 2.1e-57 228.0 432 38.2
CDE04G3494 Ceratophyllum demersum HOM05D004485 ORTHO05D005485 4.6e-57 226.9 418 38.8
arahy.Tifrunner.gnm1.ann1.N3ID59 Arachis hypogaea HOM05D004485 ORTHO05D005485 6.0e-57 226.5 438 37.9
COL.COLO4_34764 Corchorus olitorius HOM05D004485 ORTHO05D005485 6.0e-57 226.5 466 37.1
Haze_25812 Corylus avellana HOM05D004485 ORTHO05D005485 1.7e-56 224.9 602 32.6
vmacro10859 Vaccinium macrocarpon HOM05D004485 ORTHO05D005485 1.1e-55 222.2 402 38.8
SGA_v2.0_scaffold129G34191 Striga asiatica HOM05D004485 ORTHO05D005485 2.5e-55 221.1 381 39.9
Aa31LG8G16840 Aethionema arabicum HOM05D004485 ORTHO05D005485 5.6e-55 219.9 657 31.5
Lj2g0014691 Lotus japonicus HOM05D004485 ORTHO05D005485 9.5e-55 219.2 466 36.9
arahy.Tifrunner.gnm1.ann1.8771PM Arachis hypogaea HOM05D004485 ORTHO05D005485 1.6e-54 218.4 419 37.5
Lsat_1_v5_gn_8_96840 Lactuca sativa HOM05D004485 ORTHO05D005485 2.8e-54 217.6 451 37.0
Rhsim05G0040900 Rhododendron simsii HOM05D004485 ORTHO05D005485 3.6e-54 217.2 586 31.6
BcaC04g22803 Brassica carinata HOM05D004485 ORTHO05D005485 4.7e-54 216.9 439 37.1
PGR102G0995 Punica granatum HOM05D004485 ORTHO05D005485 8.1e-54 216.1 418 37.8
Peaxi162Scf00665g00331 Petunia axillaris HOM05D004485 ORTHO05D005485 2.4e-53 214.5 423 37.6
Psat1g046640 Pisum sativum HOM05D004485 ORTHO05D005485 2.4e-53 214.5 641 32.1
Aqoxy7G03881 Aquilegia oxysepala HOM05D004485 ORTHO05D005485 2.6e-52 211.1 640 31.6
PSO210G3171 Papaver somniferum HOM05D004485 ORTHO05D005485 3.8e-51 207.2 636 30.5
CARHR110390 Cardamine hirsuta HOM05D004485 ORTHO05D005485 2.1e-49 201.4 642 30.5
Cc06_g10330 Coffea canephora HOM05D004485 ORTHO05D005485 2.3e-48 198.0 271 46.1
MBI01_g35400_MAGBIO Magnolia biondii HOM05D004485 ORTHO05D005485 1.9e-47 194.9 749 28.6
Hund29368 Selenicereus undatus HOM05D004485 ORTHO05D005485 1.2e-46 192.2 228 49.6
FAN26G0748 Fragaria x ananassa HOM05D004485 ORTHO05D005485 3.6e-46 190.7 564 32.6
Ca_25562_v3 Cicer arietinum L. HOM05D004485 ORTHO05D005485 8.1e-46 189.5 418 36.1
Hund29369 Selenicereus undatus HOM05D004485 ORTHO05D005485 1.1e-45 189.1 228 49.1
TPR.G21387 Trifolium pratense HOM05D004485 ORTHO05D005485 1.1e-45 189.1 418 36.1
RcHm_v2.0_Chr2g0091661 Rosa chinensis HOM05D004485 ORTHO05D005485 1.4e-45 188.7 615 31.5
Medtr6g088595 Medicago truncatula HOM05D004485 ORTHO05D005485 1.8e-45 188.3 418 35.9
Sp3g33270 Schrenkiella parvula HOM05D004485 ORTHO05D005485 9.0e-45 186.0 499 32.3
FvH4_1g05970 Fragaria vesca HOM05D004485 ORTHO05D005485 2.6e-44 184.5 564 32.1
FAN28G2435 Fragaria x ananassa HOM05D004485 ORTHO05D005485 2.6e-44 184.5 574 31.7
Gorai.010G076200 Gossypium raimondii HOM05D004485 ORTHO05D005485 3.4e-44 184.1 442 34.6
HanXRQChr12g0358161 Helianthus annuus HOM05D004485 ORTHO05D005485 3.4e-44 184.1 412 36.2
arahy.Tifrunner.gnm1.ann1.96JC9B Arachis hypogaea HOM05D004485 ORTHO05D005485 4.4e-44 183.7 438 33.6
FAN26G2333 Fragaria x ananassa HOM05D004485 ORTHO05D005485 9.9e-44 182.6 568 31.3
AUR62010900 Chenopodium quinoa HOM05D004485 ORTHO05D005485 1.3e-43 182.2 418 34.7
SMO356G0242 Selaginella moellendorffii HOM05D004485 ORTHO05D005485 1.7e-43 181.8 564 32.4
THA.LOC104820040 Tarenaya hassleriana HOM05D004485 ORTHO05D005485 3.8e-43 180.6 452 34.5
arahy.Tifrunner.gnm1.ann1.TC5UZA Arachis hypogaea HOM05D004485 ORTHO05D005485 2.1e-41 174.9 437 32.5
Ah.14g083300 Amaranthus hybridus HOM05D004485 ORTHO05D005485 3.5e-41 174.1 404 34.4
FAN23G2550 Fragaria x ananassa HOM05D004485 ORTHO05D005485 1.8e-37 161.8 574 29.8
SMO140G0037 Selaginella moellendorffii HOM05D004485 ORTHO05D005485 3.2e-34 151.0 548 35.0
Oeu064194.1 Olea europaea HOM05D004485 ORTHO05D005485 7.4e-31 139.8 166 50.0
Actinidia39786 Actinidia chinensis HOM05D004485 ORTHO05D005485 8.1e-30 136.3 177 45.8
CDE02G0772 Ceratophyllum demersum HOM05D004485 ORTHO05D005485 4.9e-27 127.1 230 38.7
Oeu064192.1 Olea europaea HOM05D004485 ORTHO05D005485 1.3e-22 112.5 237 35.9
Hund28808 Selenicereus undatus HOM05D004485 ORTHO05D005485 9.0e-21 106.3 131 50.4
Hund28810 Selenicereus undatus HOM05D004485 ORTHO05D005485 9.0e-21 106.3 131 50.4
Actinidia39785 Actinidia chinensis HOM05D004485 ORTHO05D005485 1.3e-19 102.4 131 48.1
Cc06_g10340 Coffea canephora HOM05D004485 ORTHO05D005485 3.8e-19 100.9 165 42.4
SHI02696 Sapria himalayana HOM05D004485 ORTHO05D005485 2.5e-18 98.2 186 36.6
DCAR_012046 Daucus carota HOM05D004485 ORTHO05D005485 6.7e-16 90.1 328 30.5
arahy.Tifrunner.gnm1.ann1.SL9UG3 Arachis hypogaea HOM05D004485 ORTHO05D005485 5.7e-15 87.0 150 38.0
MBI07_g30871_MAGBIO Magnolia biondii HOM05D004485 ORTHO05D005485 8.2e-14 83.2 143 42.7
Cpa.g.sc40.63 Carica papaya HOM05D004485 ORTHO05D005485 1.4e-13 82.4 193 35.8
Sc08g0007940 Simmondsia chinensis HOM05D004485 ORTHO05D005485 1.4e-13 82.4 86 54.7
Cre12.g517500 Chlamydomonas reinhardtii HOM05D004485 ORTHO05D005485 7.2e-10 70.1 433 25.6
Potri.006G164350 Populus trichocarpa HOM05D004485 ORTHO05D005485 1.4e-08 65.9 82 47.6
Cpa.g.sc40.65 Carica papaya HOM05D004485 ORTHO05D005485 1.5e-07 62.4 135 35.6
PRCOL_00000913 Prasinoderma coloniale HOM05D004485 ORTHO05D005485 3.3e-07 61.2 433 24.0
BcaC06g36663 Brassica carinata HOM05D004485 ORTHO05D005485 4.8e-06 57.4 110 34.5


User provided reference genes

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