Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g39177 Chara braunii HOM05D001880 ORTHO05D005098 2.3e-114 415.6 215 100.0
CBR_g40963 Chara braunii HOM05D001880 ORTHO05D005098 1.1e-111 406.8 215 97.2
THA.LOC104815053 Tarenaya hassleriana HOM05D001880 ORTHO05D005098 9.4e-92 340.5 216 79.6
Potri.006G241900 Populus trichocarpa HOM05D001880 ORTHO05D005098 6.1e-91 337.8 216 79.6
Thhalv10014652m.g Eutrema salsugineum HOM05D001880 ORTHO05D005098 3.0e-90 335.5 216 78.2
Ciclev10009455m.g Citrus clementina HOM05D001880 ORTHO05D005098 3.9e-90 335.1 216 78.7
Carub.0006s0996 Capsella rubella HOM05D001880 ORTHO05D005098 5.1e-90 334.7 216 77.8
Mapoly0042s0036 Marchantia polymorpha HOM05D001880 ORTHO05D005098 5.1e-90 334.7 216 78.7
Potri.018G037800 Populus trichocarpa HOM05D001880 ORTHO05D005098 5.1e-90 334.7 216 78.7
Sp6g32100 Schrenkiella parvula HOM05D001880 ORTHO05D005098 5.1e-90 334.7 216 78.2
BcaB08g37053 Brassica carinata HOM05D001880 ORTHO05D005098 8.8e-90 334.0 216 77.8
CARHR201720 Cardamine hirsuta HOM05D001880 ORTHO05D005098 8.8e-90 334.0 216 77.8
AL6G22170 Arabidopsis lyrata HOM05D001880 ORTHO05D005098 1.1e-89 333.6 216 77.3
AT5G11500 Arabidopsis thaliana HOM05D001880 ORTHO05D005098 1.1e-89 333.6 216 77.3
BcaB01g05480 Brassica carinata HOM05D001880 ORTHO05D005098 1.1e-89 333.6 216 77.8
A03p05050 Brassica napus HOM05D001880 ORTHO05D005098 1.1e-89 333.6 216 77.8
A10p26250 Brassica napus HOM05D001880 ORTHO05D005098 1.1e-89 333.6 216 77.3
BraA03t09839Z Brassica rapa HOM05D001880 ORTHO05D005098 1.1e-89 333.6 216 77.8
BraA10t44682Z Brassica rapa HOM05D001880 ORTHO05D005098 1.1e-89 333.6 216 77.3
THA.LOC104799203 Tarenaya hassleriana HOM05D001880 ORTHO05D005098 1.1e-89 333.6 216 78.7
C03p05780 Brassica napus HOM05D001880 ORTHO05D005098 1.5e-89 333.2 216 77.3
BolC3t13091H Brassica oleracea HOM05D001880 ORTHO05D005098 1.5e-89 333.2 216 77.3
arahy.Tifrunner.gnm1.ann1.I4CW6I Arachis hypogaea HOM05D001880 ORTHO05D005098 2.0e-89 332.8 216 77.8
Nn3g18068 Nelumbo nucifera HOM05D001880 ORTHO05D005098 2.0e-89 332.8 216 78.2
Sed0004320 Sechium edule HOM05D001880 ORTHO05D005098 2.0e-89 332.8 216 77.3
vmacro07643 Vaccinium macrocarpon HOM05D001880 ORTHO05D005098 2.0e-89 332.8 216 77.8
Cpa.g.sc78.78 Carica papaya HOM05D001880 ORTHO05D005098 2.6e-89 332.4 216 78.2
arahy.Tifrunner.gnm1.ann1.0TS4QU Arachis hypogaea HOM05D001880 ORTHO05D005098 3.3e-89 332.0 216 77.8
Eucgr.C01583 Eucalyptus grandis HOM05D001880 ORTHO05D005098 3.3e-89 332.0 216 78.7
C09p65340 Brassica napus HOM05D001880 ORTHO05D005098 4.4e-89 331.6 216 76.9
BcaC03g13368 Brassica carinata HOM05D001880 ORTHO05D005098 5.7e-89 331.3 216 77.3
ClCG11G014050 Citrullus lanatus HOM05D001880 ORTHO05D005098 5.7e-89 331.3 216 77.3
MELO3C003579.2 Cucumis melo HOM05D001880 ORTHO05D005098 5.7e-89 331.3 216 77.3
Cc08_g09010 Coffea canephora HOM05D001880 ORTHO05D005098 7.4e-89 330.9 216 78.2
Atru.chr7.2156 Acer truncatum HOM05D001880 ORTHO05D005098 9.7e-89 330.5 216 77.8
CsaV3_3G047450 Cucumis sativus L. HOM05D001880 ORTHO05D005098 9.7e-89 330.5 216 76.9
Duzib150G0439 Durio zibethinus HOM05D001880 ORTHO05D005098 9.7e-89 330.5 216 76.9
Glyma.04G080400 Glycine max HOM05D001880 ORTHO05D005098 9.7e-89 330.5 216 77.8
Sed0015028 Sechium edule HOM05D001880 ORTHO05D005098 9.7e-89 330.5 216 76.9
BcaC04g19219 Brassica carinata HOM05D001880 ORTHO05D005098 1.3e-88 330.1 216 76.4
BolC9t59360H Brassica oleracea HOM05D001880 ORTHO05D005098 1.3e-88 330.1 216 76.4
Gohir.D08G272200 Gossypium hirsutum HOM05D001880 ORTHO05D005098 1.3e-88 330.1 216 77.3
Gorai.004G290600 Gossypium raimondii HOM05D001880 ORTHO05D005098 1.3e-88 330.1 216 77.3
Lj1g0025868 Lotus japonicus HOM05D001880 ORTHO05D005098 1.3e-88 330.1 220 77.3
TWI63G1366 Tripterygium wilfordii HOM05D001880 ORTHO05D005098 1.3e-88 330.1 216 78.7
VMungo1309G0461 Vigna mungo HOM05D001880 ORTHO05D005098 1.3e-88 330.1 215 77.7
Glyma.06G082100 Glycine max HOM05D001880 ORTHO05D005098 1.7e-88 329.7 216 77.3
HanXRQChr07g0188141 Helianthus annuus HOM05D001880 ORTHO05D005098 1.7e-88 329.7 216 77.8
Hma1.2p1_0140F.1_g063500 Hydrangea macrophylla HOM05D001880 ORTHO05D005098 1.7e-88 329.7 216 78.2
Manes.16G065900 Manihot esculenta HOM05D001880 ORTHO05D005098 1.7e-88 329.7 216 76.4
Thecc.09G040200 Theobroma cacao HOM05D001880 ORTHO05D005098 1.7e-88 329.7 216 77.3
PSO210G6462 Papaver somniferum HOM05D001880 ORTHO05D005098 2.2e-88 329.3 216 77.3
Phvul.009G106500 Phaseolus vulgaris HOM05D001880 ORTHO05D005098 2.2e-88 329.3 216 76.9
Psat0s4721g0040 Pisum sativum HOM05D001880 ORTHO05D005098 2.2e-88 329.3 216 77.3
MSTRG.25891 Avicennia marina HOM05D001880 ORTHO05D005098 2.8e-88 328.9 216 78.2
C02p05070 Brassica napus HOM05D001880 ORTHO05D005098 4.8e-88 328.2 216 76.4
CANSAT25G1770 Cannabis sativa HOM05D001880 ORTHO05D005098 4.8e-88 328.2 216 76.9
CiPaw.08G023800 Carya illinoinensis HOM05D001880 ORTHO05D005098 4.8e-88 328.2 216 76.4
PSO210G1422 Papaver somniferum HOM05D001880 ORTHO05D005098 4.8e-88 328.2 216 76.9
Medtr3g110022 Medicago truncatula HOM05D001880 ORTHO05D005098 6.3e-88 327.8 216 77.3
Aqoxy7G01618 Aquilegia oxysepala HOM05D001880 ORTHO05D005098 8.2e-88 327.4 216 77.3
SMO134G0016 Selaginella moellendorffii HOM05D001880 ORTHO05D005098 8.2e-88 327.4 216 75.9
Gohir.A08G250700 Gossypium hirsutum HOM05D001880 ORTHO05D005098 1.1e-87 327.0 216 76.9
MD08G1117900 Malus domestica HOM05D001880 ORTHO05D005098 1.1e-87 327.0 216 77.3
MD15G1097400 Malus domestica HOM05D001880 ORTHO05D005098 1.1e-87 327.0 216 77.3
HPP92_023949 Vanilla planifolia HOM05D001880 ORTHO05D005098 1.1e-87 327.0 216 76.9
CAN.G21.29 Capsicum annuum HOM05D001880 ORTHO05D005098 1.4e-87 326.6 216 76.9
Gohir.D05G049500 Gossypium hirsutum HOM05D001880 ORTHO05D005098 1.4e-87 326.6 216 76.4
CSS0008123 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 1.8e-87 326.2 216 76.9
CSS0050171 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 1.8e-87 326.2 216 76.9
Gohir.A07G023800 Gossypium hirsutum HOM05D001880 ORTHO05D005098 1.8e-87 326.2 216 76.9
ATR0315G044 Amborella trichopoda HOM05D001880 ORTHO05D005098 2.4e-87 325.9 216 76.9
Migut.A00247 Erythranthe guttata HOM05D001880 ORTHO05D005098 2.4e-87 325.9 216 76.9
Pp3c9_4250 Physcomitrium patens HOM05D001880 ORTHO05D005098 2.4e-87 325.9 216 76.4
DCAR_004495 Daucus carota HOM05D001880 ORTHO05D005098 4.1e-87 325.1 216 78.2
Nitab4.5_0007240g0010 Nicotiana tabacum HOM05D001880 ORTHO05D005098 4.1e-87 325.1 216 76.4
PGSC0003DMG400010834 Solanum tuberosum HOM05D001880 ORTHO05D005098 4.1e-87 325.1 216 76.9
Gohir.D07G027400 Gossypium hirsutum HOM05D001880 ORTHO05D005098 5.3e-87 324.7 216 76.4
Lalb_Chr08g0243251 Lupinus albus HOM05D001880 ORTHO05D005098 5.3e-87 324.7 216 75.9
Peaxi162Scf00523g00111 Petunia axillaris HOM05D001880 ORTHO05D005098 5.3e-87 324.7 216 76.4
Gorai.009G050800 Gossypium raimondii HOM05D001880 ORTHO05D005098 7.0e-87 324.3 216 75.9
Hma1.2p1_0422F.1_g150140 Hydrangea macrophylla HOM05D001880 ORTHO05D005098 7.0e-87 324.3 216 75.9
Manes.03G063100 Manihot esculenta HOM05D001880 ORTHO05D005098 7.0e-87 324.3 216 75.9
unitig_748.g7799 Utricularia gibba HOM05D001880 ORTHO05D005098 7.0e-87 324.3 216 76.4
Duzib187G1109 Durio zibethinus HOM05D001880 ORTHO05D005098 9.1e-87 323.9 216 75.9
Lalb_Chr11g0064351 Lupinus albus HOM05D001880 ORTHO05D005098 1.2e-86 323.6 216 75.0
Solyc08g068300.3 Solanum lycopersicum HOM05D001880 ORTHO05D005098 1.2e-86 323.6 216 76.4
Sopen08g022150 Solanum pennellii HOM05D001880 ORTHO05D005098 1.2e-86 323.6 216 76.4
COL.COLO4_18693 Corchorus olitorius HOM05D001880 ORTHO05D005098 1.6e-86 323.2 216 75.9
Dinv14228 Davidia involucrata HOM05D001880 ORTHO05D005098 1.6e-86 323.2 215 74.9
Gorai.001G028600 Gossypium raimondii HOM05D001880 ORTHO05D005098 2.0e-86 322.8 215 75.8
Nn2g11707 Nelumbo nucifera HOM05D001880 ORTHO05D005098 2.0e-86 322.8 216 75.9
Nitab4.5_0000052g0180 Nicotiana tabacum HOM05D001880 ORTHO05D005098 2.0e-86 322.8 214 76.2
Gohir.A05G048200 Gossypium hirsutum HOM05D001880 ORTHO05D005098 2.6e-86 322.4 216 75.0
TWI32G1114 Tripterygium wilfordii HOM05D001880 ORTHO05D005098 2.6e-86 322.4 216 75.9
Cfa013347 Carpinus fangiana HOM05D001880 ORTHO05D005098 3.5e-86 322.0 215 75.3
DCAR_000746 Daucus carota HOM05D001880 ORTHO05D005098 3.5e-86 322.0 216 76.4
Zm00001eb350500 Zea mays HOM05D001880 ORTHO05D005098 3.5e-86 322.0 216 73.1
MSTRG.1651 Avicennia marina HOM05D001880 ORTHO05D005098 5.9e-86 321.2 216 75.9
TAR626G0694 Trochodendron aralioides HOM05D001880 ORTHO05D005098 5.9e-86 321.2 216 75.0
CiPaw.07G206800 Carya illinoinensis HOM05D001880 ORTHO05D005098 1.0e-85 320.5 215 75.3
TAR383G0375 Trochodendron aralioides HOM05D001880 ORTHO05D005098 1.0e-85 320.5 216 75.9
SGA_v2.0_scaffold163G38091 Striga asiatica HOM05D001880 ORTHO05D005098 1.7e-85 319.7 221 75.1
Pp3c9_9290 Physcomitrium patens HOM05D001880 ORTHO05D005098 2.9e-85 318.9 216 75.0
TPR.G1376 Trifolium pratense HOM05D001880 ORTHO05D005098 2.9e-85 318.9 216 75.5
BcaNung01928 Brassica carinata HOM05D001880 ORTHO05D005098 8.5e-85 317.4 221 74.7
PGR044G1166 Punica granatum HOM05D001880 ORTHO05D005098 1.1e-84 317.0 216 74.5
Lalb_Chr23g0269461 Lupinus albus HOM05D001880 ORTHO05D005098 1.9e-84 316.2 216 73.6
SalBow8G4639 Salvia bowleyana HOM05D001880 ORTHO05D005098 1.9e-84 316.2 217 76.0
Prupe.1G452200 Prunus persica HOM05D001880 ORTHO05D005098 3.2e-84 315.5 227 73.6
Aqoxy7G03843 Aquilegia oxysepala HOM05D001880 ORTHO05D005098 5.5e-84 314.7 216 73.1
CDE05G1188 Ceratophyllum demersum HOM05D001880 ORTHO05D005098 8.0e-83 310.8 216 72.7
Hund19544 Selenicereus undatus HOM05D001880 ORTHO05D005098 6.3e-80 301.2 221 71.0
FvH4_2g36060 Fragaria vesca HOM05D001880 ORTHO05D005098 1.1e-79 300.4 216 71.3
RcHm_v2.0_Chr6g0305791 Rosa chinensis HOM05D001880 ORTHO05D005098 1.1e-79 300.4 216 71.3
GSVIVG01035667001 Vitis vinifera HOM05D001880 ORTHO05D005098 1.1e-79 300.4 199 78.4
Aa31LG3G15700 Aethionema arabicum HOM05D001758 ORTHO05D005969 1.8e-79 299.7 216 72.7
BolC2t06461H Brassica oleracea HOM05D001880 ORTHO05D005098 2.7e-78 295.8 218 70.6
ECA246G2183 Erigeron canadensis HOM05D001880 ORTHO05D004730 3.5e-78 295.4 218 69.7
Os01g0750500 Oryza sativa ssp. japonica HOM05D001880 ORTHO05D005098 3.5e-78 295.4 216 68.5
SalBow4G0117 Salvia bowleyana HOM05D001880 ORTHO05D005098 3.5e-78 295.4 216 72.2
Rhsim03G0046500 Rhododendron simsii HOM05D001880 ORTHO05D005098 5.9e-78 294.7 216 71.3
SGA_v2.0_scaffold169G38642 Striga asiatica HOM05D001880 ORTHO05D005098 1.5e-76 290.0 216 70.4
Lj8C597T7 Lonicera japonica HOM05D001880 ORTHO05D005098 4.2e-76 288.5 216 70.4
Dinv30256 Davidia involucrata HOM05D001880 ORTHO05D005098 8.0e-75 284.3 164 84.1
Oeu014654.1 Olea europaea HOM05D001880 ORTHO05D005098 1.0e-74 283.9 216 69.0
QL12p026578 Quercus lobata HOM05D001880 ORTHO05D005098 8.8e-74 280.8 164 81.1
Ca_15617_v3 Cicer arietinum L. HOM05D001880 ORTHO05D005098 9.8e-73 277.3 164 81.7
AUR62009327 Chenopodium quinoa HOM05D001880 ORTHO05D005098 1.3e-72 276.9 216 67.6
Lsat_1_v5_gn_5_34021 Lactuca sativa HOM05D001880 ORTHO05D005098 2.2e-72 276.2 215 67.9
Sc09g0009110 Simmondsia chinensis HOM05D001880 ORTHO05D005098 1.8e-71 273.1 276 55.8
Zm00001eb153360 Zea mays HOM05D001880 ORTHO05D005098 4.5e-70 268.5 217 65.9
FAN27G1491 Fragaria x ananassa HOM05D001880 ORTHO05D005098 2.2e-69 266.2 216 65.3
EL10Ac2g04067 Beta vulgaris HOM05D001880 ORTHO05D005098 3.8e-69 265.4 216 66.2
FAN15G2674 Fragaria x ananassa HOM05D001880 ORTHO05D005098 8.5e-69 264.2 216 64.8
AagrBONN_evm.TU.Sc2ySwM_228.2603 Anthoceros agrestis HOM05D001880 ORTHO05D005098 1.8e-66 256.5 144 81.2
Gorai.011G152300 Gossypium raimondii HOM05D001880 ORTHO05D005098 4.0e-66 255.4 216 62.5
Oeu016233.2 Olea europaea HOM05D001880 ORTHO05D005098 8.8e-66 254.2 216 62.5
PSO832G1756 Papaver somniferum HOM05D001880 ORTHO05D005098 3.4e-65 252.3 217 61.3
Sabra18G0038400 Salix brachista HOM05D001880 ORTHO05D005098 1.4e-63 246.9 164 74.4
MCO11G833 Micromonas commoda HOM05D001880 ORTHO05D005098 9.2e-63 244.2 219 61.2
AUR62023014 Chenopodium quinoa HOM05D000682 ORTHO05D000510 2.9e-61 239.2 196 67.3
PRCOL_00004463 Prasinoderma coloniale HOM05D001880 ORTHO05D005098 6.6e-61 238.0 211 60.7
Ah.10g035220 Amaranthus hybridus HOM05D001880 ORTHO05D005098 5.6e-60 235.0 217 61.3
Haze_21860 Corylus avellana HOM05D001880 ORTHO05D005098 6.1e-59 231.5 164 70.1
Lj8C602T7 Lonicera japonica HOM05D001880 ORTHO05D005098 6.8e-58 228.0 216 59.7
Rhsim03G0044500 Rhododendron simsii HOM05D001880 ORTHO05D005098 1.1e-55 220.7 178 68.5
Cre06.g275300 Chlamydomonas reinhardtii HOM05D001880 ORTHO05D005098 1.7e-48 196.8 153 63.4
Cc00_g02820 Coffea canephora HOM05D001880 ORTHO05D005098 6.6e-45 184.9 108 77.8
Cc03_g15000 Coffea canephora HOM05D001880 ORTHO05D005098 6.6e-45 184.9 108 77.8
Cfa026630 Carpinus fangiana HOM05D004477 ORTHO05D005615 1.5e-44 183.7 204 51.0
Pp3c9_8200 Physcomitrium patens HOM05D001880 ORTHO05D005098 6.4e-40 168.3 106 78.3
MBI04_g19163_MAGBIO Magnolia biondii HOM05D001880 ORTHO05D005098 3.9e-37 159.1 136 66.2
CSS0023199 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 1.5e-36 157.1 248 44.4
HPP92_023929 Vanilla planifolia HOM05D001880 ORTHO05D005098 1.6e-35 153.7 84 82.1
HPP92_023928 Vanilla planifolia HOM05D001880 ORTHO05D005098 1.4e-34 150.6 135 63.7
Lj7A706G42 Lonicera japonica HOM05D001880 ORTHO05D001339 2.3e-34 149.8 117 61.5
Sabra06G0189300 Salix brachista HOM05D001880 ORTHO05D005098 4.4e-33 145.6 81 81.5
Os05g0221400 Oryza sativa ssp. japonica HOM05D001880 ORTHO05D005098 1.1e-31 141.0 81 81.5
Lj7A706T45 Lonicera japonica HOM05D001880 ORTHO05D005098 1.1e-28 131.0 114 67.5
Zm00001eb036010 Zea mays HOM05D001880 ORTHO05D005098 6.9e-26 121.7 101 67.3
Zm00001eb052320 Zea mays HOM05D001880 ORTHO05D005098 6.9e-26 121.7 101 67.3
Zm00001eb071380 Zea mays HOM05D001880 ORTHO05D005098 6.9e-26 121.7 101 67.3
Zm00001eb291550 Zea mays HOM05D001880 ORTHO05D005098 6.9e-26 121.7 101 67.3
Zm00001eb391830 Zea mays HOM05D001880 ORTHO05D005098 6.9e-26 121.7 101 67.3
Cc00_g34580 Coffea canephora HOM05D001880 ORTHO05D005098 5.8e-25 118.6 71 71.8
CSS0036439 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 3.2e-15 86.3 62 72.6
Gorai.011G178000 Gossypium raimondii HOM05D001880 ORTHO05D005098 1.8e-10 70.5 74 59.5
SalBow5G0200 Salvia bowleyana HOM05D001880 ORTHO05D355852 5.8e-09 65.5 48 64.6
SalBow8G1849 Salvia bowleyana HOM05D001880 ORTHO05D363534 5.8e-09 65.5 48 64.6
SalBow8G2043 Salvia bowleyana HOM05D001880 ORTHO05D356500 5.8e-09 65.5 48 64.6
Gorai.011G118500 Gossypium raimondii HOM05D001880 ORTHO05D013650 2.2e-08 63.5 39 64.1
SalBow6G5594 Salvia bowleyana HOM05D001880 ORTHO05D357349 2.2e-08 63.5 48 62.5
Gorai.002G175500 Gossypium raimondii HOM05D001035 ORTHO05D013650 8.4e-08 61.6 39 61.5
Gorai.012G085200 Gossypium raimondii HOM05D001880 ORTHO05D005098 1.1e-07 61.2 68 55.9


User provided reference genes

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