Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g38932 Chara braunii HOM05D003908 ORTHO05D004488 9.3e-66 253.4 132 100.0
Eucgr.B02621 Eucalyptus grandis HOM05D003908 ORTHO05D004488 1.6e-46 189.5 121 76.0
Eucgr.C04384 Eucalyptus grandis HOM05D003908 ORTHO05D004488 1.6e-46 189.5 121 76.0
Pp3c25_8080 Physcomitrium patens HOM05D003908 ORTHO05D004488 6.2e-46 187.6 124 75.0
unitig_22.g5278 Utricularia gibba HOM05D003908 ORTHO05D004488 8.2e-46 187.2 122 74.6
TAR633G1149 Trochodendron aralioides HOM05D003908 ORTHO05D004488 1.4e-45 186.4 121 74.4
CSS0036720 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 1.8e-45 186.0 121 74.4
CSS0040700 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 1.8e-45 186.0 121 74.4
Nn3g19495 Nelumbo nucifera HOM05D003908 ORTHO05D004488 1.8e-45 186.0 117 76.1
SGA_v2.0_scaffold138G35289 Striga asiatica HOM05D003696 ORTHO05D005158 1.8e-45 186.0 122 73.0
PGSC0003DMG400009421 Solanum tuberosum HOM05D003908 ORTHO05D004488 2.4e-45 185.7 117 76.1
Lj1g0011223 Lotus japonicus HOM05D003908 ORTHO05D004488 3.1e-45 185.3 122 73.0
Pp3c6_17470 Physcomitrium patens HOM05D003908 ORTHO05D004488 3.1e-45 185.3 124 73.4
MSTRG.21514 Avicennia marina HOM05D003908 ORTHO05D004488 4.0e-45 184.9 122 73.0
CSS0027656 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 5.3e-45 184.5 121 73.6
Cpa.g.sc117.89 Carica papaya HOM05D003908 ORTHO05D004488 5.3e-45 184.5 121 73.6
Dinv34562 Davidia involucrata HOM05D003908 ORTHO05D004488 5.3e-45 184.5 121 73.6
HPP92_018775 Vanilla planifolia HOM05D003908 ORTHO05D004488 5.3e-45 184.5 121 73.6
Atru.chr2.813 Acer truncatum HOM05D003908 ORTHO05D004488 6.9e-45 184.1 128 70.3
Actinidia19977 Actinidia chinensis HOM05D003908 ORTHO05D004488 6.9e-45 184.1 121 72.7
Actinidia27523 Actinidia chinensis HOM05D003908 ORTHO05D004488 6.9e-45 184.1 121 72.7
CiPaw.08G123800 Carya illinoinensis HOM05D003908 ORTHO05D004488 6.9e-45 184.1 121 72.7
Nitab4.5_0000360g0160 Nicotiana tabacum HOM05D003908 ORTHO05D004488 6.9e-45 184.1 122 72.1
Nitab4.5_0002776g0060 Nicotiana tabacum HOM05D003908 ORTHO05D004488 6.9e-45 184.1 122 72.1
QL03p025800 Quercus lobata HOM05D003908 ORTHO05D004488 6.9e-45 184.1 121 72.7
SalBow3G3620 Salvia bowleyana HOM05D003908 ORTHO05D004488 6.9e-45 184.1 122 71.3
Solyc02g068450.3 Solanum lycopersicum HOM05D003908 ORTHO05D004488 6.9e-45 184.1 117 75.2
Sopen02g017590 Solanum pennellii HOM05D003908 ORTHO05D004488 6.9e-45 184.1 117 75.2
CAN.G1299.5 Capsicum annuum HOM05D003908 ORTHO05D004488 9.0e-45 183.7 122 71.3
SGA_v2.0_scaffold580G53041 Striga asiatica HOM05D006471 ORTHO05D004488 9.0e-45 183.7 122 71.3
GSVIVG01031574001 Vitis vinifera HOM05D003908 ORTHO05D004488 9.0e-45 183.7 121 72.7
Ciclev10002833m.g Citrus clementina HOM05D003908 ORTHO05D004488 1.2e-44 183.3 121 71.9
Migut.D00367 Erythranthe guttata HOM05D003908 ORTHO05D004488 1.2e-44 183.3 117 74.4
Gohir.A08G188000 Gossypium hirsutum HOM05D003908 ORTHO05D004488 1.2e-44 183.3 121 71.9
Gohir.A08G215400 Gossypium hirsutum HOM05D003908 ORTHO05D004488 1.2e-44 183.3 121 71.1
Gohir.D08G206400 Gossypium hirsutum HOM05D003908 ORTHO05D004488 1.2e-44 183.3 121 71.9
Gorai.004G218600 Gossypium raimondii HOM05D003908 ORTHO05D004488 1.2e-44 183.3 121 71.9
Gorai.004G246600 Gossypium raimondii HOM05D003908 ORTHO05D004488 1.2e-44 183.3 121 71.1
Nitab4.5_0000443g0180 Nicotiana tabacum HOM05D003908 ORTHO05D004488 1.2e-44 183.3 122 70.5
THA.LOC104801254 Tarenaya hassleriana HOM05D003908 ORTHO05D004488 1.2e-44 183.3 121 72.7
THA.LOC104825983 Tarenaya hassleriana HOM05D003908 ORTHO05D004488 1.2e-44 183.3 121 72.7
Atru.chr4.2009 Acer truncatum HOM05D003908 ORTHO05D004488 1.5e-44 183.0 128 69.5
arahy.Tifrunner.gnm1.ann1.95Q6AF Arachis hypogaea HOM05D003908 ORTHO05D004488 1.5e-44 183.0 121 72.7
arahy.Tifrunner.gnm1.ann1.Y10HXA Arachis hypogaea HOM05D003908 ORTHO05D004488 1.5e-44 183.0 121 72.7
Cfa006421 Carpinus fangiana HOM05D003908 ORTHO05D004488 1.5e-44 183.0 121 71.9
Ca_18213_v3 Cicer arietinum L. HOM05D003908 ORTHO05D004488 1.5e-44 183.0 121 73.6
Psat7g086640 Pisum sativum HOM05D003908 ORTHO05D004488 1.5e-44 183.0 121 74.4
Potri.005G217600 Populus trichocarpa HOM05D003908 ORTHO05D004488 1.5e-44 183.0 121 73.6
Prupe.5G006500 Prunus persica HOM05D003908 ORTHO05D004488 1.5e-44 183.0 121 71.9
Rhsim01G0201300 Rhododendron simsii HOM05D003908 ORTHO05D004488 1.5e-44 183.0 121 72.7
Actinidia24932 Actinidia chinensis HOM05D005044 ORTHO05D006799 2.0e-44 182.6 115 75.7
Aqoxy5G00367 Aquilegia oxysepala HOM05D003908 ORTHO05D004488 2.0e-44 182.6 121 71.9
arahy.Tifrunner.gnm1.ann1.LT9XWZ Arachis hypogaea HOM05D003908 ORTHO05D004488 2.0e-44 182.6 121 72.7
Duzib106G0327 Durio zibethinus HOM05D003908 ORTHO05D004488 2.0e-44 182.6 123 69.9
Gohir.D13G069500 Gossypium hirsutum HOM05D003908 ORTHO05D004488 2.0e-44 182.6 121 72.7
Gorai.013G079800 Gossypium raimondii HOM05D003908 ORTHO05D004488 2.0e-44 182.6 121 72.7
Hma1.2p1_0760F.1_g214230 Hydrangea macrophylla HOM05D003908 ORTHO05D004488 2.0e-44 182.6 121 71.9
Peaxi162Scf00199g00925 Petunia axillaris HOM05D003908 ORTHO05D004488 2.0e-44 182.6 122 71.3
Aqoxy6G02470 Aquilegia oxysepala HOM05D003908 ORTHO05D004488 2.6e-44 182.2 121 71.9
CSS0040042 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 2.6e-44 182.2 122 70.5
Thecc.01G268300 Theobroma cacao HOM05D003908 ORTHO05D004488 2.6e-44 182.2 121 71.9
Ah.02g111400 Amaranthus hybridus HOM05D003908 ORTHO05D004488 3.4e-44 181.8 123 69.1
ATR0787G044 Amborella trichopoda HOM05D003908 ORTHO05D004488 3.4e-44 181.8 121 71.9
Manes.07G050600 Manihot esculenta HOM05D003908 ORTHO05D004488 3.4e-44 181.8 121 72.7
Mapoly0079s0004 Marchantia polymorpha HOM05D003908 ORTHO05D004488 3.4e-44 181.8 128 71.9
PSO210G0243 Papaver somniferum HOM05D003908 ORTHO05D004488 3.4e-44 181.8 122 73.8
PSO832G4196 Papaver somniferum HOM05D003908 ORTHO05D004488 3.4e-44 181.8 122 73.8
CANSAT21G0496 Cannabis sativa HOM05D003908 ORTHO05D004488 4.5e-44 181.4 121 71.1
FvH4_6g02960 Fragaria vesca HOM05D003908 ORTHO05D004488 4.5e-44 181.4 116 74.1
FAN05G0658 Fragaria x ananassa HOM05D003908 ORTHO05D004488 4.5e-44 181.4 116 74.1
Gohir.A13G052900 Gossypium hirsutum HOM05D003908 ORTHO05D004488 4.5e-44 181.4 121 71.9
MBI10_g16831_MAGBIO Magnolia biondii HOM05D003908 ORTHO05D004488 4.5e-44 181.4 121 71.9
ECA240G0363 Erigeron canadensis HOM05D003908 ORTHO05D004488 5.8e-44 181.0 116 73.3
Hma1.2p1_0172F.1_g076150 Hydrangea macrophylla HOM05D003908 ORTHO05D004488 5.8e-44 181.0 121 72.7
Prupe.6G005500 Prunus persica HOM05D003908 ORTHO05D004488 5.8e-44 181.0 121 71.1
Sp6g02530 Schrenkiella parvula HOM05D003908 ORTHO05D004488 5.8e-44 181.0 118 73.7
COL.COLO4_15346 Corchorus olitorius HOM05D003908 ORTHO05D004488 7.6e-44 180.6 130 66.9
Duzib138G1305 Durio zibethinus HOM05D003908 ORTHO05D004488 7.6e-44 180.6 121 71.1
FAN09G2689 Fragaria x ananassa HOM05D003908 ORTHO05D004488 7.6e-44 180.6 123 71.5
Glyma.05G135300 Glycine max HOM05D003908 ORTHO05D004488 7.6e-44 180.6 121 71.1
Glyma.08G090500 Glycine max HOM05D003908 ORTHO05D004488 7.6e-44 180.6 121 71.1
Lj4g0023890 Lotus japonicus HOM05D003908 ORTHO05D004488 7.6e-44 180.6 121 71.1
Lalb_Chr12g0209211 Lupinus albus HOM05D003908 ORTHO05D004488 7.6e-44 180.6 121 70.2
Rhsim01G0270200 Rhododendron simsii HOM05D003908 ORTHO05D004488 7.6e-44 180.6 121 71.9
RcHm_v2.0_Chr3g0451151 Rosa chinensis HOM05D003908 ORTHO05D004488 7.6e-44 180.6 123 71.5
Sabra05G0166800 Salix brachista HOM05D003908 ORTHO05D004488 7.6e-44 180.6 122 70.5
SMO367G0680 Selaginella moellendorffii HOM05D003908 ORTHO05D004488 7.6e-44 180.6 128 68.8
Thecc.05G283700 Theobroma cacao HOM05D003908 ORTHO05D004488 7.6e-44 180.6 117 71.8
TPR.G34752 Trifolium pratense HOM05D003908 ORTHO05D004488 7.6e-44 180.6 116 75.0
MELO3C015218.2 Cucumis melo HOM05D003908 ORTHO05D004488 1.0e-43 180.3 123 69.1
CsaV3_1G042520 Cucumis sativus L. HOM05D003908 ORTHO05D004488 1.0e-43 180.3 123 69.1
Lsat_1_v5_gn_6_91060 Lactuca sativa HOM05D003908 ORTHO05D004488 1.0e-43 180.3 116 72.4
MBI07_g21062_MAGBIO Magnolia biondii HOM05D003908 ORTHO05D004488 1.0e-43 180.3 121 71.1
Sed0024016 Sechium edule HOM05D003908 ORTHO05D004488 1.0e-43 180.3 121 71.1
Hund02874 Selenicereus undatus HOM05D003908 ORTHO05D004488 1.0e-43 180.3 123 69.1
VMungo0251G3698 Vigna mungo HOM05D003908 ORTHO05D004488 1.0e-43 180.3 121 71.1
Thhalv10029066m.g Eutrema salsugineum HOM05D003908 ORTHO05D004488 1.3e-43 179.9 118 72.9
Phvul.002G186900 Phaseolus vulgaris HOM05D003908 ORTHO05D004488 1.3e-43 179.9 121 71.1
PGR031G1854 Punica granatum HOM05D003908 ORTHO05D004488 1.3e-43 179.9 121 71.9
BcaC01g06745 Brassica carinata HOM05D003908 ORTHO05D004488 1.7e-43 179.5 125 70.4
C03p37740 Brassica napus HOM05D003908 ORTHO05D004488 1.7e-43 179.5 125 70.4
BolC3t16064H Brassica oleracea HOM05D003908 ORTHO05D004488 1.7e-43 179.5 125 70.4
FAN14G5491 Fragaria x ananassa HOM05D003908 ORTHO05D004488 1.7e-43 179.5 116 73.3
Oeu018177.1 Olea europaea HOM05D003908 ORTHO05D004488 1.7e-43 179.5 122 70.5
Os02g0824700 Oryza sativa ssp. japonica HOM05D003908 ORTHO05D004488 1.7e-43 179.5 121 70.2
Os04g0137500 Oryza sativa ssp. japonica HOM05D003908 ORTHO05D004488 1.7e-43 179.5 121 70.2
BcaB01g02026 Brassica carinata HOM05D003908 ORTHO05D004488 2.2e-43 179.1 125 70.4
BcaB01g02477 Brassica carinata HOM05D003908 ORTHO05D004488 2.2e-43 179.1 125 70.4
BcaC04g24002 Brassica carinata HOM05D003908 ORTHO05D004488 2.2e-43 179.1 125 70.4
A03p30970 Brassica napus HOM05D003908 ORTHO05D004488 2.2e-43 179.1 125 70.4
A09p02050 Brassica napus HOM05D003908 ORTHO05D004488 2.2e-43 179.1 125 70.4
C09p02140 Brassica napus HOM05D003908 ORTHO05D004488 2.2e-43 179.1 125 70.4
BolC9t53144H Brassica oleracea HOM05D003908 ORTHO05D004488 2.2e-43 179.1 125 70.4
Sed0027410 Sechium edule HOM05D003908 ORTHO05D004488 2.2e-43 179.1 121 70.2
Sc17g0001030 Simmondsia chinensis HOM05D003908 ORTHO05D004488 2.2e-43 179.1 121 70.2
ClCG03G017370 Citrullus lanatus HOM05D003908 ORTHO05D004488 2.9e-43 178.7 121 69.4
Gohir.D08G232100 Gossypium hirsutum HOM05D003908 ORTHO05D004488 2.9e-43 178.7 121 70.2
Zm00001eb111070 Zea mays HOM05D003908 ORTHO05D004488 2.9e-43 178.7 121 69.4
AL6G50430 Arabidopsis lyrata HOM05D003908 ORTHO05D004488 3.8e-43 178.3 118 70.3
AT4G02620 Arabidopsis thaliana HOM05D003908 ORTHO05D004488 3.8e-43 178.3 118 70.3
Carub.0006s3452 Capsella rubella HOM05D003908 ORTHO05D004488 3.8e-43 178.3 118 70.3
Aa31LG5G2250 Aethionema arabicum HOM05D003908 ORTHO05D004488 4.9e-43 177.9 123 70.7
CARHR250910 Cardamine hirsuta HOM05D003908 ORTHO05D004488 4.9e-43 177.9 125 68.8
TWI12G1100 Tripterygium wilfordii HOM05D003908 ORTHO05D004488 4.9e-43 177.9 120 70.0
CDE09G0316 Ceratophyllum demersum HOM05D003908 ORTHO05D004488 8.4e-43 177.2 119 70.6
PSO135G0069 Papaver somniferum HOM05D003908 ORTHO05D004488 8.4e-43 177.2 122 72.1
HPP92_001854 Vanilla planifolia HOM05D003908 ORTHO05D004488 8.4e-43 177.2 121 69.4
Zm00001eb330190 Zea mays HOM05D003908 ORTHO05D004488 8.4e-43 177.2 128 67.2
PSO384G1262 Papaver somniferum HOM05D003908 ORTHO05D004488 1.1e-42 176.8 122 71.3
TWI18G0751 Tripterygium wilfordii HOM05D003908 ORTHO05D004488 1.1e-42 176.8 120 69.2
EL10Ac5g10467 Beta vulgaris HOM05D003908 ORTHO05D004488 1.9e-42 176.0 118 69.5
Cc09_g07930 Coffea canephora HOM05D003908 ORTHO05D004488 2.5e-42 175.6 128 65.6
Dinv04731 Davidia involucrata HOM05D003908 ORTHO05D004488 2.5e-42 175.6 113 73.5
HanXRQChr03g0088561 Helianthus annuus HOM05D003908 ORTHO05D004488 5.5e-42 174.5 108 75.0
MD04G1224300 Malus domestica HOM05D003908 ORTHO05D004488 5.5e-42 174.5 113 72.6
MD12G1241000 Malus domestica HOM05D003908 ORTHO05D004488 5.5e-42 174.5 113 73.5
BraA09t35854Z Brassica rapa HOM05D003908 ORTHO05D004488 9.3e-42 173.7 128 68.8
BraA03t12274Z Brassica rapa HOM05D003908 ORTHO05D004488 2.7e-41 172.2 132 66.7
CSS0045088 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 1.0e-40 170.2 121 70.2
Duzib133G0635 Durio zibethinus HOM05D003908 ORTHO05D004488 5.1e-40 167.9 113 70.8
C02p39240 Brassica napus HOM05D003908 ORTHO05D004488 6.7e-40 167.5 138 63.0
arahy.Tifrunner.gnm1.ann1.XQ21SD Arachis hypogaea HOM05D003908 ORTHO05D004488 8.7e-40 167.2 108 73.1
Nitab4.5_0002305g0050 Nicotiana tabacum HOM05D003908 ORTHO05D004488 1.5e-39 166.4 109 71.6
BolC2t09935H Brassica oleracea HOM05D003908 ORTHO05D004488 1.9e-39 166.0 138 62.3
CDE11G1041 Ceratophyllum demersum HOM05D005443 ORTHO05D004488 3.3e-39 165.2 100 79.0
SGA_v2.0_scaffold1G00551 Striga asiatica HOM05D006471 ORTHO05D008157 7.4e-39 164.1 114 66.7
Ciclev10022651m.g Citrus clementina HOM05D003908 ORTHO05D004488 9.7e-39 163.7 147 58.5
PRCOL_00000544 Prasinoderma coloniale HOM05D003908 ORTHO05D004488 1.1e-37 160.2 110 68.2
CSS0044738 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 2.4e-37 159.1 109 73.4
CSS0024256 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 3.1e-37 158.7 104 70.2
CSS0029390 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 3.1e-37 158.7 104 70.2
CSS0046821 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 4.1e-37 158.3 101 71.3
Peaxi162Scf00198g01017 Petunia axillaris HOM05D003908 ORTHO05D004488 9.0e-37 157.1 120 64.2
vmacro14877 Vaccinium macrocarpon HOM05D003908 ORTHO05D004488 2.6e-36 155.6 150 56.0
MCO03G460 Micromonas commoda HOM05D003908 ORTHO05D004488 5.9e-36 154.5 117 61.5
Cre10.g446550 Chlamydomonas reinhardtii HOM05D003908 ORTHO05D004488 2.2e-35 152.5 116 63.8
Haze_21722 Corylus avellana HOM05D003908 ORTHO05D004488 6.5e-35 151.0 121 62.8
CSS0043230 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 1.4e-34 149.8 101 68.3
BcaC03g16154 Brassica carinata HOM05D003908 ORTHO05D004488 1.2e-33 146.7 98 70.4
Actinidia04661 Actinidia chinensis HOM05D003908 ORTHO05D004488 2.3e-32 142.5 113 63.7
Actinidia21151 Actinidia chinensis HOM05D003908 ORTHO05D004488 2.3e-32 142.5 113 63.7
CSS0038153 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 5.7e-31 137.9 101 64.4
Haze_04363 Corylus avellana HOM05D003908 ORTHO05D004488 5.0e-27 124.8 87 67.8
Ah.11g050040 Amaranthus hybridus HOM05D005044 ORTHO05D006799 1.4e-26 123.2 84 66.7
TAR362G1230 Trochodendron aralioides HOM05D003908 ORTHO05D004488 1.4e-26 123.2 101 57.4
Hund09564 Selenicereus undatus HOM05D003908 ORTHO05D004488 2.5e-26 122.5 123 51.2
COL.COLO4_06708 Corchorus olitorius HOM05D003908 ORTHO05D004488 3.2e-26 122.1 84 65.5
COL.COLO4_30210 Corchorus olitorius HOM05D003908 ORTHO05D004488 7.2e-26 120.9 128 52.3
Haze_26154 Corylus avellana HOM05D003908 ORTHO05D004488 3.0e-24 115.5 115 49.6
CiPaw.04G181400 Carya illinoinensis HOM05D003908 ORTHO05D004488 2.0e-23 112.8 80 65.0
SEGI_40634 Sequoiadendron giganteum HOM05D003908 ORTHO05D004488 2.0e-23 112.8 82 64.6
AagrBONN_evm.TU.Sc2ySwM_368.148 Anthoceros agrestis HOM05D003908 ORTHO05D004488 3.3e-23 112.1 77 70.1
Lalb_Chr20g0122801 Lupinus albus HOM05D003908 ORTHO05D004488 6.9e-21 104.4 72 69.4
BcaB05g23651 Brassica carinata HOM05D003908 ORTHO05D004488 2.2e-19 99.4 113 48.7
Nitab4.5_0000138g0160 Nicotiana tabacum HOM05D003908 ORTHO05D004488 2.9e-19 99.0 62 74.2
SHI24544 Sapria himalayana HOM05D003908 ORTHO05D000023 3.3e-15 85.5 70 60.0
Nitab4.5_0008708g0010 Nicotiana tabacum HOM05D003908 ORTHO05D004488 4.4e-15 85.1 60 61.7
Actinidia30711 Actinidia chinensis HOM05D005044 ORTHO05D006799 1.3e-14 83.6 61 65.6
Lalb_Chr20g0122811 Lupinus albus HOM05D003908 ORTHO05D004488 1.1e-13 80.5 68 57.4
DCAR_012514 Daucus carota HOM05D003908 ORTHO05D004488 5.3e-13 78.2 50 66.0
DCAR_018445 Daucus carota HOM05D003908 ORTHO05D004488 7.0e-13 77.8 50 66.0
Sopen12g012850 Solanum pennellii HOM05D003908 ORTHO05D004488 8.5e-11 70.9 58 65.5
AUR62011951 Chenopodium quinoa HOM05D003908 ORTHO05D004488 3.0e-08 62.4 40 72.5
Peaxi162Scf01294g00317 Petunia axillaris HOM05D003908 ORTHO05D004488 1.2e-07 60.5 35 74.3
CSS0012932 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 2.0e-07 59.7 34 70.6


User provided reference genes

Program Settings