Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g38858 Chara braunii HOM05D003659 ORTHO05D004298 9.0e-133 476.9 230 100.0
Hund00440 Selenicereus undatus HOM05D003659 ORTHO05D004298 8.3e-70 267.7 188 67.6
CAN.G407.57 Capsicum annuum HOM05D003659 ORTHO05D004298 1.4e-69 266.9 187 65.8
Migut.I00701 Erythranthe guttata HOM05D003659 ORTHO05D004298 1.4e-69 266.9 181 67.4
CSS0027457 Camellia sinensis var. sinensis HOM05D003659 ORTHO05D004298 3.1e-69 265.8 181 65.7
CSS0033149 Camellia sinensis var. sinensis HOM05D003659 ORTHO05D004298 3.1e-69 265.8 181 65.7
Mapoly0146s0027 Marchantia polymorpha HOM05D003659 ORTHO05D004298 4.1e-69 265.4 221 58.8
Dinv23291 Davidia involucrata HOM05D003659 ORTHO05D004298 5.4e-69 265.0 187 64.2
MSTRG.9405 Avicennia marina HOM05D003659 ORTHO05D004298 9.1e-69 264.2 189 64.0
Oeu060128.1 Olea europaea HOM05D003659 ORTHO05D004298 9.1e-69 264.2 187 65.2
Oeu027829.1 Olea europaea HOM05D003659 ORTHO05D004298 1.2e-68 263.8 187 64.2
Lj5A80T55 Lonicera japonica HOM05D003659 ORTHO05D004298 1.6e-68 263.5 191 63.9
HPP92_004679 Vanilla planifolia HOM05D003659 ORTHO05D004298 2.0e-68 263.1 187 64.2
Hund06525 Selenicereus undatus HOM05D003659 ORTHO05D004298 3.5e-68 262.3 181 65.7
EL10Ac9g22216 Beta vulgaris HOM05D003659 ORTHO05D004298 4.5e-68 261.9 192 63.0
Cfa013072 Carpinus fangiana HOM05D003659 ORTHO05D004298 4.5e-68 261.9 191 62.3
AUR62026991 Chenopodium quinoa HOM05D003659 ORTHO05D004298 4.5e-68 261.9 182 67.6
Migut.D01114 Erythranthe guttata HOM05D003659 ORTHO05D004298 4.5e-68 261.9 181 65.7
Nn2g12325 Nelumbo nucifera HOM05D003659 ORTHO05D004298 4.5e-68 261.9 185 64.9
PGR044G1948 Punica granatum HOM05D003659 ORTHO05D004298 4.5e-68 261.9 181 66.3
PGSC0003DMG400014120 Solanum tuberosum HOM05D003659 ORTHO05D004298 4.5e-68 261.9 187 64.2
Zm00001eb179820 Zea mays HOM05D003659 ORTHO05D004298 4.5e-68 261.9 217 59.0
DCAR_021366 Daucus carota HOM05D003659 ORTHO05D004298 5.9e-68 261.5 186 65.1
Os08g0440500 Oryza sativa ssp. japonica HOM05D003659 ORTHO05D004298 5.9e-68 261.5 217 60.4
THA.LOC104803632 Tarenaya hassleriana HOM05D003659 ORTHO05D004298 5.9e-68 261.5 193 61.7
PSO017G1057 Papaver somniferum HOM05D003659 ORTHO05D004298 1.0e-67 260.8 181 65.7
Peaxi162Scf00332g00435 Petunia axillaris HOM05D003659 ORTHO05D004298 1.0e-67 260.8 189 64.6
TAR625G1087 Trochodendron aralioides HOM05D003659 ORTHO05D004298 1.0e-67 260.8 181 64.1
TAR625G1310 Trochodendron aralioides HOM05D003659 ORTHO05D004298 1.0e-67 260.8 181 64.1
ClCG05G016430 Citrullus lanatus HOM05D003659 ORTHO05D004298 1.3e-67 260.4 187 63.6
Aqoxy7G01595 Aquilegia oxysepala HOM05D003659 ORTHO05D004298 1.7e-67 260.0 190 62.1
QL02p019557 Quercus lobata HOM05D003659 ORTHO05D004298 1.7e-67 260.0 191 62.3
Solyc03g117020.4 Solanum lycopersicum HOM05D003659 ORTHO05D004298 1.7e-67 260.0 191 62.3
Sopen03g035920 Solanum pennellii HOM05D003659 ORTHO05D004298 1.7e-67 260.0 191 62.3
Cc04_g05030 Coffea canephora HOM05D003659 ORTHO05D004298 2.3e-67 259.6 181 65.7
Glyma.06G062900 Glycine max HOM05D003659 ORTHO05D004298 2.3e-67 259.6 190 64.2
Lsat_1_v5_gn_1_32141 Lactuca sativa HOM05D003659 ORTHO05D004298 2.3e-67 259.6 191 60.7
BcaB06g28036 Brassica carinata HOM05D003659 ORTHO05D004298 2.9e-67 259.2 192 61.5
Thhalv10000317m.g Eutrema salsugineum HOM05D003659 ORTHO05D004298 2.9e-67 259.2 192 62.0
Lj1g0004529 Lotus japonicus HOM05D003659 ORTHO05D004298 2.9e-67 259.2 177 67.2
PSO170G6877 Papaver somniferum HOM05D003659 ORTHO05D004298 2.9e-67 259.2 181 65.2
Rhsim12G0187700 Rhododendron simsii HOM05D003659 ORTHO05D004298 2.9e-67 259.2 191 62.8
Sp4g04120 Schrenkiella parvula HOM05D003659 ORTHO05D004298 2.9e-67 259.2 191 62.3
A04p19520 Brassica napus HOM05D003659 ORTHO05D004298 3.8e-67 258.8 191 62.3
BraA04t17546Z Brassica rapa HOM05D003659 ORTHO05D004298 3.8e-67 258.8 191 62.3
CARHR116580 Cardamine hirsuta HOM05D003659 ORTHO05D004298 3.8e-67 258.8 191 61.8
CDE05G0949 Ceratophyllum demersum HOM05D003659 ORTHO05D004298 3.8e-67 258.8 180 63.9
MELO3C016972.2 Cucumis melo HOM05D003659 ORTHO05D004298 3.8e-67 258.8 181 64.6
DCAR_025575 Daucus carota HOM05D003659 ORTHO05D004298 3.8e-67 258.8 186 64.0
Zm00001eb041170 Zea mays HOM05D003659 ORTHO05D004298 3.8e-67 258.8 217 58.5
Actinidia25461 Actinidia chinensis HOM05D003659 ORTHO05D004298 5.0e-67 258.5 181 64.1
MSTRG.22794 Avicennia marina HOM05D003659 ORTHO05D004298 5.0e-67 258.5 187 63.1
Os08g0278900 Oryza sativa ssp. japonica HOM05D003659 ORTHO05D004298 5.0e-67 258.5 193 61.7
Prupe.1G392400 Prunus persica HOM05D003659 ORTHO05D004298 5.0e-67 258.5 190 63.2
Sed0005308 Sechium edule HOM05D003659 ORTHO05D004298 5.0e-67 258.5 177 65.5
C04p55110 Brassica napus HOM05D003659 ORTHO05D004298 8.6e-67 257.7 191 62.3
BolC4t27050H Brassica oleracea HOM05D003659 ORTHO05D004298 8.6e-67 257.7 191 62.3
HanXRQChr04g0098481 Helianthus annuus HOM05D003659 ORTHO05D004298 8.6e-67 257.7 191 61.3
GSVIVG01034217001 Vitis vinifera HOM05D003659 ORTHO05D004298 8.6e-67 257.7 181 64.6
Actinidia18243 Actinidia chinensis HOM05D003659 ORTHO05D004298 1.1e-66 257.3 181 64.1
Carub.0004s0471 Capsella rubella HOM05D003659 ORTHO05D004298 1.1e-66 257.3 191 61.8
Ciclev10009450m.g Citrus clementina HOM05D003659 ORTHO05D004298 1.1e-66 257.3 181 64.6
Nn8g39829 Nelumbo nucifera HOM05D003659 ORTHO05D004298 1.1e-66 257.3 188 63.8
Phvul.009G088100 Phaseolus vulgaris HOM05D003659 ORTHO05D004298 1.1e-66 257.3 176 65.9
Actinidia08946 Actinidia chinensis HOM05D003659 ORTHO05D004298 1.5e-66 256.9 181 64.6
Glyma.04G061900 Glycine max HOM05D003659 ORTHO05D004298 1.5e-66 256.9 177 65.5
Aa31LG7G12130 Aethionema arabicum HOM05D003659 ORTHO05D004298 1.9e-66 256.5 191 62.3
AT2G25110 Arabidopsis thaliana HOM05D003659 ORTHO05D004298 1.9e-66 256.5 191 61.3
arahy.Tifrunner.gnm1.ann1.48QDBJ Arachis hypogaea HOM05D003659 ORTHO05D004298 1.9e-66 256.5 176 65.9
arahy.Tifrunner.gnm1.ann1.85LDPV Arachis hypogaea HOM05D003659 ORTHO05D004298 1.9e-66 256.5 176 65.9
BcaC02g08370 Brassica carinata HOM05D003659 ORTHO05D004298 1.9e-66 256.5 191 61.8
TWI34G1103 Tripterygium wilfordii HOM05D003659 ORTHO05D004298 1.9e-66 256.5 186 61.8
ECA246G1998 Erigeron canadensis HOM05D003659 ORTHO05D004298 2.5e-66 256.1 187 61.5
Eucgr.C02663 Eucalyptus grandis HOM05D003659 ORTHO05D004298 2.5e-66 256.1 181 62.4
FvH4_2g40990 Fragaria vesca HOM05D003659 ORTHO05D004298 2.5e-66 256.1 190 63.7
AL4G16270 Arabidopsis lyrata HOM05D003659 ORTHO05D004298 3.3e-66 255.8 191 61.3
CsaV3_4G036690 Cucumis sativus L. HOM05D003659 ORTHO05D004298 3.3e-66 255.8 187 61.5
ECA247G2368 Erigeron canadensis HOM05D003659 ORTHO05D004298 3.3e-66 255.8 185 63.2
Gohir.A05G058400 Gossypium hirsutum HOM05D003659 ORTHO05D004298 3.3e-66 255.8 180 63.9
Gorai.001G037100 Gossypium raimondii HOM05D003659 ORTHO05D004298 3.3e-66 255.8 180 63.9
MSTRG.11175 Avicennia marina HOM05D003659 ORTHO05D004298 4.2e-66 255.4 189 62.4
AUR62030831 Chenopodium quinoa HOM05D003659 ORTHO05D004298 4.2e-66 255.4 193 62.2
RcHm_v2.0_Chr6g0299581 Rosa chinensis HOM05D003659 ORTHO05D004298 4.2e-66 255.4 190 62.1
BolC8t51458H Brassica oleracea HOM05D003659 ORTHO05D004298 5.5e-66 255.0 192 60.9
Pp3c4_7140 Physcomitrium patens HOM05D003659 ORTHO05D004298 5.5e-66 255.0 183 66.7
Duzib150G0849 Durio zibethinus HOM05D003659 ORTHO05D004298 7.2e-66 254.6 177 64.4
Lalb_Chr23g0268261 Lupinus albus HOM05D003659 ORTHO05D004298 7.2e-66 254.6 187 61.5
Manes.16G128300 Manihot esculenta HOM05D003659 ORTHO05D004298 7.2e-66 254.6 191 60.7
SGA_v2.0_scaffold5G02776 Striga asiatica HOM05D003659 ORTHO05D004298 7.2e-66 254.6 181 65.2
TWI32G0040 Tripterygium wilfordii HOM05D003659 ORTHO05D004298 7.2e-66 254.6 186 61.8
Duzib168G1659 Durio zibethinus HOM05D003659 ORTHO05D004298 9.5e-66 254.2 180 62.8
Gohir.A07G031500 Gossypium hirsutum HOM05D003659 ORTHO05D004298 9.5e-66 254.2 180 63.3
Gohir.D05G060500 Gossypium hirsutum HOM05D003659 ORTHO05D004298 9.5e-66 254.2 177 64.4
Gorai.009G061600 Gossypium raimondii HOM05D003659 ORTHO05D004298 9.5e-66 254.2 180 63.3
Lj9A494G39 Lonicera japonica HOM05D003659 ORTHO05D004298 9.5e-66 254.2 181 63.5
Sed0006058 Sechium edule HOM05D003659 ORTHO05D004298 9.5e-66 254.2 185 62.7
SEGI_01700 Sequoiadendron giganteum HOM05D003659 ORTHO05D004298 9.5e-66 254.2 174 67.8
vmacro19047 Vaccinium macrocarpon HOM05D003659 ORTHO05D004298 9.5e-66 254.2 189 63.5
Atru.chr7.2534 Acer truncatum HOM05D003659 ORTHO05D004298 1.2e-65 253.8 187 59.9
CiPaw.08G006800 Carya illinoinensis HOM05D003659 ORTHO05D004298 1.2e-65 253.8 197 59.4
Lsat_1_v5_gn_5_8201 Lactuca sativa HOM05D003659 ORTHO05D004298 1.2e-65 253.8 181 63.5
MD08G1057800 Malus domestica HOM05D003659 ORTHO05D004298 1.6e-65 253.4 179 63.7
Psat5g032160 Pisum sativum HOM05D003659 ORTHO05D004298 1.6e-65 253.4 177 63.3
vmacro16858 Vaccinium macrocarpon HOM05D003659 ORTHO05D004298 1.6e-65 253.4 191 61.8
Cpa.g.sc127.19 Carica papaya HOM05D003659 ORTHO05D004298 2.1e-65 253.1 177 64.4
FAN27G2887 Fragaria x ananassa HOM05D003659 ORTHO05D004298 2.1e-65 253.1 187 63.6
MD15G1038400 Malus domestica HOM05D003659 ORTHO05D004298 2.1e-65 253.1 190 61.6
Lalb_Chr08g0244391 Lupinus albus HOM05D003659 ORTHO05D004298 2.8e-65 252.7 177 63.8
Gohir.D07G035300 Gossypium hirsutum HOM05D003659 ORTHO05D004298 3.6e-65 252.3 180 62.8
Nitab4.5_0001454g0190 Nicotiana tabacum HOM05D003659 ORTHO05D004298 4.7e-65 251.9 198 61.6
Thecc.09G017100 Theobroma cacao HOM05D003659 ORTHO05D004298 4.7e-65 251.9 181 62.4
GSVIVG01035892001 Vitis vinifera HOM05D003659 ORTHO05D004298 4.7e-65 251.9 197 58.9
ATR0739G101 Amborella trichopoda HOM05D003659 ORTHO05D004298 6.1e-65 251.5 185 61.6
CSS0004565 Camellia sinensis var. sinensis HOM05D003659 ORTHO05D004298 6.1e-65 251.5 181 63.0
CSS0014874 Camellia sinensis var. sinensis HOM05D003659 ORTHO05D004298 6.1e-65 251.5 181 63.0
FAN20G3050 Fragaria x ananassa HOM05D003659 ORTHO05D004298 6.1e-65 251.5 187 63.1
HanXRQChr08g0235851 Helianthus annuus HOM05D003659 ORTHO05D004298 6.1e-65 251.5 191 59.2
Potri.018G020700 Populus trichocarpa HOM05D003659 ORTHO05D004298 6.1e-65 251.5 177 63.8
CDE02G2060 Ceratophyllum demersum HOM05D003659 ORTHO05D004298 1.4e-64 250.4 169 65.1
Potri.006G263200 Populus trichocarpa HOM05D003659 ORTHO05D004298 1.4e-64 250.4 195 59.5
HanXRQChr05g0153781 Helianthus annuus HOM05D003659 ORTHO05D004298 1.8e-64 250.0 187 62.6
Pp3c12_21450 Physcomitrium patens HOM05D003659 ORTHO05D004298 3.0e-64 249.2 182 64.8
Rhsim08G0207200 Rhododendron simsii HOM05D003659 ORTHO05D004298 3.0e-64 249.2 181 63.5
A09p55870 Brassica napus HOM05D003659 ORTHO05D004298 4.0e-64 248.8 180 62.8
BraA09t40990Z Brassica rapa HOM05D003659 ORTHO05D004298 4.0e-64 248.8 180 62.8
Sabra06G0205400 Salix brachista HOM05D003659 ORTHO05D004298 4.0e-64 248.8 195 59.5
SMO340G0294 Selaginella moellendorffii HOM05D003659 ORTHO05D004298 4.0e-64 248.8 177 65.5
BcaC07g40890 Brassica carinata HOM05D003659 ORTHO05D004298 5.2e-64 248.4 180 62.8
C08p38860 Brassica napus HOM05D003659 ORTHO05D004298 5.2e-64 248.4 180 62.8
SHI18485 Sapria himalayana HOM05D003659 ORTHO05D004298 5.2e-64 248.4 188 61.7
Manes.03G010100 Manihot esculenta HOM05D003659 ORTHO05D004298 8.9e-64 247.7 187 60.4
unitig_61.g26227 Utricularia gibba HOM05D003659 ORTHO05D004298 1.2e-63 247.3 181 61.3
Ah.01g006880 Amaranthus hybridus HOM05D003659 ORTHO05D004298 1.5e-63 246.9 230 54.3
SalBow7G4756 Salvia bowleyana HOM05D003659 ORTHO05D004298 3.4e-63 245.7 166 66.3
Oeu004335.5 Olea europaea HOM05D003659 ORTHO05D004298 4.4e-63 245.4 212 56.1
SMO304G0007 Selaginella moellendorffii HOM05D003659 ORTHO05D004298 1.7e-62 243.4 190 60.0
Medtr3g106130 Medicago truncatula HOM05D003659 ORTHO05D004298 3.7e-62 242.3 197 58.4
unitig_0.g1106 Utricularia gibba HOM05D003659 ORTHO05D004298 4.9e-62 241.9 223 52.0
COL.COLO4_03628 Corchorus olitorius HOM05D003659 ORTHO05D004298 1.1e-61 240.7 166 65.1
Haze_21430 Corylus avellana HOM05D003659 ORTHO05D004298 2.7e-60 236.1 236 50.0
Ah.16g104980 Amaranthus hybridus HOM05D003659 ORTHO05D004298 3.9e-59 232.3 189 57.7
arahy.Tifrunner.gnm1.ann1.Q7FMUW Arachis hypogaea HOM05D003659 ORTHO05D004298 5.0e-59 231.9 192 55.7
arahy.Tifrunner.gnm1.ann1.7GH63I Arachis hypogaea HOM05D003659 ORTHO05D004298 2.5e-58 229.6 192 55.7
Sc12g0008380 Simmondsia chinensis HOM05D003659 ORTHO05D004298 2.8e-57 226.1 168 62.5
Cre13.g571750 Chlamydomonas reinhardtii HOM05D003659 ORTHO05D004298 3.4e-55 219.2 183 57.9
Lsat_1_v5_gn_4_87041 Lactuca sativa HOM05D003659 ORTHO05D004298 7.5e-55 218.0 187 56.7
Pp3c9_3320 Physcomitrium patens HOM05D003659 ORTHO05D004298 9.8e-55 217.6 197 54.8
MCO11G512 Micromonas commoda HOM05D003659 ORTHO05D004298 6.0e-52 208.4 179 55.9
HPP92_010392 Vanilla planifolia HOM05D003659 ORTHO05D004298 2.3e-48 196.4 154 55.2
TPR.G3109 Trifolium pratense HOM05D003659 ORTHO05D004298 2.2e-46 189.9 182 53.3
TAR636G3496 Trochodendron aralioides HOM05D003659 ORTHO05D004298 4.3e-42 175.6 207 47.8
Dinv21405 Davidia involucrata HOM05D003659 ORTHO05D004298 1.6e-41 173.7 118 62.7
AUR62012468 Chenopodium quinoa HOM05D003659 ORTHO05D004298 1.4e-40 170.6 184 49.5
PRCOL_00006403 Prasinoderma coloniale HOM05D003659 ORTHO05D004298 1.9e-37 160.2 183 43.2
AUR62031594 Chenopodium quinoa HOM05D003659 ORTHO05D004298 4.1e-37 159.1 176 46.6
THA.LOC104804845 Tarenaya hassleriana HOM05D003659 ORTHO05D004298 4.3e-34 149.1 103 62.1
Nitab4.5_0026787g0010 Nicotiana tabacum HOM05D003659 ORTHO05D004298 1.2e-31 141.0 108 61.1
Cc10_g10650 Coffea canephora HOM05D003659 ORTHO05D004298 1.0e-27 127.9 92 66.3
Cc07_g20440 Coffea canephora HOM05D003659 ORTHO05D004298 1.3e-27 127.5 95 64.2
Cc08_g06110 Coffea canephora HOM05D003659 ORTHO05D004298 1.7e-27 127.1 94 64.9
arahy.Tifrunner.gnm1.ann1.K0Y0BK Arachis hypogaea HOM05D003659 ORTHO05D004298 3.0e-27 126.3 104 52.9
Cc10_g09910 Coffea canephora HOM05D003659 ORTHO05D004298 3.0e-27 126.3 89 66.3
Cc05_g03490 Coffea canephora HOM05D003659 ORTHO05D004298 5.1e-27 125.6 89 66.3
Cc00_g05940 Coffea canephora HOM05D003659 ORTHO05D004298 8.7e-27 124.8 90 64.4
TPR.G40670 Trifolium pratense HOM05D003659 ORTHO05D004298 7.3e-26 121.7 87 59.8
Dinv40986 Davidia involucrata HOM05D003659 ORTHO05D004298 3.6e-25 119.4 118 50.8
Cc08_g07620 Coffea canephora HOM05D003659 ORTHO05D004298 3.1e-24 116.3 80 68.8
Cc05_g01640 Coffea canephora HOM05D003659 ORTHO05D004298 4.4e-23 112.5 95 58.9
EL10Ac2g04128 Beta vulgaris HOM05D003659 ORTHO05D004298 4.9e-22 109.0 143 42.0
Cc00_g21920 Coffea canephora HOM05D003659 ORTHO05D004298 1.1e-21 107.8 79 67.1
Cc00_g06440 Coffea canephora HOM05D003659 ORTHO05D004298 3.2e-21 106.3 78 62.8
Actinidia36884 Actinidia chinensis HOM05D003659 ORTHO05D004298 4.6e-20 102.4 78 62.8
Ca_15770_v3 Cicer arietinum L. HOM05D003659 ORTHO05D004298 4.8e-17 92.4 61 68.9
Haze_27667 Corylus avellana HOM05D003659 ORTHO05D004298 1.1e-16 91.3 118 39.8
BraA10t44716Z Brassica rapa HOM05D001880 ORTHO05D004730 5.3e-16 89.0 62 58.1
AagrBONN_evm.TU.Sc2ySwM_117.1898 Anthoceros agrestis HOM05D003659 ORTHO05D004298 4.9e-14 82.4 49 77.6
HPP92_010427 Vanilla planifolia HOM05D003659 ORTHO05D004298 8.4e-14 81.6 89 47.2
FvH4_3g15950 Fragaria vesca HOM05D003659 ORTHO05D004298 4.2e-13 79.3 61 63.9
Cfa024316 Carpinus fangiana HOM05D003659 ORTHO05D124421 4.3e-10 69.3 218 29.4
Cfa026278 Carpinus fangiana HOM05D003659 ORTHO05D121859 9.6e-10 68.2 191 31.9
FAN11G3099 Fragaria x ananassa HOM05D003659 ORTHO05D004298 4.8e-09 65.9 51 62.7
Hma1.2p1_0302F.1_g118750 Hydrangea macrophylla HOM05D003659 ORTHO05D004298 2.2e-06 57.0 61 44.3


User provided reference genes

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