Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g38780 Chara braunii HOM05D004562 ORTHO05D005435 0.0e+00 3181.3 1862 100.0
Mapoly0118s0042 Marchantia polymorpha HOM05D004562 ORTHO05D005435 2.1e-70 272.7 622 32.6
Pp3c10_10590 Physcomitrium patens HOM05D004562 ORTHO05D005435 2.3e-69 269.2 555 33.5
AagrBONN_evm.TU.Sc2ySwM_228.5527 Anthoceros agrestis HOM05D004562 ORTHO05D005435 3.7e-67 261.9 221 62.0
Sc12g0007950 Simmondsia chinensis HOM05D004562 ORTHO05D005435 7.7e-65 254.2 572 31.6
MBI13_g01852_MAGBIO Magnolia biondii HOM05D004562 ORTHO05D005435 1.0e-64 253.8 553 32.2
CAN.G843.49 Capsicum annuum HOM05D004562 ORTHO05D005435 1.3e-64 253.4 226 56.6
Lalb_Chr09g0330331 Lupinus albus HOM05D004562 ORTHO05D005435 3.8e-64 251.9 229 57.6
Nitab4.5_0010397g0020 Nicotiana tabacum HOM05D004562 ORTHO05D005435 3.8e-64 251.9 221 57.5
Peaxi162Scf00314g00332 Petunia axillaris HOM05D004562 ORTHO05D005435 3.8e-64 251.9 221 57.0
Nitab4.5_0001264g0030 Nicotiana tabacum HOM05D004562 ORTHO05D005435 5.0e-64 251.5 221 57.9
Oeu026264.3 Olea europaea HOM05D004562 ORTHO05D005435 8.5e-64 250.8 578 31.7
SEGI_15130 Sequoiadendron giganteum HOM05D004562 ORTHO05D005435 1.4e-63 250.0 553 32.0
PGSC0003DMG400005676 Solanum tuberosum HOM05D004562 ORTHO05D005435 3.2e-63 248.8 221 57.5
CiPaw.16G096100 Carya illinoinensis HOM05D004562 ORTHO05D005435 5.5e-63 248.1 221 57.0
Dinv02642 Davidia involucrata HOM05D004562 ORTHO05D005435 5.5e-63 248.1 614 30.5
Sopen03g037570 Solanum pennellii HOM05D004562 ORTHO05D005435 5.5e-63 248.1 221 57.0
FvH4_5g17490 Fragaria vesca HOM05D004562 ORTHO05D005435 7.2e-63 247.7 578 31.0
FAN18G3714 Fragaria x ananassa HOM05D004562 ORTHO05D005435 7.2e-63 247.7 578 31.0
Lalb_Chr05g0221581 Lupinus albus HOM05D004562 ORTHO05D005435 7.2e-63 247.7 229 55.9
RcHm_v2.0_Chr7g0178201 Rosa chinensis HOM05D004562 ORTHO05D005435 9.4e-63 247.3 578 31.1
Solyc03g118620.3 Solanum lycopersicum HOM05D004562 ORTHO05D005435 9.4e-63 247.3 221 57.0
vmacro16407 Vaccinium macrocarpon HOM05D004562 ORTHO05D005435 9.4e-63 247.3 578 31.1
Aqoxy3G00029 Aquilegia oxysepala HOM05D004562 ORTHO05D005435 1.2e-62 246.9 221 58.4
Cc04_g06100 Coffea canephora HOM05D004562 ORTHO05D005435 1.6e-62 246.5 221 57.9
CSS0019251 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 2.1e-62 246.1 226 55.8
Ciclev10007290m.g Citrus clementina HOM05D004562 ORTHO05D005435 2.1e-62 246.1 557 30.9
MELO3C017375.2 Cucumis melo HOM05D004562 ORTHO05D005435 2.1e-62 246.1 221 56.6
FAN08G1802 Fragaria x ananassa HOM05D004562 ORTHO05D005435 2.7e-62 245.7 221 57.5
FAN13G2245 Fragaria x ananassa HOM05D004562 ORTHO05D005435 3.6e-62 245.4 578 30.8
Psat7g001240 Pisum sativum HOM05D004562 ORTHO05D005435 3.6e-62 245.4 221 56.1
CDE05G0309 Ceratophyllum demersum HOM05D004562 ORTHO05D005435 4.6e-62 245.0 221 55.7
Ca_17180_v3 Cicer arietinum L. HOM05D004562 ORTHO05D005435 4.6e-62 245.0 221 56.6
ClCG06G014190 Citrullus lanatus HOM05D004562 ORTHO05D005435 4.6e-62 245.0 221 56.1
CsaV3_1G004480 Cucumis sativus L. HOM05D004562 ORTHO05D005435 4.6e-62 245.0 221 56.6
Eucgr.K02277 Eucalyptus grandis HOM05D004562 ORTHO05D005435 4.6e-62 245.0 221 57.5
Glyma.08G055400 Glycine max HOM05D004562 ORTHO05D005435 4.6e-62 245.0 221 56.1
Lsat_1_v5_gn_2_14940 Lactuca sativa HOM05D004562 ORTHO05D005435 4.6e-62 245.0 578 31.1
Cfa019638 Carpinus fangiana HOM05D004562 ORTHO05D005435 6.1e-62 244.6 574 30.8
Gohir.A12G270000 Gossypium hirsutum HOM05D004562 ORTHO05D005435 6.1e-62 244.6 226 55.8
ATR0753G019 Amborella trichopoda HOM05D004562 ORTHO05D005435 1.0e-61 243.8 221 57.5
CANSAT80G2549 Cannabis sativa HOM05D004562 ORTHO05D005435 1.0e-61 243.8 221 56.1
Sed0003970 Sechium edule HOM05D004562 ORTHO05D005435 1.0e-61 243.8 221 56.1
FAN04G0449 Fragaria x ananassa HOM05D004562 ORTHO05D005435 1.4e-61 243.4 221 56.6
Gorai.008G290800 Gossypium raimondii HOM05D004562 ORTHO05D005435 1.4e-61 243.4 226 55.3
MD06G1228300 Malus domestica HOM05D004562 ORTHO05D005435 1.4e-61 243.4 226 54.9
Prupe.5G234800 Prunus persica HOM05D004562 ORTHO05D005435 1.4e-61 243.4 221 56.1
Rhsim12G0137700 Rhododendron simsii HOM05D004562 ORTHO05D005435 1.4e-61 243.4 221 57.0
CiPaw.15G144500 Carya illinoinensis HOM05D004562 ORTHO05D005435 1.8e-61 243.0 221 56.6
COL.COLO4_28896 Corchorus olitorius HOM05D004562 ORTHO05D005435 1.8e-61 243.0 226 55.3
MD14G1237500 Malus domestica HOM05D004562 ORTHO05D005435 1.8e-61 243.0 226 55.3
Cpa.g.sc3.379 Carica papaya HOM05D004562 ORTHO05D005435 2.3e-61 242.7 221 55.7
arahy.Tifrunner.gnm1.ann1.G227WQ Arachis hypogaea HOM05D004562 ORTHO05D005435 3.0e-61 242.3 221 54.8
PSO478G3379 Papaver somniferum HOM05D004562 ORTHO05D005435 3.0e-61 242.3 221 56.6
Sed0022497 Sechium edule HOM05D004562 ORTHO05D005435 3.0e-61 242.3 221 55.2
arahy.Tifrunner.gnm1.ann1.WQ60SD Arachis hypogaea HOM05D004562 ORTHO05D005435 3.9e-61 241.9 221 54.8
Glyma.05G247000 Glycine max HOM05D004562 ORTHO05D005435 3.9e-61 241.9 221 55.2
Nn4g24285 Nelumbo nucifera HOM05D004562 ORTHO05D005435 3.9e-61 241.9 221 57.0
Haze_18884 Corylus avellana HOM05D004562 ORTHO05D005435 5.1e-61 241.5 221 55.7
Gohir.D12G270500 Gossypium hirsutum HOM05D004562 ORTHO05D005435 5.1e-61 241.5 226 54.9
Nn3g18314 Nelumbo nucifera HOM05D004562 ORTHO05D005435 5.1e-61 241.5 221 56.1
Phvul.002G331100 Phaseolus vulgaris HOM05D004562 ORTHO05D005435 6.7e-61 241.1 221 55.7
Potri.012G045300 Populus trichocarpa HOM05D004562 ORTHO05D005435 6.7e-61 241.1 221 56.1
MSTRG.9309 Avicennia marina HOM05D004562 ORTHO05D005435 8.8e-61 240.7 221 56.6
HanXRQChr09g0268071 Helianthus annuus HOM05D004562 ORTHO05D005435 8.8e-61 240.7 226 54.9
CSS0009282 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 1.1e-60 240.4 221 56.6
CSS0039239 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 1.1e-60 240.4 221 56.6
Migut.D01318 Erythranthe guttata HOM05D004562 ORTHO05D005435 1.1e-60 240.4 221 55.2
Medtr8g107440 Medicago truncatula HOM05D004562 ORTHO05D005435 1.1e-60 240.4 229 54.1
AUR62029906 Chenopodium quinoa HOM05D004562 ORTHO05D005435 1.5e-60 240.0 562 31.1
QL10p030682 Quercus lobata HOM05D004562 ORTHO05D005435 1.5e-60 240.0 221 56.1
Manes.06G004700 Manihot esculenta HOM05D004562 ORTHO05D005435 2.0e-60 239.6 221 56.1
Sabra15G0029800 Salix brachista HOM05D004562 ORTHO05D005435 2.0e-60 239.6 220 54.5
DCAR_011617 Daucus carota HOM05D004562 ORTHO05D005435 2.5e-60 239.2 221 55.7
Lj4g0011431 Lotus japonicus HOM05D004562 ORTHO05D005435 2.5e-60 239.2 221 55.7
PSO017G6436 Papaver somniferum HOM05D004562 ORTHO05D005435 3.3e-60 238.8 221 55.7
Hund22308 Selenicereus undatus HOM05D004562 ORTHO05D005435 3.3e-60 238.8 226 56.2
HPP92_016742 Vanilla planifolia HOM05D004562 ORTHO05D005435 4.3e-60 238.4 557 31.1
Aa31LG10G5260 Aethionema arabicum HOM05D004562 ORTHO05D005435 5.7e-60 238.0 226 54.0
CARHR093250 Cardamine hirsuta HOM05D004562 ORTHO05D005435 7.4e-60 237.7 226 53.1
Thhalv10019973m.g Eutrema salsugineum HOM05D004562 ORTHO05D005435 7.4e-60 237.7 226 54.0
Sp3g16040 Schrenkiella parvula HOM05D004562 ORTHO05D005435 7.4e-60 237.7 226 53.5
AT3G17920 Arabidopsis thaliana HOM05D004562 ORTHO05D005435 1.3e-59 236.9 226 54.0
BcaB06g25854 Brassica carinata HOM05D004562 ORTHO05D005435 1.3e-59 236.9 226 53.5
BcaC05g28736 Brassica carinata HOM05D004562 ORTHO05D005435 1.7e-59 236.5 226 53.1
A05p31880 Brassica napus HOM05D004562 ORTHO05D005435 1.7e-59 236.5 226 53.1
BolC5t33574H Brassica oleracea HOM05D004562 ORTHO05D005435 1.7e-59 236.5 226 53.1
BraA05t22020Z Brassica rapa HOM05D004562 ORTHO05D005435 1.7e-59 236.5 226 53.1
C05p48370 Brassica napus HOM05D004562 ORTHO05D005435 2.2e-59 236.1 226 52.7
PGR044G1246 Punica granatum HOM05D004562 ORTHO05D005435 2.2e-59 236.1 221 55.2
VMungo0251G1597 Vigna mungo HOM05D004562 ORTHO05D005435 2.2e-59 236.1 221 53.8
Potri.015G036300 Populus trichocarpa HOM05D004562 ORTHO05D005435 2.8e-59 235.7 221 55.7
SalBow1G2489 Salvia bowleyana HOM05D004562 ORTHO05D005435 2.8e-59 235.7 221 55.7
unitig_46.g18720 Utricularia gibba HOM05D004562 ORTHO05D005435 2.8e-59 235.7 221 53.8
ECA238G1924 Erigeron canadensis HOM05D004562 ORTHO05D005435 3.7e-59 235.3 230 51.7
TWI60G0891 Tripterygium wilfordii HOM05D004562 ORTHO05D005435 3.7e-59 235.3 224 54.9
Carub.0003s1765 Capsella rubella HOM05D004562 ORTHO05D005435 6.3e-59 234.6 226 52.7
Gorai.005G132200 Gossypium raimondii HOM05D004562 ORTHO05D005435 6.3e-59 234.6 226 54.0
HanXRQChr02g0032401 Helianthus annuus HOM05D004562 ORTHO05D005435 8.2e-59 234.2 226 53.1
TAR374G0462 Trochodendron aralioides HOM05D004562 ORTHO05D005435 1.1e-58 233.8 221 56.6
Actinidia35140 Actinidia chinensis HOM05D004562 ORTHO05D005435 1.4e-58 233.4 221 54.8
A06p04420 Brassica napus HOM05D004562 ORTHO05D005435 1.8e-58 233.0 221 52.9
CARHR038150 Cardamine hirsuta HOM05D004562 ORTHO05D005435 1.8e-58 233.0 221 52.5
Gohir.D02G121900 Gossypium hirsutum HOM05D004562 ORTHO05D005435 1.8e-58 233.0 226 54.0
BcaB07g33749 Brassica carinata HOM05D004562 ORTHO05D005435 2.4e-58 232.6 221 52.9
Ah.14g085940 Amaranthus hybridus HOM05D004562 ORTHO05D005435 3.1e-58 232.3 226 53.1
EL10Ac8g19501 Beta vulgaris HOM05D004562 ORTHO05D005435 3.1e-58 232.3 226 54.0
Thhalv10011201m.g Eutrema salsugineum HOM05D004562 ORTHO05D005435 4.1e-58 231.9 221 52.9
BcaC08g43044 Brassica carinata HOM05D004562 ORTHO05D005435 5.3e-58 231.5 221 52.5
C06p03060 Brassica napus HOM05D004562 ORTHO05D005435 5.3e-58 231.5 221 52.5
SGA_v2.0_scaffold172G39021 Striga asiatica HOM05D004562 ORTHO05D005435 6.9e-58 231.1 237 51.9
THA.LOC104820345 Tarenaya hassleriana HOM05D004562 ORTHO05D005435 9.1e-58 230.7 221 52.9
AUR62033795 Chenopodium quinoa HOM05D004562 ORTHO05D005435 1.2e-57 230.3 226 53.1
Sp1g35480 Schrenkiella parvula HOM05D004562 ORTHO05D005435 1.2e-57 230.3 221 52.5
Zm00001eb008950 Zea mays HOM05D004562 ORTHO05D005435 1.2e-57 230.3 217 54.4
Aa31LG8G4790 Aethionema arabicum HOM05D004562 ORTHO05D005435 2.0e-57 229.6 221 52.0
Os03g0221800 Oryza sativa ssp. japonica HOM05D004562 ORTHO05D005435 2.6e-57 229.2 218 55.0
AL1G55180 Arabidopsis lyrata HOM05D004562 ORTHO05D005435 3.4e-57 228.8 221 52.5
AT1G48540 Arabidopsis thaliana HOM05D004562 ORTHO05D005435 4.5e-57 228.4 221 52.0
BolC6t35426H Brassica oleracea HOM05D004562 ORTHO05D005435 4.5e-57 228.4 221 52.0
Carub.0001s3765 Capsella rubella HOM05D004562 ORTHO05D005435 7.7e-57 227.6 222 53.6
AL3G31090 Arabidopsis lyrata HOM05D004562 ORTHO05D005435 1.0e-56 227.3 239 50.6
Gohir.A03G092980 Gossypium hirsutum HOM05D004562 ORTHO05D005435 5.0e-56 224.9 206 56.8
TPR.G1465 Trifolium pratense HOM05D004562 ORTHO05D005435 1.4e-53 216.9 198 56.1
BraA06t23647Z Brassica rapa HOM05D004562 ORTHO05D005435 3.9e-53 215.3 256 45.7
GSVIVG01008458001 Vitis vinifera HOM05D004562 ORTHO05D005435 8.5e-48 197.6 578 28.4
Lj5A159T41 Lonicera japonica HOM05D004562 ORTHO05D005435 2.4e-42 179.5 213 50.2
Duzib205G1225 Durio zibethinus HOM05D004562 ORTHO05D005435 4.1e-42 178.7 229 48.0
Thecc.03G058700 Theobroma cacao HOM05D004562 ORTHO05D005435 1.6e-41 176.8 146 61.6
SHI19076 Sapria himalayana HOM05D004562 ORTHO05D005435 6.1e-38 164.9 144 59.0
Actinidia18882 Actinidia chinensis HOM05D004562 ORTHO05D005435 7.7e-25 121.3 465 24.1
CAN.G59.9 Capsicum annuum HOM05D004562 ORTHO05D005435 2.3e-24 119.8 165 43.6
CAN.G1490.14 Capsicum annuum HOM05D004562 ORTHO05D005435 5.6e-23 115.2 89 66.3
SEGI_31258 Sequoiadendron giganteum HOM05D004562 ORTHO05D005435 3.0e-21 109.4 208 35.6
Atru.chr9.1669 Acer truncatum HOM05D004562 ORTHO05D005435 2.5e-15 89.7 107 43.9
CAN.G1687.2 Capsicum annuum HOM05D004562 ORTHO05D005435 4.3e-15 89.0 151 40.4
SHI19074 Sapria himalayana HOM05D004562 ORTHO05D005435 1.4e-13 84.0 98 41.8
Gohir.A03G092940 Gossypium hirsutum HOM05D004562 ORTHO05D005435 2.3e-13 83.2 106 44.3
Hma1.2p1_0163F.1_g072990 Hydrangea macrophylla HOM05D004562 ORTHO05D005435 5.2e-13 82.0 251 29.1
Manes.14G172200 Manihot esculenta HOM05D004562 ORTHO05D005435 2.0e-12 80.1 107 41.1
Sabra12G0031500 Salix brachista HOM05D004562 ORTHO05D005435 3.4e-12 79.3 107 40.2
SHI19075 Sapria himalayana HOM05D004562 ORTHO05D005435 6.0e-09 68.6 73 43.8
MCO11G516 Micromonas commoda HOM05D004562 ORTHO05D005435 1.1e-07 64.3 113 38.9


User provided reference genes

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