Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g38560 Chara braunii HOM05D002878 ORTHO05D028643 4.9e-274 947.6 626 100.0
CBR_g49055 Chara braunii HOM05D002878 ORTHO05D028643 1.5e-174 617.1 624 56.7
PRCOL_00000700 Prasinoderma coloniale HOM05D002878 ORTHO05D003649 3.1e-10 71.2 260 28.1
Ah.12g054110 Amaranthus hybridus HOM05D000686 ORTHO05D000512 6.9e-10 70.1 262 24.4
MD07G1003000 Malus domestica HOM05D002878 ORTHO05D003649 4.5e-09 67.4 286 25.5
SGA_v2.0_scaffold260G45879 Striga asiatica HOM05D002878 ORTHO05D003649 5.8e-09 67.0 291 24.7
MD02G1318300 Malus domestica HOM05D002878 ORTHO05D003649 7.6e-09 66.6 278 27.3
PRCOL_00004442 Prasinoderma coloniale HOM05D002878 ORTHO05D014171 1.7e-08 65.5 114 35.1
EL10Ac6g15742 Beta vulgaris HOM05D002878 ORTHO05D003649 2.9e-08 64.7 136 30.9
SalBow5G1901 Salvia bowleyana HOM05D002878 ORTHO05D003649 2.9e-08 64.7 84 44.0
CANSAT01G1312 Cannabis sativa HOM05D002878 ORTHO05D003649 4.9e-08 63.9 294 26.2
PGSC0003DMG400004020 Solanum tuberosum HOM05D002878 ORTHO05D003649 4.9e-08 63.9 94 39.4
Solyc02g090890.4 Solanum lycopersicum HOM05D002878 ORTHO05D003649 6.4e-08 63.5 94 39.4
Sopen02g035540 Solanum pennellii HOM05D002878 ORTHO05D003649 6.4e-08 63.5 94 39.4
CAN.G660.9 Capsicum annuum HOM05D002878 ORTHO05D003649 8.4e-08 63.2 94 40.4
CsaV3_2G016630 Cucumis sativus L. HOM05D002878 ORTHO05D003649 8.4e-08 63.2 278 24.1
Nn6g33809 Nelumbo nucifera HOM05D000686 ORTHO05D000512 1.1e-07 62.8 259 24.7
arahy.Tifrunner.gnm1.ann1.SMB1PG Arachis hypogaea HOM05D000686 ORTHO05D000512 1.4e-07 62.4 264 21.6
MELO3C020872.2 Cucumis melo HOM05D002878 ORTHO05D003649 1.4e-07 62.4 278 24.1
Nn5g30293 Nelumbo nucifera HOM05D002878 ORTHO05D003649 1.4e-07 62.4 85 42.4
Peaxi162Scf00450g00316 Petunia axillaris HOM05D002878 ORTHO05D003649 1.4e-07 62.4 85 43.5
Thecc.01G056500 Theobroma cacao HOM05D002878 ORTHO05D003649 1.4e-07 62.4 278 25.5
Lalb_Chr16g0378561 Lupinus albus HOM05D002878 ORTHO05D003649 1.9e-07 62.0 278 25.9
SalBow1G5413 Salvia bowleyana HOM05D002878 ORTHO05D003649 1.9e-07 62.0 272 25.4
AUR62001926 Chenopodium quinoa HOM05D002878 ORTHO05D003649 2.4e-07 61.6 94 39.4
AUR62003884 Chenopodium quinoa HOM05D002878 ORTHO05D003649 2.4e-07 61.6 94 39.4
MD15G1284500 Malus domestica HOM05D002878 ORTHO05D003649 2.4e-07 61.6 279 24.7
Prupe.7G133100 Prunus persica HOM05D002878 ORTHO05D003649 2.4e-07 61.6 280 24.3
Ah.03g145010 Amaranthus hybridus HOM05D002878 ORTHO05D003649 3.2e-07 61.2 88 43.2
Cre12.g531250 Chlamydomonas reinhardtii HOM05D002878 ORTHO05D011490 3.2e-07 61.2 104 34.6
FvH4_1g16080 Fragaria vesca HOM05D002878 ORTHO05D003649 3.2e-07 61.2 85 42.4
FAN19G0778 Fragaria x ananassa HOM05D002878 ORTHO05D003649 3.2e-07 61.2 85 42.4
Nitab4.5_0002440g0040 Nicotiana tabacum HOM05D002878 ORTHO05D003649 3.2e-07 61.2 94 39.4
QL04p003128 Quercus lobata HOM05D002878 ORTHO05D003649 3.2e-07 61.2 279 25.4
THA.LOC104819235 Tarenaya hassleriana HOM05D002878 ORTHO05D003649 3.2e-07 61.2 85 40.0
CDE10G0029 Ceratophyllum demersum HOM05D002878 ORTHO05D003649 4.2e-07 60.8 85 37.6
HanXRQChr12g0378831 Helianthus annuus HOM05D002878 ORTHO05D003649 4.2e-07 60.8 94 38.3
Medtr5g013260 Medicago truncatula HOM05D000686 ORTHO05D000512 4.2e-07 60.8 158 30.4
PSO541G6485 Papaver somniferum HOM05D000686 ORTHO05D000512 4.2e-07 60.8 261 27.6
TPR.G30697 Trifolium pratense HOM05D002878 ORTHO05D003649 4.2e-07 60.8 279 24.4
TAR633G2681 Trochodendron aralioides HOM05D002878 ORTHO05D003649 4.2e-07 60.8 85 41.2
unitig_27.g25327 Utricularia gibba HOM05D002878 ORTHO05D003649 4.2e-07 60.8 85 41.2
Zm00001eb081460 Zea mays HOM05D002878 ORTHO05D003649 4.2e-07 60.8 94 38.3
BcaB04g20078 Brassica carinata HOM05D002878 ORTHO05D003649 5.5e-07 60.5 85 38.8
BcaC04g23187 Brassica carinata HOM05D002878 ORTHO05D003649 5.5e-07 60.5 85 38.8
BcaC04g23188 Brassica carinata HOM05D002878 ORTHO05D003649 5.5e-07 60.5 85 38.8
A09p09580 Brassica napus HOM05D002878 ORTHO05D003649 5.5e-07 60.5 85 38.8
BraA09t36606Z Brassica rapa HOM05D002878 ORTHO05D003649 5.5e-07 60.5 85 38.8
CARHR280630 Cardamine hirsuta HOM05D002878 ORTHO05D003649 5.5e-07 60.5 85 40.0
CiPaw.01G017900 Carya illinoinensis HOM05D002878 ORTHO05D003649 5.5e-07 60.5 85 41.2
Dinv39845 Davidia involucrata HOM05D002878 ORTHO05D003649 5.5e-07 60.5 278 25.2
Migut.B01363 Erythranthe guttata HOM05D002878 ORTHO05D003649 5.5e-07 60.5 275 25.8
Lsat_1_v5_gn_3_90761 Lactuca sativa HOM05D002878 ORTHO05D003649 5.5e-07 60.5 94 38.3
Oeu031955.2 Olea europaea HOM05D002878 ORTHO05D003649 5.5e-07 60.5 85 42.4
SEGI_14380 Sequoiadendron giganteum HOM05D002878 ORTHO05D003649 5.5e-07 60.5 285 26.0
Zm00001eb423570 Zea mays HOM05D002878 ORTHO05D003649 5.5e-07 60.5 94 38.3
AagrBONN_evm.TU.Sc2ySwM_117.3274 Anthoceros agrestis HOM05D002878 ORTHO05D011490 7.1e-07 60.1 74 44.6
Aqoxy5G01226 Aquilegia oxysepala HOM05D002878 ORTHO05D003649 7.1e-07 60.1 85 38.8
AL8G44330 Arabidopsis lyrata HOM05D002878 ORTHO05D003649 7.1e-07 60.1 85 40.0
AT5G67030 Arabidopsis thaliana HOM05D002878 ORTHO05D003649 7.1e-07 60.1 85 40.0
Cfa027020 Carpinus fangiana HOM05D002878 ORTHO05D028643 7.1e-07 60.1 88 44.3
Cre16.g652050 Chlamydomonas reinhardtii HOM05D000686 ORTHO05D000512 7.1e-07 60.1 265 24.2
Thhalv10003769m.g Eutrema salsugineum HOM05D002878 ORTHO05D003649 7.1e-07 60.1 85 40.0
FAN23G1030 Fragaria x ananassa HOM05D002878 ORTHO05D003649 7.1e-07 60.1 85 41.2
FAN26G1304 Fragaria x ananassa HOM05D002878 ORTHO05D003649 7.1e-07 60.1 85 41.2
FAN28G1157 Fragaria x ananassa HOM05D002878 ORTHO05D003649 7.1e-07 60.1 85 41.2
Lj4C149T12 Lonicera japonica HOM05D002878 ORTHO05D003649 7.1e-07 60.1 85 42.4
PSO170G1040 Papaver somniferum HOM05D002878 ORTHO05D003649 7.1e-07 60.1 85 41.2
PSO210G3686 Papaver somniferum HOM05D002878 ORTHO05D003649 7.1e-07 60.1 85 41.2
RcHm_v2.0_Chr2g0105701 Rosa chinensis HOM05D002878 ORTHO05D003649 7.1e-07 60.1 85 41.2
Aa31LG1G15560 Aethionema arabicum HOM05D002878 ORTHO05D003649 9.3e-07 59.7 85 40.0
ATR1126G066 Amborella trichopoda HOM05D002878 ORTHO05D003649 9.3e-07 59.7 85 38.8
BolC9t54020H Brassica oleracea HOM05D002878 ORTHO05D003649 9.3e-07 59.7 85 38.8
Rhsim10G0117200 Rhododendron simsii HOM05D002878 ORTHO05D003649 9.3e-07 59.7 85 42.4
vmacro13619 Vaccinium macrocarpon HOM05D002878 ORTHO05D003649 9.3e-07 59.7 280 25.7
CSS0041624 Camellia sinensis var. sinensis HOM05D002878 ORTHO05D003649 1.2e-06 59.3 280 26.1
Cre12.g493700 Chlamydomonas reinhardtii HOM05D002878 ORTHO05D014171 1.2e-06 59.3 132 28.8
Gohir.D11G199300 Gossypium hirsutum HOM05D002878 ORTHO05D003649 1.2e-06 59.3 120 32.5
HanXRQChr04g0117341 Helianthus annuus HOM05D002878 ORTHO05D003649 1.2e-06 59.3 280 26.4
MBI03_g13473_MAGBIO Magnolia biondii HOM05D002878 ORTHO05D003649 1.2e-06 59.3 85 40.0
QL04p000093 Quercus lobata HOM05D002878 ORTHO05D003649 1.2e-06 59.3 279 25.1
BcaB02g09963 Brassica carinata HOM05D002878 ORTHO05D003649 1.6e-06 58.9 85 38.8
Dinv39846 Davidia involucrata HOM05D002878 ORTHO05D003649 1.6e-06 58.9 85 41.2
Hma1.2p1_0017F.1_g011360 Hydrangea macrophylla HOM05D002878 ORTHO05D003649 1.6e-06 58.9 85 42.4
Os04g0448900 Oryza sativa ssp. japonica HOM05D002878 ORTHO05D003649 1.6e-06 58.9 94 38.3
Pp3c12_10330 Physcomitrium patens HOM05D002878 ORTHO05D003649 1.6e-06 58.9 80 46.2
SGA_v2.0_scaffold15G07306 Striga asiatica HOM05D002878 ORTHO05D003649 1.6e-06 58.9 279 24.4
HPP92_010971 Vanilla planifolia HOM05D002878 ORTHO05D003649 1.6e-06 58.9 85 38.8
GSVIVG01001372001 Vitis vinifera HOM05D002878 ORTHO05D003649 1.6e-06 58.9 279 25.8
MSTRG.2882 Avicennia marina HOM05D002878 ORTHO05D003649 2.1e-06 58.5 85 41.2
BcaC04g23185 Brassica carinata HOM05D002878 ORTHO05D003649 2.1e-06 58.5 85 38.8
BcaC06g34781 Brassica carinata HOM05D002878 ORTHO05D003649 2.1e-06 58.5 85 38.8
A07p16900 Brassica napus HOM05D002878 ORTHO05D003649 2.1e-06 58.5 85 38.8
C07p24710 Brassica napus HOM05D002878 ORTHO05D003649 2.1e-06 58.5 85 38.8
BolC7t42992H Brassica oleracea HOM05D002878 ORTHO05D003649 2.1e-06 58.5 85 38.8
BraA07t29416Z Brassica rapa HOM05D002878 ORTHO05D003649 2.1e-06 58.5 85 38.8
CSS0031288 Camellia sinensis var. sinensis HOM05D002878 ORTHO05D003649 2.1e-06 58.5 85 40.0
Dinv43928 Davidia involucrata HOM05D002878 ORTHO05D003649 2.1e-06 58.5 273 25.3
Eucgr.I00923 Eucalyptus grandis HOM05D002878 ORTHO05D003649 2.1e-06 58.5 288 24.7
Nitab4.5_0002016g0120 Nicotiana tabacum HOM05D002878 ORTHO05D003649 2.1e-06 58.5 94 37.2
QL06p041333 Quercus lobata HOM05D002878 ORTHO05D003649 2.1e-06 58.5 85 41.2
TWI09G0920 Tripterygium wilfordii HOM05D002878 ORTHO05D003649 2.1e-06 58.5 85 40.0
MSTRG.23744 Avicennia marina HOM05D002878 ORTHO05D003649 2.7e-06 58.2 85 41.2
DCAR_025735 Daucus carota HOM05D002878 ORTHO05D003649 2.7e-06 58.2 85 38.8
ECA246G0578 Erigeron canadensis HOM05D002878 ORTHO05D003649 2.7e-06 58.2 88 39.8
MBI01_g33890_MAGBIO Magnolia biondii HOM05D002878 ORTHO05D003649 2.7e-06 58.2 85 42.4
Medtr4g022850 Medicago truncatula HOM05D002878 ORTHO05D003649 2.7e-06 58.2 272 26.1
PSO384G3105 Papaver somniferum HOM05D002878 ORTHO05D003649 2.7e-06 58.2 84 42.9
Sc07g0000780 Simmondsia chinensis HOM05D002878 ORTHO05D003649 2.7e-06 58.2 85 42.4
Eucgr.I00922 Eucalyptus grandis HOM05D002878 ORTHO05D003649 3.5e-06 57.8 294 24.8
Sp2g29640 Schrenkiella parvula HOM05D002878 ORTHO05D003649 3.5e-06 57.8 85 38.8
vmacro05340 Vaccinium macrocarpon HOM05D002878 ORTHO05D003649 3.5e-06 57.8 85 41.2
Lj2g0007356 Lotus japonicus HOM05D002878 ORTHO05D003649 4.6e-06 57.4 85 37.6
Sc01g0008120 Simmondsia chinensis HOM05D000686 ORTHO05D000512 4.6e-06 57.4 258 21.7
Cfa004025 Carpinus fangiana HOM05D002878 ORTHO05D003649 6.0e-06 57.0 85 38.8
Ca_22162_v3 Cicer arietinum L. HOM05D002878 ORTHO05D003649 6.0e-06 57.0 85 37.6
Ca_24768_v3 Cicer arietinum L. HOM05D002878 ORTHO05D003649 6.0e-06 57.0 85 37.6
Haze_15395 Corylus avellana HOM05D002878 ORTHO05D003649 6.0e-06 57.0 85 38.8
Duzib187G0827 Durio zibethinus HOM05D002878 ORTHO05D003649 6.0e-06 57.0 85 38.8
Migut.H00431 Erythranthe guttata HOM05D002878 ORTHO05D003649 6.0e-06 57.0 85 41.2
Lj3g0027459 Lotus japonicus HOM05D002878 ORTHO05D003649 6.0e-06 57.0 277 24.2
Psat0s1281g0080 Pisum sativum HOM05D002878 ORTHO05D003649 6.0e-06 57.0 85 38.8
Sed0027368 Sechium edule HOM05D002878 ORTHO05D003649 6.0e-06 57.0 85 37.6
Sc08g0002800 Simmondsia chinensis HOM05D000686 ORTHO05D000512 6.0e-06 57.0 133 30.1
Actinidia16481 Actinidia chinensis HOM05D002878 ORTHO05D003649 7.9e-06 56.6 85 40.0
Ciclev10025089m.g Citrus clementina HOM05D002878 ORTHO05D003649 7.9e-06 56.6 85 40.0
Migut.K00767 Erythranthe guttata HOM05D002878 ORTHO05D003649 7.9e-06 56.6 85 38.8
MD11G1231900 Malus domestica HOM05D000686 ORTHO05D000512 7.9e-06 56.6 119 32.8
Pp3c4_13840 Physcomitrium patens HOM05D002878 ORTHO05D003649 7.9e-06 56.6 80 45.0
TPR.G19064 Trifolium pratense HOM05D002878 ORTHO05D003649 7.9e-06 56.6 85 38.8
GSVIVG01022128001 Vitis vinifera HOM05D002878 ORTHO05D003649 7.9e-06 56.6 85 38.8


User provided reference genes

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