Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g38471 Chara braunii HOM05D003568 ORTHO05D004104 0.0e+00 1643.2 875 100.0
AagrBONN_evm.TU.Sc2ySwM_117.807 Anthoceros agrestis HOM05D003568 ORTHO05D004104 9.6e-236 820.8 866 54.6
SEGI_32899 Sequoiadendron giganteum HOM05D003568 ORTHO05D004104 6.9e-234 814.7 866 55.3
Mapoly0070s0084 Marchantia polymorpha HOM05D003568 ORTHO05D004104 1.0e-224 784.3 879 52.4
Duzib205G0971 Durio zibethinus HOM05D003568 ORTHO05D004104 2.5e-223 779.6 870 53.1
Gohir.A12G275800 Gossypium hirsutum HOM05D003568 ORTHO05D004104 1.2e-222 777.3 869 52.4
Eucgr.E00099 Eucalyptus grandis HOM05D003568 ORTHO05D004104 2.7e-222 776.2 868 52.1
Gohir.D12G276500 Gossypium hirsutum HOM05D003568 ORTHO05D004104 3.6e-222 775.8 870 52.2
Gorai.008G297000 Gossypium raimondii HOM05D003568 ORTHO05D004104 3.6e-222 775.8 870 52.2
Aqoxy2G00934 Aquilegia oxysepala HOM05D003568 ORTHO05D004104 7.9e-222 774.6 874 52.5
Sc03g0008850 Simmondsia chinensis HOM05D003568 ORTHO05D004104 1.4e-221 773.9 876 52.3
GSVIVG01026964001 Vitis vinifera HOM05D003568 ORTHO05D004104 3.0e-221 772.7 875 52.1
PGR042G3260 Punica granatum HOM05D003568 ORTHO05D004104 3.9e-221 772.3 873 51.7
ATR0829G125 Amborella trichopoda HOM05D003568 ORTHO05D004104 5.1e-221 771.9 868 52.5
PSO266G0033 Papaver somniferum HOM05D003568 ORTHO05D004104 6.7e-221 771.5 872 52.8
Thecc.06G000300 Theobroma cacao HOM05D003568 ORTHO05D004104 8.8e-221 771.2 871 52.7
CANSAT56G2290 Cannabis sativa HOM05D003568 ORTHO05D004104 5.7e-220 768.5 874 52.3
CSS0027239 Camellia sinensis var. sinensis HOM05D003568 ORTHO05D004104 9.7e-220 767.7 877 52.1
Nn1g01682 Nelumbo nucifera HOM05D003568 ORTHO05D004104 1.7e-219 766.9 879 52.0
CARHR200740 Cardamine hirsuta HOM05D003568 ORTHO05D004104 3.7e-219 765.8 874 52.2
EL10Ac5g12970 Beta vulgaris HOM05D003568 ORTHO05D004104 4.8e-219 765.4 876 52.2
Carub.0006s1087 Capsella rubella HOM05D003568 ORTHO05D004104 4.8e-219 765.4 874 52.1
THA.LOC104811828 Tarenaya hassleriana HOM05D003568 ORTHO05D004104 6.3e-219 765.0 876 52.4
MELO3C006082.2 Cucumis melo HOM05D003568 ORTHO05D004104 1.4e-218 763.8 878 51.9
AL6G23170 Arabidopsis lyrata HOM05D003568 ORTHO05D004104 1.8e-218 763.5 874 52.1
CsaV3_3G008620 Cucumis sativus L. HOM05D003568 ORTHO05D004104 1.8e-218 763.5 878 51.9
Duzib068G0821 Durio zibethinus HOM05D003568 ORTHO05D004104 3.1e-218 762.7 869 52.6
Potri.014G090100 Populus trichocarpa HOM05D003568 ORTHO05D004104 5.3e-218 761.9 871 52.1
QL04p055468 Quercus lobata HOM05D003568 ORTHO05D004104 5.3e-218 761.9 877 51.5
CiPaw.02G034600 Carya illinoinensis HOM05D003568 ORTHO05D004104 6.9e-218 761.5 874 51.8
Ciclev10018853m.g Citrus clementina HOM05D003568 ORTHO05D004104 6.9e-218 761.5 870 51.6
MD01G1071200 Malus domestica HOM05D003568 ORTHO05D004104 9.1e-218 761.1 869 52.0
TWI59G1008 Tripterygium wilfordii HOM05D003568 ORTHO05D004104 9.1e-218 761.1 872 51.8
PSO478G3452 Papaver somniferum HOM05D003568 ORTHO05D004104 3.4e-217 759.2 906 50.9
Prupe.2G177200 Prunus persica HOM05D003568 ORTHO05D004104 4.5e-217 758.8 870 52.1
Cpa.g.sc184.32 Carica papaya HOM05D003568 ORTHO05D004104 5.9e-217 758.4 875 51.9
Thhalv10012686m.g Eutrema salsugineum HOM05D003568 ORTHO05D004104 7.7e-217 758.1 874 51.9
VMungo0331G1030 Vigna mungo HOM05D003568 ORTHO05D004104 7.7e-217 758.1 869 51.6
Thecc.03G000600 Theobroma cacao HOM05D003568 ORTHO05D004104 1.3e-216 757.3 869 52.8
Sp6g31270 Schrenkiella parvula HOM05D003568 ORTHO05D004104 2.2e-216 756.5 874 52.1
Potri.002G164100 Populus trichocarpa HOM05D003568 ORTHO05D004104 2.9e-216 756.1 876 51.6
Sabra14G0065400 Salix brachista HOM05D003568 ORTHO05D004104 5.0e-216 755.4 882 51.0
FAN03G0275 Fragaria x ananassa HOM05D003568 ORTHO05D004104 8.5e-216 754.6 870 51.5
FAN06G4614 Fragaria x ananassa HOM05D003568 ORTHO05D004104 1.1e-215 754.2 870 51.1
Hund23292 Selenicereus undatus HOM05D003568 ORTHO05D004104 1.1e-215 754.2 865 51.4
Manes.05G029701 Manihot esculenta HOM05D003568 ORTHO05D004104 1.4e-215 753.8 872 51.4
ClCG05G001260 Citrullus lanatus HOM05D003568 ORTHO05D004104 1.9e-215 753.4 890 50.9
FvH4_7g15330 Fragaria vesca HOM05D003568 ORTHO05D004104 1.9e-215 753.4 870 51.4
vmacro13231 Vaccinium macrocarpon HOM05D003568 ORTHO05D004104 1.9e-215 753.4 887 49.9
Sed0000810 Sechium edule HOM05D003568 ORTHO05D004104 3.2e-215 752.7 874 51.5
Atru.chr5.579 Acer truncatum HOM05D003568 ORTHO05D004104 5.5e-215 751.9 867 51.0
Aa31LG3G14860 Aethionema arabicum HOM05D003568 ORTHO05D004104 9.4e-215 751.1 872 51.4
FAN06G0334 Fragaria x ananassa HOM05D003568 ORTHO05D004104 9.4e-215 751.1 870 51.3
C09p64520 Brassica napus HOM05D003568 ORTHO05D004104 1.6e-214 750.4 881 51.4
FAN01G2394 Fragaria x ananassa HOM05D003568 ORTHO05D004104 1.6e-214 750.4 905 50.5
BolC9t59286H Brassica oleracea HOM05D003568 ORTHO05D004104 3.6e-214 749.2 881 51.3
Medtr8g023330 Medicago truncatula HOM05D003568 ORTHO05D004104 3.6e-214 749.2 804 53.9
RcHm_v2.0_Chr1g0357661 Rosa chinensis HOM05D003568 ORTHO05D004104 3.6e-214 749.2 870 51.4
Manes.01G252500 Manihot esculenta HOM05D003568 ORTHO05D004104 1.0e-213 747.7 866 51.5
SMO329G0014 Selaginella moellendorffii HOM05D003568 ORTHO05D004104 1.0e-213 747.7 803 52.3
AT5G12370 Arabidopsis thaliana HOM05D003568 ORTHO05D004104 2.3e-213 746.5 874 51.1
Ca_23448_v3 Cicer arietinum L. HOM05D003568 ORTHO05D004104 2.3e-213 746.5 871 51.0
HPP92_003241 Vanilla planifolia HOM05D003568 ORTHO05D004104 2.3e-213 746.5 866 50.8
BraA03t09896Z Brassica rapa HOM05D003568 ORTHO05D004104 3.0e-213 746.1 873 51.2
HanXRQChr04g0120781 Helianthus annuus HOM05D003568 ORTHO05D004104 3.9e-213 745.7 872 51.0
A10p25450 Brassica napus HOM05D003568 ORTHO05D004104 6.7e-213 745.0 875 51.7
BraA10t44609Z Brassica rapa HOM05D003568 ORTHO05D004104 6.7e-213 745.0 875 51.7
BolC3t13154H Brassica oleracea HOM05D003568 ORTHO05D004104 8.8e-213 744.6 874 50.7
Phvul.010G123000 Phaseolus vulgaris HOM05D003568 ORTHO05D004104 2.0e-212 743.4 869 50.4
Lj3g0009129 Lotus japonicus HOM05D003568 ORTHO05D004104 4.4e-212 742.3 868 51.2
Cc08_g01740 Coffea canephora HOM05D003568 ORTHO05D004104 5.7e-212 741.9 870 51.7
Glyma.07G046100 Glycine max HOM05D003568 ORTHO05D004104 1.3e-211 740.7 872 50.8
BcaB01g05405 Brassica carinata HOM05D003568 ORTHO05D004104 2.8e-211 739.6 871 51.2
ECA236G4463 Erigeron canadensis HOM05D003568 ORTHO05D004104 3.7e-211 739.2 875 50.4
Atru.chr5.561 Acer truncatum HOM05D003568 ORTHO05D004104 4.8e-211 738.8 890 49.7
Oeu015218.3 Olea europaea HOM05D003568 ORTHO05D004104 4.8e-211 738.8 872 50.8
Gorai.006G064200 Gossypium raimondii HOM05D003568 ORTHO05D004104 8.2e-211 738.0 870 49.5
Lalb_Chr18g0044861 Lupinus albus HOM05D003568 ORTHO05D004104 1.1e-210 737.6 875 50.4
DCAR_006948 Daucus carota HOM05D003568 ORTHO05D004104 1.8e-210 736.9 872 50.9
MD07G1131500 Malus domestica HOM05D003568 ORTHO05D004104 1.8e-210 736.9 869 51.0
Nitab4.5_0000171g0380 Nicotiana tabacum HOM05D003568 ORTHO05D004104 3.1e-210 736.1 878 50.6
Peaxi162Scf00073g02118 Petunia axillaris HOM05D003568 ORTHO05D004104 4.1e-210 735.7 882 50.2
CSS0021365 Camellia sinensis var. sinensis HOM05D003568 ORTHO05D004104 9.1e-210 734.6 870 49.7
Gohir.D09G046200 Gossypium hirsutum HOM05D003568 ORTHO05D004104 9.1e-210 734.6 870 49.4
COL.COLO4_15385 Corchorus olitorius HOM05D003568 ORTHO05D004104 1.2e-209 734.2 855 51.8
A03p05590 Brassica napus HOM05D003568 ORTHO05D004104 4.5e-209 732.3 898 49.8
C03p06540 Brassica napus HOM05D003568 ORTHO05D004104 4.5e-209 732.3 898 49.3
CSS0044044 Camellia sinensis var. sinensis HOM05D003568 ORTHO05D004104 4.5e-209 732.3 870 49.5
Sed0017270 Sechium edule HOM05D003568 ORTHO05D004104 1.0e-208 731.1 869 49.8
Sopen03g025390 Solanum pennellii HOM05D003568 ORTHO05D004104 2.9e-208 729.6 880 51.2
PGSC0003DMG400005252 Solanum tuberosum HOM05D003568 ORTHO05D004104 1.1e-207 727.6 880 50.9
MSTRG.27756 Avicennia marina HOM05D003568 ORTHO05D004104 4.2e-207 725.7 870 48.7
TAR375G0541 Trochodendron aralioides HOM05D003568 ORTHO05D004104 4.2e-207 725.7 876 50.9
Os12g0238100 Oryza sativa ssp. japonica HOM05D003568 ORTHO05D004104 5.5e-207 725.3 807 50.1
arahy.Tifrunner.gnm1.ann1.Z56S5U Arachis hypogaea HOM05D003568 ORTHO05D004104 9.4e-207 724.5 868 50.1
Solyc03g095410.3 Solanum lycopersicum HOM05D003568 ORTHO05D004104 1.2e-206 724.2 879 50.9
SGA_v2.0_scaffold67G22717 Striga asiatica HOM05D003568 ORTHO05D004104 1.2e-206 724.2 867 50.6
AUR62030738 Chenopodium quinoa HOM05D003568 ORTHO05D004104 3.0e-205 719.5 954 47.2
Glyma.16G014200 Glycine max HOM05D003568 ORTHO05D004104 3.0e-205 719.5 866 50.0
Lalb_Chr17g0343201 Lupinus albus HOM05D003568 ORTHO05D004104 3.9e-205 719.2 866 48.2
CAN.G165.6 Capsicum annuum HOM05D003568 ORTHO05D004104 6.7e-205 718.4 877 50.4
Nn6g35074 Nelumbo nucifera HOM05D003568 ORTHO05D004104 8.8e-205 718.0 854 50.1
unitig_21.g20340 Utricularia gibba HOM05D003568 ORTHO05D004104 8.8e-205 718.0 886 48.1
Rhsim07G0010700 Rhododendron simsii HOM05D003568 ORTHO05D004104 3.3e-204 716.1 971 45.8
Zm00001eb133590 Zea mays HOM05D003568 ORTHO05D004104 5.7e-204 715.3 782 51.5
arahy.Tifrunner.gnm1.ann1.PRYL24 Arachis hypogaea HOM05D003568 ORTHO05D004104 1.4e-202 710.7 868 49.8
Migut.N01148 Erythranthe guttata HOM05D003568 ORTHO05D004104 4.5e-201 705.7 871 50.1
TPR.G21815 Trifolium pratense HOM05D003568 ORTHO05D004104 2.2e-200 703.4 866 49.3
Sabra02G0147000 Salix brachista HOM05D003568 ORTHO05D004104 6.5e-200 701.8 944 46.2
AUR62036376 Chenopodium quinoa HOM05D003568 ORTHO05D004104 1.9e-199 700.3 879 48.9
SalBow6G0922 Salvia bowleyana HOM05D003568 ORTHO05D004104 1.3e-192 677.6 875 45.7
SalBow6G4826 Salvia bowleyana HOM05D003568 ORTHO05D004104 2.9e-192 676.4 874 45.8
Sed0024683 Sechium edule HOM05D003568 ORTHO05D004104 2.9e-192 676.4 752 51.3
Lj9A588G62 Lonicera japonica HOM05D003568 ORTHO05D004104 3.8e-192 676.0 868 46.7
Nitab4.5_0010629g0020 Nicotiana tabacum HOM05D003568 ORTHO05D004104 1.5e-191 674.1 856 48.8
Hund02118 Selenicereus undatus HOM05D003568 ORTHO05D004104 7.2e-191 671.8 840 48.7
Lsat_1_v5_gn_7_3960 Lactuca sativa HOM05D003568 ORTHO05D004104 2.7e-190 669.8 875 47.8
Lj7A507T47 Lonicera japonica HOM05D003568 ORTHO05D004104 8.0e-190 668.3 891 45.9
Peaxi162Scf00154g00427 Petunia axillaris HOM05D003568 ORTHO05D004104 1.4e-189 667.5 908 46.4
Dinv27398 Davidia involucrata HOM05D003568 ORTHO05D004104 3.0e-189 666.4 789 50.8
HanXRQChr13g0415591 Helianthus annuus HOM05D003568 ORTHO05D004104 1.5e-188 664.1 863 44.5
CDE07G1174 Ceratophyllum demersum HOM05D003568 ORTHO05D004104 2.2e-187 660.2 783 50.6
HanXRQChr02g0038861 Helianthus annuus HOM05D003568 ORTHO05D004104 1.4e-186 657.5 863 44.5
Lsat_1_v5_gn_3_138540 Lactuca sativa HOM05D003568 ORTHO05D004104 6.6e-184 648.7 860 43.7
ECA238G2843 Erigeron canadensis HOM05D003568 ORTHO05D004104 1.5e-183 647.5 865 44.6
Haze_15562 Corylus avellana HOM05D003568 ORTHO05D004104 6.1e-182 642.1 971 43.8
Psat4g164920 Pisum sativum HOM05D003568 ORTHO05D004104 1.3e-179 634.4 804 48.5
Pp3c7_5960 Physcomitrium patens HOM05D003568 ORTHO05D004104 1.6e-177 627.5 761 49.8
Gohir.A09G045200 Gossypium hirsutum HOM05D003568 ORTHO05D004104 5.9e-177 625.5 738 49.5
Sopen11g021810 Solanum pennellii HOM05D003568 ORTHO05D004104 2.5e-175 620.2 840 45.4
CAN.G45.13 Capsicum annuum HOM05D003568 ORTHO05D004104 2.3e-173 613.6 791 49.7
Solyc11g050710.2 Solanum lycopersicum HOM05D003568 ORTHO05D004104 8.6e-168 595.1 824 46.4
Oeu036591.1 Olea europaea HOM05D003568 ORTHO05D004104 1.2e-164 584.7 862 43.7
COL.COLO4_22311 Corchorus olitorius HOM05D003568 ORTHO05D004104 4.4e-164 582.8 706 49.4
FAN10G2647 Fragaria x ananassa HOM05D003568 ORTHO05D004104 4.1e-162 576.2 663 51.4
Sopen10g009070 Solanum pennellii HOM05D003568 ORTHO05D004104 1.7e-160 570.9 853 44.5
TAR374G0165 Trochodendron aralioides HOM05D003568 ORTHO05D004104 1.3e-155 554.7 617 52.5
Pp3c17_2120 Physcomitrium patens HOM05D003568 ORTHO05D004104 4.3e-151 539.7 819 41.6
FAN10G2437 Fragaria x ananassa HOM05D003568 ORTHO05D004104 4.2e-146 523.1 856 41.2
MBI03_g34513_MAGBIO Magnolia biondii HOM05D003568 ORTHO05D004104 7.1e-146 522.3 592 52.4
AagrBONN_evm.TU.Sc2ySwM_362.1439 Anthoceros agrestis HOM05D003568 ORTHO05D004104 1.1e-133 481.9 839 37.7
Nitab4.5_0006926g0010 Nicotiana tabacum HOM05D003568 ORTHO05D004104 1.2e-129 468.4 891 38.6
Nitab4.5_0004323g0080 Nicotiana tabacum HOM05D003568 ORTHO05D004104 8.4e-123 445.7 585 47.2
Sopen10g009040 Solanum pennellii HOM05D003568 ORTHO05D004104 2.7e-121 440.7 877 37.4
Solyc10g019140.1 Solanum lycopersicum HOM05D003568 ORTHO05D004104 1.3e-118 431.8 601 45.3
Sopen10g009080 Solanum pennellii HOM05D003568 ORTHO05D004104 3.4e-116 423.7 856 37.7
Dinv09574 Davidia involucrata HOM05D003568 ORTHO05D004104 4.8e-110 403.3 561 44.0
Pp3c10_23750 Physcomitrium patens HOM05D003568 ORTHO05D004104 3.4e-108 397.1 879 34.8
Sopen00g003310 Solanum pennellii HOM05D003568 ORTHO05D004104 1.5e-100 371.7 868 34.2
Solyc10g019110.2 Solanum lycopersicum HOM05D003568 ORTHO05D004104 4.2e-90 337.0 622 38.4
Sopen10g009060 Solanum pennellii HOM05D003568 ORTHO05D004104 2.7e-89 334.3 483 43.7
PSO478G4032 Papaver somniferum HOM05D003568 ORTHO05D004104 5.3e-85 320.1 531 39.2
Dinv09575 Davidia involucrata HOM05D003568 ORTHO05D004104 3.6e-81 307.4 311 54.3
Sopen00g004930 Solanum pennellii HOM05D003568 ORTHO05D004104 2.0e-52 211.8 306 44.1
SEGI_20614 Sequoiadendron giganteum HOM05D003568 ORTHO05D004104 2.2e-46 191.8 205 55.6
CAN.G77.8 Capsicum annuum HOM05D003568 ORTHO05D004104 3.2e-45 188.0 242 50.4
Hma1.2p1_0335F.1_g128910 Hydrangea macrophylla HOM05D003568 ORTHO05D004104 1.3e-38 166.0 215 43.7
PRCOL_00002354 Prasinoderma coloniale HOM05D003568 ORTHO05D004104 3.0e-35 154.8 883 23.8
Ah.12g059250 Amaranthus hybridus HOM05D003568 ORTHO05D004104 7.3e-34 150.2 155 52.9
Haze_19031 Corylus avellana HOM05D003568 ORTHO05D004104 1.9e-26 125.6 274 38.3
Psat3g201360 Pisum sativum HOM05D003568 ORTHO05D004104 1.6e-25 122.5 156 51.9
Ah.12g059260 Amaranthus hybridus HOM05D003568 ORTHO05D004104 6.0e-20 104.0 86 62.8
Solyc10g019130.3 Solanum lycopersicum HOM05D003568 ORTHO05D004104 7.9e-20 103.6 97 54.6
Oeu015217.1 Olea europaea HOM05D003568 ORTHO05D004104 1.3e-19 102.8 83 61.4
CDE06G2354 Ceratophyllum demersum HOM05D003568 ORTHO05D004104 2.1e-17 95.5 102 52.0
MCO10G270 Micromonas commoda HOM05D003568 ORTHO05D004104 9.0e-16 90.1 419 25.5
QL05p039330 Quercus lobata HOM05D003568 ORTHO05D004104 1.3e-14 86.3 136 48.5
Cre12.g551801 Chlamydomonas reinhardtii HOM05D003568 ORTHO05D004104 4.2e-13 81.3 210 29.5
VMungo1383G1077 Vigna mungo HOM05D003568 ORTHO05D004104 6.0e-12 77.4 92 41.3
Solyc10g019100.2 Solanum lycopersicum HOM05D003568 ORTHO05D004104 1.3e-11 76.3 53 64.2
Haze_11234 Corylus avellana HOM05D001460 ORTHO05D001337 1.8e-08 65.9 121 40.5
Glyma.07G162100 Glycine max HOM05D003568 ORTHO05D004104 3.1e-08 65.1 184 28.8
RcHm_v2.0_Chr1g0375661 Rosa chinensis HOM05D003568 ORTHO05D004104 6.9e-08 63.9 97 47.4
HanXRQChr14g0445661 Helianthus annuus HOM05D003568 ORTHO05D004104 7.6e-07 60.5 113 34.5
ClCG05G001230 Citrullus lanatus HOM05D003568 ORTHO05D004104 1.0e-06 60.1 139 29.5
CBR_g24150 Chara braunii HOM05D003568 ORTHO05D004104 2.2e-06 58.9 124 27.4
SalBow1G6610 Salvia bowleyana HOM05D019231 ORTHO05D019643 3.8e-06 58.2 51 56.9
SEGI_22298 Sequoiadendron giganteum HOM05D003568 ORTHO05D004104 8.4e-06 57.0 88 40.9
Solyc10g019120.1 Solanum lycopersicum HOM05D003568 ORTHO05D004104 8.4e-06 57.0 114 36.8


User provided reference genes

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