Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g38120 Chara braunii HOM05D005619 ORTHO05D006696 9.9e-109 396.7 193 100.0
MBI05_g05306_MAGBIO Magnolia biondii HOM05D005619 ORTHO05D006696 9.1e-46 187.6 185 46.5
Sc11g0001040 Simmondsia chinensis HOM05D005619 ORTHO05D006696 7.7e-45 184.5 185 47.0
TAR369G0168 Trochodendron aralioides HOM05D005619 ORTHO05D006696 7.7e-45 184.5 185 47.0
Hund13861 Selenicereus undatus HOM05D005619 ORTHO05D006696 2.2e-44 183.0 185 45.9
Os08g0274700 Oryza sativa ssp. japonica HOM05D005619 ORTHO05D006696 1.9e-43 179.9 186 45.7
GSVIVG01032822001 Vitis vinifera HOM05D005619 ORTHO05D006696 2.5e-43 179.5 187 44.4
EL10Ac2g04534 Beta vulgaris HOM05D005619 ORTHO05D006696 4.2e-43 178.7 185 45.9
AUR62034382 Chenopodium quinoa HOM05D005619 ORTHO05D006696 4.2e-43 178.7 184 46.2
Nn2g11500 Nelumbo nucifera HOM05D005619 ORTHO05D006696 5.5e-43 178.3 185 44.9
SMO356G0622 Selaginella moellendorffii HOM05D005619 ORTHO05D006696 7.2e-43 177.9 188 43.6
Pp3c25_12660 Physcomitrium patens HOM05D005619 ORTHO05D006696 9.4e-43 177.6 188 45.7
Mapoly0034s0059 Marchantia polymorpha HOM05D005619 ORTHO05D006696 1.2e-42 177.2 191 45.0
AUR62022323 Chenopodium quinoa HOM05D005619 ORTHO05D006696 4.7e-42 175.3 184 45.1
Mapoly0053s0030 Marchantia polymorpha HOM05D005619 ORTHO05D006696 8.0e-42 174.5 191 44.0
Zm00001eb412290 Zea mays HOM05D005619 ORTHO05D006696 8.0e-42 174.5 186 45.2
Aqoxy5G02842 Aquilegia oxysepala HOM05D005619 ORTHO05D006696 1.8e-41 173.3 187 45.5
Zm00001eb198650 Zea mays HOM05D005619 ORTHO05D006696 5.2e-41 171.8 186 45.2
HPP92_000422 Vanilla planifolia HOM05D000755 ORTHO05D006696 6.8e-41 171.4 185 44.9
ATR0481G004 Amborella trichopoda HOM05D005619 ORTHO05D006696 1.2e-40 170.6 185 43.8
Oeu057772.1 Olea europaea HOM05D005619 ORTHO05D006696 1.2e-40 170.6 189 43.9
Dinv16155 Davidia involucrata HOM05D005619 ORTHO05D006696 1.5e-40 170.2 185 43.8
HPP92_000355 Vanilla planifolia HOM05D000755 ORTHO05D000642 2.6e-40 169.5 185 44.9
CARHR135030 Cardamine hirsuta HOM05D005619 ORTHO05D006696 3.4e-40 169.1 187 43.9
Eucgr.G03057 Eucalyptus grandis HOM05D005619 ORTHO05D006696 3.4e-40 169.1 185 43.2
RcHm_v2.0_Chr1g0370121 Rosa chinensis HOM05D005619 ORTHO05D006696 3.4e-40 169.1 187 43.3
Atru.chr12.29 Acer truncatum HOM05D005619 ORTHO05D006696 4.4e-40 168.7 186 41.4
Carub.0005s2221 Capsella rubella HOM05D005619 ORTHO05D006696 5.7e-40 168.3 185 45.9
CDE04G2394 Ceratophyllum demersum HOM05D005619 ORTHO05D006696 5.7e-40 168.3 184 42.9
Thhalv10017287m.g Eutrema salsugineum HOM05D005619 ORTHO05D006696 5.7e-40 168.3 187 44.4
FvH4_7g24440 Fragaria vesca HOM05D005619 ORTHO05D006696 5.7e-40 168.3 187 43.3
Aqoxy4G02564 Aquilegia oxysepala HOM05D005619 ORTHO05D006696 1.7e-39 166.8 187 43.3
PSO339G2325 Papaver somniferum HOM05D005619 ORTHO05D006696 1.7e-39 166.8 185 43.2
AagrBONN_evm.TU.Sc2ySwM_228.5247 Anthoceros agrestis HOM05D005619 ORTHO05D006696 2.2e-39 166.4 185 45.9
CARHR165540 Cardamine hirsuta HOM05D005619 ORTHO05D006696 2.2e-39 166.4 185 43.8
FAN01G2425 Fragaria x ananassa HOM05D005619 ORTHO05D006696 2.2e-39 166.4 187 42.8
MSTRG.870 Avicennia marina HOM05D005619 ORTHO05D006696 2.8e-39 166.0 187 42.8
Medtr3g070470 Medicago truncatula HOM05D005619 ORTHO05D006696 2.8e-39 166.0 187 42.2
FAN10G0566 Fragaria x ananassa HOM05D005619 ORTHO05D006696 3.7e-39 165.6 187 42.2
Sed0003089 Sechium edule HOM05D005619 ORTHO05D006696 3.7e-39 165.6 185 42.7
THA.LOC104824313 Tarenaya hassleriana HOM05D005619 ORTHO05D006696 3.7e-39 165.6 185 41.6
Migut.E00386 Erythranthe guttata HOM05D005619 ORTHO05D006696 1.4e-38 163.7 189 42.3
PGR142G0483 Punica granatum HOM05D005619 ORTHO05D006696 1.4e-38 163.7 187 41.2
Cpa.g.sc19.176 Carica papaya HOM05D005619 ORTHO05D006696 1.8e-38 163.3 187 40.1
DCAR_026757 Daucus carota HOM05D005619 ORTHO05D006696 1.8e-38 163.3 185 43.2
Lj3A878T24 Lonicera japonica HOM05D005619 ORTHO05D006696 1.8e-38 163.3 185 42.7
Gohir.A06G163800 Gossypium hirsutum HOM05D005619 ORTHO05D006696 2.4e-38 162.9 185 42.2
Gohir.D06G169500 Gossypium hirsutum HOM05D005619 ORTHO05D006696 2.4e-38 162.9 185 42.2
Gorai.010G198200 Gossypium raimondii HOM05D005619 ORTHO05D006696 2.4e-38 162.9 185 42.2
BraA04t18498Z Brassica rapa HOM05D005619 ORTHO05D006696 3.1e-38 162.5 187 42.8
Lj6g0025019 Lotus japonicus HOM05D005619 ORTHO05D006696 3.1e-38 162.5 187 39.6
AL5G36640 Arabidopsis lyrata HOM05D005619 ORTHO05D006696 4.1e-38 162.2 185 43.8
Cc03_g10740 Coffea canephora HOM05D005619 ORTHO05D006696 4.1e-38 162.2 187 43.3
A04p30090 Brassica napus HOM05D005619 ORTHO05D006696 5.4e-38 161.8 184 42.9
TPR.G16245 Trifolium pratense HOM05D005619 ORTHO05D006696 5.4e-38 161.8 193 40.9
AT1G19080 Arabidopsis thaliana HOM05D005619 ORTHO05D006696 7.0e-38 161.4 185 43.2
AT3G55490 Arabidopsis thaliana HOM05D005619 ORTHO05D006696 7.0e-38 161.4 185 43.2
arahy.Tifrunner.gnm1.ann1.IDH5I9 Arachis hypogaea HOM05D005619 ORTHO05D006696 7.0e-38 161.4 187 40.6
CSS0006168 Camellia sinensis var. sinensis HOM05D005619 ORTHO05D006696 7.0e-38 161.4 185 41.6
CANSAT56G2799 Cannabis sativa HOM05D005619 ORTHO05D006696 7.0e-38 161.4 185 41.6
TAR633G2706 Trochodendron aralioides HOM05D005619 ORTHO05D006696 7.0e-38 161.4 149 49.0
arahy.Tifrunner.gnm1.ann1.2YL4XG Arachis hypogaea HOM05D005619 ORTHO05D006696 9.1e-38 161.0 187 40.6
Prupe.2G202300 Prunus persica HOM05D005619 ORTHO05D006696 9.1e-38 161.0 185 40.5
BcaNung05464 Brassica carinata HOM05D005619 ORTHO05D006696 1.2e-37 160.6 187 41.7
COL.COLO4_38547 Corchorus olitorius HOM05D005598 ORTHO05D006587 1.2e-37 160.6 185 40.5
Duzib114G0170 Durio zibethinus HOM05D005619 ORTHO05D006696 1.2e-37 160.6 185 41.1
Manes.04G157300 Manihot esculenta HOM05D005619 ORTHO05D006696 1.2e-37 160.6 187 42.8
Potri.008G068100 Populus trichocarpa HOM05D005619 ORTHO05D006696 1.2e-37 160.6 185 42.2
SalBow8G4625 Salvia bowleyana HOM05D005619 ORTHO05D006696 1.6e-37 160.2 189 40.7
Thecc.10G016900 Theobroma cacao HOM05D005619 ORTHO05D006696 1.6e-37 160.2 185 40.0
AagrBONN_evm.TU.Sc2ySwM_344.729 Anthoceros agrestis HOM05D005619 ORTHO05D006696 2.0e-37 159.8 185 42.7
Duzib128G1619 Durio zibethinus HOM05D005619 ORTHO05D006696 2.0e-37 159.8 185 41.1
Prupe.2G249700 Prunus persica HOM05D005619 ORTHO05D006696 2.0e-37 159.8 185 40.0
Actinidia31994 Actinidia chinensis HOM05D005619 ORTHO05D006696 2.7e-37 159.5 185 41.1
CsaV3_6G001830 Cucumis sativus L. HOM05D005619 ORTHO05D006696 3.5e-37 159.1 187 40.6
Lj1g0018800 Lotus japonicus HOM05D005619 ORTHO05D006696 4.5e-37 158.7 187 39.0
Lalb_Chr03g0027081 Lupinus albus HOM05D005619 ORTHO05D006696 4.5e-37 158.7 187 39.6
QL08p063145 Quercus lobata HOM05D005619 ORTHO05D006696 4.5e-37 158.7 187 40.6
unitig_52.g17125 Utricularia gibba HOM05D005619 ORTHO05D006696 4.5e-37 158.7 187 40.6
MD01G1152600 Malus domestica HOM05D005619 ORTHO05D006696 7.7e-37 157.9 187 38.5
Psat5g128520 Pisum sativum HOM05D005619 ORTHO05D006696 7.7e-37 157.9 185 41.1
Sabra08G0050000 Salix brachista HOM05D005619 ORTHO05D006696 1.0e-36 157.5 185 41.1
SGA_v2.0_scaffold170G38815 Striga asiatica HOM05D005619 ORTHO05D006696 1.0e-36 157.5 189 41.8
BolC4t28280H Brassica oleracea HOM05D005619 ORTHO05D006696 1.3e-36 157.1 184 42.4
ECA233G2873 Erigeron canadensis HOM05D005619 ORTHO05D006696 1.3e-36 157.1 185 40.0
Hma1.2p1_2256F.1_g318210 Hydrangea macrophylla HOM05D005619 ORTHO05D006696 1.3e-36 157.1 185 42.2
VMungo1383G0062 Vigna mungo HOM05D005619 ORTHO05D006696 1.3e-36 157.1 184 39.7
Phvul.001G242800 Phaseolus vulgaris HOM05D005619 ORTHO05D006696 1.7e-36 156.8 187 39.0
Sp4g22380 Schrenkiella parvula HOM05D005619 ORTHO05D006696 1.7e-36 156.8 187 41.2
Potri.010G189200 Populus trichocarpa HOM05D005619 ORTHO05D006696 2.9e-36 156.0 185 41.1
HanXRQChr09g0271791 Helianthus annuus HOM05D005619 ORTHO05D006696 3.8e-36 155.6 185 40.0
BcaC02g07350 Brassica carinata HOM05D005619 ORTHO05D006696 1.5e-35 153.7 184 41.8
C04p67770 Brassica napus HOM05D005619 ORTHO05D006696 1.5e-35 153.7 184 41.8
ECA247G2146 Erigeron canadensis HOM05D005619 ORTHO05D006696 1.9e-35 153.3 185 40.0
HanXRQChr15g0468911 Helianthus annuus HOM05D005619 ORTHO05D006696 2.5e-35 152.9 185 40.0
Lsat_1_v5_gn_8_41961 Lactuca sativa HOM05D005619 ORTHO05D006696 4.2e-35 152.1 185 40.0
Cfa001322 Carpinus fangiana HOM05D005619 ORTHO05D006696 5.5e-35 151.8 185 40.0
ClCG11G006160 Citrullus lanatus HOM05D005619 ORTHO05D006696 7.2e-35 151.4 185 40.0
Haze_17223 Corylus avellana HOM05D005619 ORTHO05D006696 7.2e-35 151.4 185 39.5
DCAR_023625 Daucus carota HOM05D005619 ORTHO05D006696 1.2e-34 150.6 150 45.3
Glyma.18G027600 Glycine max HOM05D005619 ORTHO05D006696 1.2e-34 150.6 185 38.9
HanXRQChr08g0213181 Helianthus annuus HOM05D005619 ORTHO05D006696 1.2e-34 150.6 185 39.5
Glyma.11G229600 Glycine max HOM05D005619 ORTHO05D006696 2.1e-34 149.8 185 38.9
Solyc05g008620.4 Solanum lycopersicum HOM05D005619 ORTHO05D006696 2.8e-34 149.4 187 39.0
Sopen05g004460 Solanum pennellii HOM05D005619 ORTHO05D006696 2.8e-34 149.4 187 39.0
Ciclev10033435m.g Citrus clementina HOM05D005619 ORTHO05D006696 3.6e-34 149.1 169 40.2
Peaxi162Scf00451g00930 Petunia axillaris HOM05D005619 ORTHO05D006696 3.6e-34 149.1 187 39.0
PGSC0003DMG400030566 Solanum tuberosum HOM05D005619 ORTHO05D006696 4.7e-34 148.7 187 38.5
CiPaw.08G091200 Carya illinoinensis HOM05D005619 ORTHO05D006696 6.1e-34 148.3 187 38.0
CAN.G1489.22 Capsicum annuum HOM05D005619 ORTHO05D006696 8.0e-34 147.9 187 39.0
CiPaw.02G192300 Carya illinoinensis HOM05D000781 ORTHO05D000643 5.2e-33 145.2 181 37.6
Lalb_Chr01g0004131 Lupinus albus HOM05D005619 ORTHO05D006696 5.2e-33 145.2 210 36.7
MCO08G248 Micromonas commoda HOM05D005619 ORTHO05D006696 5.2e-33 145.2 188 39.9
Cre06.g251750 Chlamydomonas reinhardtii HOM05D005619 ORTHO05D006696 1.5e-32 143.7 189 34.9
Cc03_g13530 Coffea canephora HOM05D005619 ORTHO05D006696 2.6e-32 142.9 167 41.3
FAN06G3728 Fragaria x ananassa HOM05D005619 ORTHO05D006696 4.4e-32 142.1 151 43.7
BcaC02g07392 Brassica carinata HOM05D005619 ORTHO05D006696 9.8e-32 141.0 170 41.2
COL.COLO4_25718 Corchorus olitorius HOM05D005619 ORTHO05D006696 1.1e-30 137.5 185 35.7
TWI53G0619 Tripterygium wilfordii HOM05D005619 ORTHO05D006696 5.4e-30 135.2 168 38.1
CSS0006460 Camellia sinensis var. sinensis HOM05D005619 ORTHO05D006696 7.0e-30 134.8 167 40.7
SalBow8G2997 Salvia bowleyana HOM05D005619 ORTHO05D006696 1.2e-26 124.0 203 34.5
Nitab4.5_0000350g0020 Nicotiana tabacum HOM05D005619 ORTHO05D006696 1.0e-25 120.9 187 35.3
Peaxi162Scf00205g01136 Petunia axillaris HOM05D005619 ORTHO05D006696 1.2e-24 117.5 147 36.7
C04p07340 Brassica napus HOM05D004515 ORTHO05D006013 7.5e-24 114.8 166 35.5
TWI73G0774 Tripterygium wilfordii HOM05D005619 ORTHO05D006696 9.8e-24 114.4 187 32.6
AagrBONN_evm.TU.Sc2ySwM_344.737 Anthoceros agrestis HOM05D005619 ORTHO05D006696 1.7e-23 113.6 102 52.0
CARHR159370 Cardamine hirsuta HOM05D005619 ORTHO05D006696 2.9e-23 112.8 106 45.3
Aa31LG5G19540 Aethionema arabicum HOM05D005619 ORTHO05D006696 6.4e-23 111.7 102 49.0
FAN06G2505 Fragaria x ananassa HOM05D005619 ORTHO05D006696 8.3e-23 111.3 151 39.7
Nitab4.5_0003886g0110 Nicotiana tabacum HOM05D005619 ORTHO05D006696 1.6e-21 107.1 185 32.4
MELO3C029903.2 Cucumis melo HOM05D005619 ORTHO05D006696 3.9e-20 102.4 198 32.3
Sabra10G0145900 Salix brachista HOM05D005619 ORTHO05D006696 1.1e-19 100.9 185 34.6
ATR0568G146 Amborella trichopoda HOM05D005619 ORTHO05D006696 6.2e-18 95.1 118 43.2
Cfa027228 Carpinus fangiana HOM05D005619 ORTHO05D006696 6.8e-17 91.7 176 30.7
BolC4t22357H Brassica oleracea HOM05D004515 ORTHO05D006013 1.7e-15 87.0 71 47.9
PRCOL_00002083 Prasinoderma coloniale HOM05D005619 ORTHO05D006696 2.1e-13 80.1 175 30.3
Actinidia33632 Actinidia chinensis HOM05D005619 ORTHO05D006696 2.3e-12 76.6 100 39.0
BcaB08g35316 Brassica carinata HOM05D005619 ORTHO05D006696 1.2e-10 70.9 72 44.4
C04p07380 Brassica napus HOM05D005619 ORTHO05D006696 2.0e-08 63.5 115 34.8
HanXRQChr01g0017101 Helianthus annuus HOM05D005619 ORTHO05D006696 7.6e-08 61.6 58 44.8
HanXRQChr12g0375531 Helianthus annuus HOM05D005619 ORTHO05D006696 4.9e-07 58.9 74 39.2


User provided reference genes

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