Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g38118 Chara braunii HOM05D003570 ORTHO05D004207 0.0e+00 1211.1 743 100.0
Pp3c9_21420 Physcomitrium patens HOM05D003570 ORTHO05D004207 7.5e-96 355.9 699 40.2
Mapoly0004s0250 Marchantia polymorpha HOM05D003570 ORTHO05D004207 1.8e-89 334.7 718 39.8
SEGI_05718 Sequoiadendron giganteum HOM05D003570 ORTHO05D004207 9.5e-83 312.4 720 39.0
SMO367G0645 Selaginella moellendorffii HOM05D003570 ORTHO05D004207 2.7e-69 267.7 727 32.6
Ca_25131_v3 Cicer arietinum L. HOM05D001269 ORTHO05D001083 1.8e-57 228.4 715 33.8
RcHm_v2.0_Chr4g0432651 Rosa chinensis HOM05D003570 ORTHO05D004207 1.3e-55 222.2 709 31.3
MBI04_g13681_MAGBIO Magnolia biondii HOM05D003570 ORTHO05D004207 3.7e-55 220.7 708 33.5
Sc04g0009680 Simmondsia chinensis HOM05D003570 ORTHO05D004207 3.7e-55 220.7 717 31.8
TWI36G1196 Tripterygium wilfordii HOM05D003570 ORTHO05D004207 3.7e-55 220.7 709 32.2
Phvul.001G256000 Phaseolus vulgaris HOM05D003570 ORTHO05D004207 1.9e-54 218.4 687 33.0
Sed0006332 Sechium edule HOM05D003570 ORTHO05D004207 1.9e-54 218.4 556 35.6
arahy.Tifrunner.gnm1.ann1.8897EQ Arachis hypogaea HOM05D003570 ORTHO05D004207 3.2e-54 217.6 747 31.9
COL.COLO4_23499 Corchorus olitorius HOM05D003570 ORTHO05D004207 3.2e-54 217.6 747 30.0
CiPaw.06G064800 Carya illinoinensis HOM05D003570 ORTHO05D004207 4.1e-54 217.2 291 41.6
Eucgr.B03244 Eucalyptus grandis HOM05D003570 ORTHO05D004207 5.4e-54 216.9 721 31.1
PSO063G1535 Papaver somniferum HOM05D003570 ORTHO05D004207 5.4e-54 216.9 290 42.1
Manes.13G020900 Manihot esculenta HOM05D003570 ORTHO05D004207 9.2e-54 216.1 623 34.2
Potri.008G183500 Populus trichocarpa HOM05D003570 ORTHO05D004207 1.2e-53 215.7 718 32.9
Sabra08G0139700 Salix brachista HOM05D003570 ORTHO05D004207 1.2e-53 215.7 300 41.0
arahy.Tifrunner.gnm1.ann1.I1BHDP Arachis hypogaea HOM05D003570 ORTHO05D004207 1.6e-53 215.3 726 31.8
Nn4g22548 Nelumbo nucifera HOM05D003570 ORTHO05D004207 1.6e-53 215.3 708 31.6
ATR0824G009 Amborella trichopoda HOM05D003570 ORTHO05D004207 2.7e-53 214.5 705 32.9
CANSAT11G1164 Cannabis sativa HOM05D003570 ORTHO05D004207 2.7e-53 214.5 709 30.0
Haze_12279 Corylus avellana HOM05D003570 ORTHO05D004207 2.7e-53 214.5 707 34.5
Psat5g092360 Pisum sativum HOM05D003570 ORTHO05D004207 2.7e-53 214.5 696 32.0
Gohir.D04G180400 Gossypium hirsutum HOM05D003570 ORTHO05D004207 4.6e-53 213.8 691 33.9
Duzib248G0757 Durio zibethinus HOM05D003570 ORTHO05D004207 7.8e-53 213.0 702 31.6
FAN07G1326 Fragaria x ananassa HOM05D003570 ORTHO05D004207 7.8e-53 213.0 720 30.0
Lj3A151T25 Lonicera japonica HOM05D003570 ORTHO05D004207 1.0e-52 212.6 350 36.9
Thecc.02G265200 Theobroma cacao HOM05D003570 ORTHO05D004207 1.0e-52 212.6 702 34.2
TAR622G0746 Trochodendron aralioides HOM05D003570 ORTHO05D004207 5.1e-52 210.3 557 36.6
FAN12G2286 Fragaria x ananassa HOM05D003570 ORTHO05D004207 6.6e-52 209.9 704 29.5
CsaV3_5G030790 Cucumis sativus L. HOM05D003570 ORTHO05D004207 1.1e-51 209.1 707 31.1
Gorai.012G173500 Gossypium raimondii HOM05D003570 ORTHO05D004207 1.1e-51 209.1 686 34.3
PSO063G4933 Papaver somniferum HOM05D003570 ORTHO05D004207 1.1e-51 209.1 685 33.3
FAN22G0389 Fragaria x ananassa HOM05D003570 ORTHO05D004207 1.5e-51 208.8 706 30.3
VMungo1383G2895 Vigna mungo HOM05D003570 ORTHO05D004207 1.5e-51 208.8 684 32.2
Ciclev10030923m.g Citrus clementina HOM05D003570 ORTHO05D004207 2.5e-51 208.0 714 31.4
FvH4_4g25360 Fragaria vesca HOM05D003570 ORTHO05D004207 4.3e-51 207.2 704 29.4
FAN17G0862 Fragaria x ananassa HOM05D003570 ORTHO05D004207 4.3e-51 207.2 714 28.7
Lj6A815G40 Lonicera japonica HOM05D003570 ORTHO05D004207 4.3e-51 207.2 507 32.7
PSO754G0035 Papaver somniferum HOM05D003570 ORTHO05D004207 5.6e-51 206.8 289 40.8
PSO339G2835 Papaver somniferum HOM05D003570 ORTHO05D004207 1.2e-50 205.7 685 33.6
MD13G1104500 Malus domestica HOM05D003570 ORTHO05D004207 1.6e-50 205.3 598 33.8
MCO05G059 Micromonas commoda HOM05D003570 ORTHO05D004207 2.1e-50 204.9 316 38.0
Medtr3g086460 Medicago truncatula HOM05D003570 ORTHO05D004207 2.8e-50 204.5 702 31.5
Glyma.11G244100 Glycine max HOM05D003570 ORTHO05D004207 3.6e-50 204.1 688 32.0
GSVIVG01000572001 Vitis vinifera HOM05D003570 ORTHO05D004207 4.7e-50 203.8 698 31.8
Gohir.A04G137200 Gossypium hirsutum HOM05D003570 ORTHO05D004207 6.2e-50 203.4 690 33.9
EL10As2g23162 Beta vulgaris HOM05D003570 ORTHO05D004207 1.4e-49 202.2 531 36.7
Lalb_Chr08g0230861 Lupinus albus HOM05D003570 ORTHO05D004207 8.9e-49 199.5 539 34.1
AUR62005511 Chenopodium quinoa HOM05D003570 ORTHO05D004207 1.2e-48 199.1 520 35.0
Lj4g0018208 Lotus japonicus HOM05D003570 ORTHO05D004207 1.2e-48 199.1 706 35.4
ClCG05G026050 Citrullus lanatus HOM05D003570 ORTHO05D004207 2.0e-48 198.4 703 31.6
DCAR_026498 Daucus carota HOM05D003570 ORTHO05D004207 2.0e-48 198.4 545 34.3
Nitab4.5_0002373g0110 Nicotiana tabacum HOM05D003570 ORTHO05D004207 2.0e-48 198.4 702 29.5
AUR62024231 Chenopodium quinoa HOM05D003570 ORTHO05D004207 2.6e-48 198.0 539 34.9
MELO3C011924.2 Cucumis melo HOM05D003570 ORTHO05D004207 3.4e-48 197.6 707 31.8
PGR102G1250 Punica granatum HOM05D003570 ORTHO05D004207 7.6e-48 196.4 709 29.3
PGSC0003DMG400016968 Solanum tuberosum HOM05D003570 ORTHO05D004207 7.6e-48 196.4 245 40.8
Aqoxy7G03799 Aquilegia oxysepala HOM05D003570 ORTHO05D004207 1.3e-47 195.7 504 37.1
Oeu038645.2 Olea europaea HOM05D003570 ORTHO05D004207 3.8e-47 194.1 297 39.7
Prupe.1G241900 Prunus persica HOM05D003570 ORTHO05D004207 3.8e-47 194.1 692 32.8
CAN.G1572.8 Capsicum annuum HOM05D003570 ORTHO05D004207 1.4e-46 192.2 707 33.7
Peaxi162Scf00128g00550 Petunia axillaris HOM05D003570 ORTHO05D004207 1.4e-46 192.2 685 31.8
Rhsim12G0108000 Rhododendron simsii HOM05D003570 ORTHO05D004207 1.4e-46 192.2 262 41.2
Actinidia37450 Actinidia chinensis HOM05D003570 ORTHO05D004207 2.4e-46 191.4 544 35.8
HanXRQChr08g0208421 Helianthus annuus HOM05D003570 ORTHO05D004207 2.4e-46 191.4 685 32.4
QL03p056574 Quercus lobata HOM05D003570 ORTHO05D004207 3.2e-46 191.0 685 34.3
THA.LOC104805269 Tarenaya hassleriana HOM05D003570 ORTHO05D004207 3.2e-46 191.0 710 31.7
Cpa.g.sc13.88 Carica papaya HOM05D003570 ORTHO05D004207 7.1e-46 189.9 720 28.3
COL.COLO4_27904 Corchorus olitorius HOM05D003570 ORTHO05D004207 7.1e-46 189.9 296 40.5
vmacro16171 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 7.1e-46 189.9 236 43.2
Hma1.2p1_1533F.1_g289360 Hydrangea macrophylla HOM05D003570 ORTHO05D004207 9.2e-46 189.5 262 39.7
Lj6g0027950 Lotus japonicus HOM05D003570 ORTHO05D004207 1.2e-45 189.1 695 33.5
Migut.K00625 Erythranthe guttata HOM05D003570 ORTHO05D004207 2.1e-45 188.3 721 32.2
Lsat_1_v5_gn_0_32260 Lactuca sativa HOM05D003570 ORTHO05D004207 4.6e-45 187.2 532 36.7
Sopen05g008710 Solanum pennellii HOM05D003570 ORTHO05D004207 7.8e-45 186.4 702 31.6
Aqoxy5G03688 Aquilegia oxysepala HOM05D003570 ORTHO05D004207 2.3e-44 184.9 221 40.7
SGA_v2.0_scaffold22G09799 Striga asiatica HOM05D003570 ORTHO05D004207 1.5e-43 182.2 717 31.5
AagrBONN_evm.TU.Sc2ySwM_362.2178 Anthoceros agrestis HOM05D003570 ORTHO05D004207 7.3e-43 179.9 170 50.6
ECA233G5166 Erigeron canadensis HOM05D002671 ORTHO05D002985 7.3e-43 179.9 532 32.0
TPR.G35967 Trifolium pratense HOM05D003570 ORTHO05D004207 3.6e-42 177.6 694 28.4
Dinv15203 Davidia involucrata HOM05D003570 ORTHO05D004207 1.1e-41 176.0 206 46.1
MSTRG.553 Avicennia marina HOM05D003570 ORTHO05D004207 1.8e-41 175.3 709 32.9
Nitab4.5_0001978g0070 Nicotiana tabacum HOM05D003570 ORTHO05D004207 6.9e-41 173.3 523 32.5
Aqoxy1G03220 Aquilegia oxysepala HOM05D003570 ORTHO05D004207 1.2e-40 172.6 264 39.4
CDE06G1553 Ceratophyllum demersum HOM05D003570 ORTHO05D004207 2.0e-40 171.8 173 47.4
Oeu038646.1 Olea europaea HOM05D003570 ORTHO05D004207 2.6e-40 171.4 281 38.4
PSO063G3251 Papaver somniferum HOM05D003570 ORTHO05D004207 3.4e-40 171.0 276 39.1
QL03p056953 Quercus lobata HOM05D003570 ORTHO05D004207 2.2e-39 168.3 556 34.5
Cc11_g16040 Coffea canephora HOM05D003570 ORTHO05D004207 6.4e-39 166.8 698 30.9
Zm00001eb062020 Zea mays HOM05D003570 ORTHO05D004207 6.4e-39 166.8 607 32.3
Os02g0596100 Oryza sativa ssp. japonica HOM05D003570 ORTHO05D004207 1.4e-38 165.6 691 32.7
vmacro16173 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 1.4e-38 165.6 227 40.5
Cre06.g300900 Chlamydomonas reinhardtii HOM05D003570 ORTHO05D004207 1.2e-37 162.5 308 35.7
PRCOL_00001147 Prasinoderma coloniale HOM05D003570 ORTHO05D004207 6.0e-37 160.2 304 34.9
Zm00001eb212370 Zea mays HOM05D003570 ORTHO05D004207 7.8e-37 159.8 575 33.7
Thhalv10007079m.g Eutrema salsugineum HOM05D003570 ORTHO05D004207 1.3e-36 159.1 310 36.1
Aa31LG1G1680 Aethionema arabicum HOM05D003570 ORTHO05D004207 1.7e-36 158.7 300 36.3
Nitab4.5_0004117g0010 Nicotiana tabacum HOM05D003570 ORTHO05D004207 6.6e-36 156.8 714 26.6
Atru.chr11.2174 Acer truncatum HOM05D003570 ORTHO05D004207 1.5e-35 155.6 700 30.4
unitig_22.g6426 Utricularia gibba HOM05D003570 ORTHO05D004207 1.5e-35 155.6 138 52.2
SHI04269 Sapria himalayana HOM05D003570 ORTHO05D004207 2.5e-35 154.8 567 28.4
AL1G24790 Arabidopsis lyrata HOM05D003570 ORTHO05D004207 3.3e-35 154.5 552 32.1
AT1G13120 Arabidopsis thaliana HOM05D003570 ORTHO05D004207 2.1e-34 151.8 550 33.3
A09p63350 Brassica napus HOM05D003570 ORTHO05D004207 2.8e-34 151.4 307 32.6
BraA09t41684Z Brassica rapa HOM05D003570 ORTHO05D004207 1.5e-32 145.6 563 31.8
AagrBONN_evm.TU.Sc2ySwM_344.4464 Anthoceros agrestis HOM05D003570 ORTHO05D004207 3.4e-32 144.4 544 31.8
C08p46780 Brassica napus HOM05D003570 ORTHO05D004207 4.5e-32 144.1 563 35.7
CSS0045431 Camellia sinensis var. sinensis HOM05D003570 ORTHO05D004207 1.7e-31 142.1 149 51.0
BolC8t52217H Brassica oleracea HOM05D003570 ORTHO05D004207 3.8e-31 141.0 714 31.1
vmacro17618 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 4.9e-31 140.6 569 29.5
Haze_11814 Corylus avellana HOM05D001314 ORTHO05D001165 6.4e-31 140.2 176 41.5
Haze_20779 Corylus avellana HOM05D003570 ORTHO05D004207 1.1e-30 139.4 115 57.4
BcaC07g41664 Brassica carinata HOM05D003570 ORTHO05D004207 2.4e-30 138.3 723 31.8
Carub.0001s1286 Capsella rubella HOM05D003570 ORTHO05D004207 7.1e-30 136.7 553 25.5
CARHR013490 Cardamine hirsuta HOM05D003570 ORTHO05D004207 2.1e-29 135.2 549 32.1
Sopen04g013730 Solanum pennellii HOM05D003570 ORTHO05D004207 1.3e-28 132.5 113 54.9
Sp1g11650 Schrenkiella parvula HOM05D003570 ORTHO05D004207 1.1e-27 129.4 561 30.5
Thhalv10001133m.g Eutrema salsugineum HOM05D003570 ORTHO05D004207 2.4e-25 121.7 293 31.4
EL10Ac8g19584 Beta vulgaris HOM05D003570 ORTHO05D004207 1.2e-24 119.4 116 48.3
AL6G47680 Arabidopsis lyrata HOM05D003570 ORTHO05D004207 1.1e-22 112.8 251 32.7
AL2G22720 Arabidopsis lyrata HOM05D003570 ORTHO05D004207 7.9e-21 106.7 139 42.4
Hma1.2p1_0054F.1_g030990 Hydrangea macrophylla HOM05D003570 ORTHO05D004207 4.3e-19 100.9 88 53.4
CiPaw.02G032100 Carya illinoinensis HOM05D003570 ORTHO05D004207 1.4e-14 85.9 291 25.8
Medtr7g034350 Medicago truncatula HOM05D003570 ORTHO05D004207 2.5e-14 85.1 182 28.0
BolC5t29767H Brassica oleracea HOM05D003570 ORTHO05D004207 2.3e-12 78.6 166 28.3
FAN08G0154 Fragaria x ananassa HOM05D003570 ORTHO05D004207 8.7e-12 76.6 149 34.2
FAN08G3485 Fragaria x ananassa HOM05D003570 ORTHO05D004207 1.5e-11 75.9 112 38.4
TAR374G0522 Trochodendron aralioides HOM05D003570 ORTHO05D004207 1.5e-11 75.9 95 40.0
BcaC05g25084 Brassica carinata HOM05D003570 ORTHO05D004207 5.7e-11 73.9 161 28.0
FvH4_5g15750 Fragaria vesca HOM05D003570 ORTHO05D004207 8.2e-10 70.1 61 54.1
Sp2g10400 Schrenkiella parvula HOM05D003570 ORTHO05D004207 8.2e-10 70.1 109 36.7
C05p10220 Brassica napus HOM05D003570 ORTHO05D004207 4.5e-08 64.3 112 30.4
MD05G1151500 Malus domestica HOM05D003570 ORTHO05D004207 1.0e-07 63.2 51 58.8
Glyma.18G013000 Glycine max HOM05D003570 ORTHO05D004207 2.9e-07 61.6 82 39.0
EL10Ac1g01653 Beta vulgaris HOM05D003570 ORTHO05D004207 4.2e-06 57.8 52 50.0


User provided reference genes

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