Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g38093 Chara braunii HOM05D006150 ORTHO05D007745 2.4e-36 154.8 70 100.0
Nn6g33757 Nelumbo nucifera HOM05D006150 ORTHO05D007745 1.9e-30 135.2 66 87.9
CAN.G572.11 Capsicum annuum HOM05D006150 ORTHO05D007745 2.5e-30 134.8 66 86.4
SEGI_33649 Sequoiadendron giganteum HOM05D006150 ORTHO05D007745 3.3e-30 134.4 66 86.4
HPP92_025744 Vanilla planifolia HOM05D006150 ORTHO05D007745 3.3e-30 134.4 67 85.1
Gohir.D12G215200 Gossypium hirsutum HOM05D006150 ORTHO05D007745 4.3e-30 134.0 66 86.4
Os07g0495000 Oryza sativa ssp. japonica HOM05D006150 ORTHO05D007745 4.3e-30 134.0 67 83.6
QL12p008732 Quercus lobata HOM05D006150 ORTHO05D007745 4.3e-30 134.0 66 84.8
PGSC0003DMG400026243 Solanum tuberosum HOM05D006150 ORTHO05D007745 4.3e-30 134.0 66 84.8
Zm00001eb322060 Zea mays HOM05D006150 ORTHO05D007745 4.3e-30 134.0 67 85.1
EL10Ac5g12270 Beta vulgaris HOM05D006150 ORTHO05D007745 5.7e-30 133.7 66 86.4
CSS0019555 Camellia sinensis var. sinensis HOM05D006150 ORTHO05D007745 5.7e-30 133.7 66 86.4
CSS0048254 Camellia sinensis var. sinensis HOM05D006150 ORTHO05D007745 5.7e-30 133.7 66 86.4
CARHR223610 Cardamine hirsuta HOM05D006150 ORTHO05D007745 5.7e-30 133.7 66 86.4
DCAR_008330 Daucus carota HOM05D006150 ORTHO05D007745 5.7e-30 133.7 66 86.4
Duzib084G0008 Durio zibethinus HOM05D006150 ORTHO05D007745 5.7e-30 133.7 66 86.4
Lj8A277T42 Lonicera japonica HOM05D006150 ORTHO05D007745 5.7e-30 133.7 66 84.8
Thecc.03G240100 Theobroma cacao HOM05D006150 ORTHO05D007745 5.7e-30 133.7 66 86.4
Aqoxy5G02622 Aquilegia oxysepala HOM05D006150 ORTHO05D007745 7.4e-30 133.3 67 85.1
Hma1.2p1_0570F.1_g180430 Hydrangea macrophylla HOM05D006150 ORTHO05D007745 7.4e-30 133.3 66 84.8
Pp3c9_12580 Physcomitrium patens HOM05D006150 ORTHO05D007745 7.4e-30 133.3 68 82.4
Sopen08g026350 Solanum pennellii HOM05D006150 ORTHO05D007745 7.4e-30 133.3 66 84.8
TAR636G1440 Trochodendron aralioides HOM05D006150 ORTHO05D007745 7.4e-30 133.3 66 84.8
GSVIVG01003685001 Vitis vinifera HOM05D006150 ORTHO05D007745 7.4e-30 133.3 66 84.8
Ciclev10021365m.g Citrus clementina HOM05D006150 ORTHO05D007745 9.7e-30 132.9 66 84.8
Cc08_g11330 Coffea canephora HOM05D006150 ORTHO05D007745 9.7e-30 132.9 66 84.8
Nitab4.5_0000500g0240 Nicotiana tabacum HOM05D006150 ORTHO05D007745 9.7e-30 132.9 66 84.8
Nitab4.5_0009451g0030 Nicotiana tabacum HOM05D006150 ORTHO05D007745 9.7e-30 132.9 66 84.8
Peaxi162Scf00301g00519 Petunia axillaris HOM05D006150 ORTHO05D007745 9.7e-30 132.9 66 83.3
THA.LOC104807929 Tarenaya hassleriana HOM05D006150 ORTHO05D007745 9.7e-30 132.9 67 83.6
Ah.12g053980 Amaranthus hybridus HOM05D006150 ORTHO05D007745 1.3e-29 132.5 66 84.8
CANSAT21G0710 Cannabis sativa HOM05D006150 ORTHO05D007745 1.3e-29 132.5 66 84.8
Dinv28876 Davidia involucrata HOM05D006150 ORTHO05D007745 1.3e-29 132.5 66 84.8
Mapoly0072s0097 Marchantia polymorpha HOM05D006150 ORTHO05D007745 1.3e-29 132.5 68 79.4
PSO675G6476 Papaver somniferum HOM05D006150 ORTHO05D007745 1.3e-29 132.5 66 84.8
Potri.003G083600 Populus trichocarpa HOM05D006150 ORTHO05D007745 1.3e-29 132.5 66 84.8
Rhsim07G0136400 Rhododendron simsii HOM05D006150 ORTHO05D007745 1.3e-29 132.5 66 84.8
Solyc08g077840.3 Solanum lycopersicum HOM05D006150 ORTHO05D007745 1.3e-29 132.5 66 83.3
AL7G37660 Arabidopsis lyrata HOM05D006150 ORTHO05D007745 1.7e-29 132.1 66 84.8
AT4G17050 Arabidopsis thaliana HOM05D006150 ORTHO05D007745 1.7e-29 132.1 66 84.8
Carub.0007s2437 Capsella rubella HOM05D006150 ORTHO05D007745 1.7e-29 132.1 66 84.8
CsaV3_3G004750 Cucumis sativus L. HOM05D006150 ORTHO05D007745 1.7e-29 132.1 68 82.4
Thhalv10026866m.g Eutrema salsugineum HOM05D006150 ORTHO05D007745 1.7e-29 132.1 66 84.8
FvH4_5g20400 Fragaria vesca HOM05D006150 ORTHO05D007745 1.7e-29 132.1 66 84.8
Gohir.A12G212700 Gossypium hirsutum HOM05D006150 ORTHO05D007745 1.7e-29 132.1 66 84.8
Gorai.008G230800 Gossypium raimondii HOM05D006150 ORTHO05D007745 1.7e-29 132.1 66 84.8
MBI04_g13858_MAGBIO Magnolia biondii HOM05D006150 ORTHO05D007745 1.7e-29 132.1 66 84.8
Prupe.5G055300 Prunus persica HOM05D006150 ORTHO05D007745 1.7e-29 132.1 66 84.8
RcHm_v2.0_Chr7g0205681 Rosa chinensis HOM05D006150 ORTHO05D007745 1.7e-29 132.1 66 84.8
Sp7g17140 Schrenkiella parvula HOM05D006150 ORTHO05D007745 1.7e-29 132.1 66 84.8
Cfa012327 Carpinus fangiana HOM05D006150 ORTHO05D007745 2.2e-29 131.7 66 84.8
AUR62007167 Chenopodium quinoa HOM05D006150 ORTHO05D007745 2.2e-29 131.7 66 84.8
PGR031G0533 Punica granatum HOM05D006150 ORTHO05D007745 2.2e-29 131.7 66 84.8
TPR.G25747 Trifolium pratense HOM05D006150 ORTHO05D007745 2.2e-29 131.7 66 84.8
Atru.chr9.1206 Acer truncatum HOM05D006150 ORTHO05D007745 2.8e-29 131.3 66 83.3
BcaC09g50439 Brassica carinata HOM05D006150 ORTHO05D007745 2.8e-29 131.3 65 84.6
C01p25410 Brassica napus HOM05D006150 ORTHO05D007745 2.8e-29 131.3 65 84.6
PSO732G0290 Papaver somniferum HOM05D006150 ORTHO05D007745 2.8e-29 131.3 66 83.3
Sed0022790 Sechium edule HOM05D006150 ORTHO05D007745 2.8e-29 131.3 68 80.9
SGA_v2.0_scaffold181G39680 Striga asiatica HOM05D006150 ORTHO05D007745 2.8e-29 131.3 66 83.3
BcaNung04656 Brassica carinata HOM05D006150 ORTHO05D007745 3.7e-29 131.0 66 83.3
AUR62018839 Chenopodium quinoa HOM05D006150 ORTHO05D007745 3.7e-29 131.0 66 83.3
Eucgr.D02133 Eucalyptus grandis HOM05D006150 ORTHO05D007745 3.7e-29 131.0 66 83.3
Glyma.05G066500 Glycine max HOM05D006150 ORTHO05D007745 3.7e-29 131.0 66 83.3
Glyma.17G148400 Glycine max HOM05D006150 ORTHO05D007745 3.7e-29 131.0 66 83.3
Lj4g0002003 Lotus japonicus HOM05D006150 ORTHO05D007745 3.7e-29 131.0 66 84.8
MD04G1055500 Malus domestica HOM05D006150 ORTHO05D007745 3.7e-29 131.0 66 84.8
unitig_746.g26644 Utricularia gibba HOM05D006150 ORTHO05D007745 3.7e-29 131.0 66 83.3
BcaNung00130 Brassica carinata HOM05D006150 ORTHO05D007745 4.8e-29 130.6 66 83.3
ECA234G2169 Erigeron canadensis HOM05D006150 ORTHO05D007745 4.8e-29 130.6 66 83.3
FAN04G1813 Fragaria x ananassa HOM05D006150 ORTHO05D007745 4.8e-29 130.6 66 83.3
Lalb_Chr09g0329771 Lupinus albus HOM05D006150 ORTHO05D007745 4.8e-29 130.6 66 84.8
Medtr4g099290 Medicago truncatula HOM05D006150 ORTHO05D007745 4.8e-29 130.6 66 84.8
Oeu012348.1 Olea europaea HOM05D006150 ORTHO05D007745 4.8e-29 130.6 66 83.3
Phvul.003G225600 Phaseolus vulgaris HOM05D006150 ORTHO05D007745 4.8e-29 130.6 66 81.8
SalBow7G3619 Salvia bowleyana HOM05D006150 ORTHO05D007745 4.8e-29 130.6 67 80.6
vmacro00832 Vaccinium macrocarpon HOM05D006150 ORTHO05D007745 4.8e-29 130.6 66 83.3
VMungo0251G1767 Vigna mungo HOM05D006150 ORTHO05D007745 4.8e-29 130.6 66 81.8
arahy.Tifrunner.gnm1.ann1.IPM3U6 Arachis hypogaea HOM05D006150 ORTHO05D007745 6.3e-29 130.2 66 83.3
arahy.Tifrunner.gnm1.ann1.YY6LCE Arachis hypogaea HOM05D006150 ORTHO05D007745 6.3e-29 130.2 66 83.3
MSTRG.6640 Avicennia marina HOM05D006150 ORTHO05D007745 6.3e-29 130.2 66 81.8
A03p50280 Brassica napus HOM05D006150 ORTHO05D007745 6.3e-29 130.2 66 83.3
BolC1t02493H Brassica oleracea HOM05D006150 ORTHO05D007745 6.3e-29 130.2 66 81.8
BraA03t14117Z Brassica rapa HOM05D006150 ORTHO05D007745 6.3e-29 130.2 66 83.3
Haze_08363 Corylus avellana HOM05D006150 ORTHO05D007745 6.3e-29 130.2 66 83.3
HanXRQChr17g0534011 Helianthus annuus HOM05D006150 ORTHO05D007745 6.3e-29 130.2 66 84.8
Manes.01G089000 Manihot esculenta HOM05D006150 ORTHO05D007745 6.3e-29 130.2 66 83.3
PSO732G0039 Papaver somniferum HOM05D006150 ORTHO05D007745 6.3e-29 130.2 66 83.3
BraA01t01953Z Brassica rapa HOM05D006150 ORTHO05D007745 8.2e-29 129.8 66 81.8
TWI60G0542 Tripterygium wilfordii HOM05D006150 ORTHO05D007745 8.2e-29 129.8 66 81.8
COL.COLO4_07285 Corchorus olitorius HOM05D006150 ORTHO05D007745 1.1e-28 129.4 66 83.3
ClCG10G005070 Citrullus lanatus HOM05D006150 ORTHO05D007745 1.4e-28 129.0 68 80.9
Lsat_1_v5_gn_3_15361 Lactuca sativa HOM05D006150 ORTHO05D007745 1.4e-28 129.0 66 83.3
ATR0665G013 Amborella trichopoda HOM05D006150 ORTHO05D007745 1.8e-28 128.6 66 81.8
BcaC06g33538 Brassica carinata HOM05D006150 ORTHO05D007745 1.8e-28 128.6 66 81.8
C07p48390 Brassica napus HOM05D006150 ORTHO05D007745 1.8e-28 128.6 66 81.8
C07p48460 Brassica napus HOM05D006150 ORTHO05D007745 1.8e-28 128.6 66 81.8
C07p48520 Brassica napus HOM05D006150 ORTHO05D007745 1.8e-28 128.6 66 81.8
BolC7t45360H Brassica oleracea HOM05D006150 ORTHO05D007745 1.8e-28 128.6 66 81.8
CiPaw.11G072300 Carya illinoinensis HOM05D006150 ORTHO05D007745 1.8e-28 128.6 66 80.3
Cre06.g290000 Chlamydomonas reinhardtii HOM05D006150 ORTHO05D007745 4.1e-28 127.5 67 80.6
Ca_22017_v3 Cicer arietinum L. HOM05D006150 ORTHO05D007745 5.3e-28 127.1 66 81.8
Cpa.g.sc98.38 Carica papaya HOM05D006150 ORTHO05D007745 6.9e-28 126.7 64 82.8
CDE12G0966 Ceratophyllum demersum HOM05D006150 ORTHO05D007745 1.3e-26 122.5 61 83.6
FAN08G0760 Fragaria x ananassa HOM05D006150 ORTHO05D007745 1.1e-25 119.4 60 83.3
Aa31LG2G13130 Aethionema arabicum HOM05D006150 ORTHO05D007745 4.2e-25 117.5 90 61.1
MCO07G379 Micromonas commoda HOM05D006150 ORTHO05D007745 3.6e-24 114.4 66 68.2
A01p20260 Brassica napus HOM05D006150 ORTHO05D007745 2.2e-21 105.1 55 80.0
MCO04G282 Micromonas commoda HOM05D006150 ORTHO05D007745 3.7e-21 104.4 67 67.2
AagrBONN_evm.TU.Sc2ySwM_228.2274 Anthoceros agrestis HOM05D006150 ORTHO05D007745 6.3e-21 103.6 54 79.6
Actinidia25909 Actinidia chinensis HOM05D006150 ORTHO05D007745 3.1e-20 101.3 66 71.2
Psat4g076080 Pisum sativum HOM05D006150 ORTHO05D007745 5.5e-17 90.5 46 80.4
Sabra01G0120600 Salix brachista HOM05D006150 ORTHO05D007745 8.2e-13 76.6 66 60.6
MD06G1047100 Malus domestica HOM05D006150 ORTHO05D007745 2.0e-11 72.0 66 57.6
MELO3C014174.2 Cucumis melo HOM05D006150 ORTHO05D007745 1.0e-10 69.7 44 70.5
Actinidia02195 Actinidia chinensis HOM05D006150 ORTHO05D007745 1.0e-07 59.7 31 77.4


User provided reference genes

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