Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g38039 Chara braunii HOM05D005204 ORTHO05D006037 0.0e+00 1765.0 930 100.0
C05p49580 Brassica napus HOM05D005204 ORTHO05D006037 6.8e-46 190.3 747 28.9
BcaC05g28856 Brassica carinata HOM05D005204 ORTHO05D006037 1.5e-45 189.1 747 28.6
BolC5t33716H Brassica oleracea HOM05D005204 ORTHO05D006037 2.6e-45 188.3 747 28.8
BraA01t03817Z Brassica rapa HOM05D005204 ORTHO05D006037 4.4e-45 187.6 728 28.8
A01p37560 Brassica napus HOM05D005204 ORTHO05D006037 1.7e-44 185.7 728 28.7
BolC1t04731H Brassica oleracea HOM05D005204 ORTHO05D006037 1.7e-44 185.7 714 28.4
SEGI_08509 Sequoiadendron giganteum HOM05D005204 ORTHO05D006037 2.9e-44 184.9 741 29.8
SMO367G0335 Selaginella moellendorffii HOM05D005204 ORTHO05D006037 3.7e-44 184.5 750 28.3
A05p32870 Brassica napus HOM05D005204 ORTHO05D006037 4.9e-44 184.1 715 28.7
Oeu016254.2 Olea europaea HOM05D005204 ORTHO05D006037 6.3e-44 183.7 786 29.3
Mapoly0137s0008 Marchantia polymorpha HOM05D005204 ORTHO05D006037 8.3e-44 183.3 741 29.7
BraA05t22110Z Brassica rapa HOM05D005204 ORTHO05D006037 3.2e-43 181.4 715 28.8
Carub.0003s1646 Capsella rubella HOM05D005204 ORTHO05D006037 1.6e-42 179.1 758 27.0
Sp3g15000 Schrenkiella parvula HOM05D005204 ORTHO05D006037 2.7e-42 178.3 719 28.2
AL3G29660 Arabidopsis lyrata HOM05D005204 ORTHO05D006037 1.0e-41 176.4 722 27.6
Thhalv10020220m.g Eutrema salsugineum HOM05D005204 ORTHO05D006037 1.3e-41 176.0 726 28.4
Nn1g01973 Nelumbo nucifera HOM05D005204 ORTHO05D006037 3.9e-41 174.5 727 27.4
AT3G16730 Arabidopsis thaliana HOM05D005204 ORTHO05D006037 1.1e-40 172.9 745 27.8
ATR0693G386 Amborella trichopoda HOM05D005204 ORTHO05D006037 1.5e-40 172.6 752 28.7
MBI18_g25094_MAGBIO Magnolia biondii HOM05D005204 ORTHO05D006037 1.5e-40 172.6 709 29.1
C01p47610 Brassica napus HOM05D005204 ORTHO05D006037 2.5e-40 171.8 728 28.4
BcaB06g25769 Brassica carinata HOM05D005204 ORTHO05D006037 3.3e-40 171.4 737 27.5
Peaxi162Scf00646g00324 Petunia axillaris HOM05D005204 ORTHO05D006037 1.6e-39 169.1 700 28.3
THA.LOC104820287 Tarenaya hassleriana HOM05D005204 ORTHO05D006037 4.7e-39 167.5 735 26.4
TWI73G0558 Tripterygium wilfordii HOM05D005204 ORTHO05D006037 4.7e-39 167.5 764 27.9
Hma1.2p1_0078F.1_g040360 Hydrangea macrophylla HOM05D005204 ORTHO05D006037 2.3e-38 165.2 724 27.9
PGSC0003DMG400004628 Solanum tuberosum HOM05D005204 ORTHO05D006037 2.3e-38 165.2 693 27.4
Rhsim02G0007000 Rhododendron simsii HOM05D005204 ORTHO05D006037 4.0e-38 164.5 734 28.9
Sabra08G0151500 Salix brachista HOM05D005204 ORTHO05D006037 4.0e-38 164.5 738 28.2
Aqoxy5G00784 Aquilegia oxysepala HOM05D005204 ORTHO05D006037 5.2e-38 164.1 711 29.1
FAN17G1530 Fragaria x ananassa HOM05D005204 ORTHO05D006037 5.2e-38 164.1 774 28.0
SalBow5G0318 Salvia bowleyana HOM05D005204 ORTHO05D006037 5.2e-38 164.1 731 29.0
BcaC09g48627 Brassica carinata HOM05D005204 ORTHO05D006037 8.9e-38 163.3 740 27.3
Medtr2g436080 Medicago truncatula HOM05D005204 ORTHO05D006037 1.5e-37 162.5 717 27.8
Solyc12g099420.2 Solanum lycopersicum HOM05D005204 ORTHO05D006037 1.5e-37 162.5 706 28.2
Lalb_Chr20g0117381 Lupinus albus HOM05D005204 ORTHO05D006037 2.0e-37 162.2 702 26.9
FAN12G0364 Fragaria x ananassa HOM05D005204 ORTHO05D006037 2.6e-37 161.8 764 27.4
FvH4_4g18640 Fragaria vesca HOM05D005204 ORTHO05D006037 3.4e-37 161.4 758 28.4
Sopen12g034090 Solanum pennellii HOM05D005204 ORTHO05D006037 3.4e-37 161.4 705 28.1
COL.COLO4_13824 Corchorus olitorius HOM05D005204 ORTHO05D006037 4.4e-37 161.0 737 28.9
FAN12G3005 Fragaria x ananassa HOM05D005204 ORTHO05D006037 9.8e-37 159.8 725 28.0
PGR004G0276 Punica granatum HOM05D005204 ORTHO05D006037 1.3e-36 159.5 679 27.8
PSO832G0069 Papaver somniferum HOM05D005204 ORTHO05D006037 1.7e-36 159.1 686 27.3
Thecc.04G288800 Theobroma cacao HOM05D005204 ORTHO05D006037 2.9e-36 158.3 738 29.1
ECA246G1739 Erigeron canadensis HOM05D005204 ORTHO05D006037 3.7e-36 157.9 708 27.0
arahy.Tifrunner.gnm1.ann1.02VXE5 Arachis hypogaea HOM05D005204 ORTHO05D006037 4.9e-36 157.5 717 28.7
Duzib052G0651 Durio zibethinus HOM05D005204 ORTHO05D006037 4.9e-36 157.5 734 28.3
Migut.N00079 Erythranthe guttata HOM05D005204 ORTHO05D006037 6.4e-36 157.1 762 26.5
Oeu031982.1 Olea europaea HOM05D005204 ORTHO05D006037 6.4e-36 157.1 801 27.8
Potri.008G219100 Populus trichocarpa HOM05D005204 ORTHO05D006037 6.4e-36 157.1 693 27.4
CAN.G484.49 Capsicum annuum HOM05D005204 ORTHO05D006037 1.4e-35 156.0 773 27.3
arahy.Tifrunner.gnm1.ann1.J2HRGN Arachis hypogaea HOM05D005204 ORTHO05D006037 1.9e-35 155.6 715 28.8
Lj6g0026338 Lotus japonicus HOM05D005204 ORTHO05D006037 2.4e-35 155.2 731 27.6
Glyma.09G042300 Glycine max HOM05D005204 ORTHO05D006037 3.2e-35 154.8 734 27.0
Gohir.A02G050800 Gossypium hirsutum HOM05D005204 ORTHO05D006037 3.2e-35 154.8 704 30.1
TPR.G28067 Trifolium pratense HOM05D005204 ORTHO05D006037 4.1e-35 154.5 722 26.5
MELO3C010685.2 Cucumis melo HOM05D005204 ORTHO05D006037 5.4e-35 154.1 682 27.6
Ca_01912_v3 Cicer arietinum L. HOM05D005204 ORTHO05D006037 7.0e-35 153.7 745 26.0
Cfa015426 Carpinus fangiana HOM05D005204 ORTHO05D006037 9.2e-35 153.3 728 27.1
Prupe.1G123900 Prunus persica HOM05D005204 ORTHO05D006037 9.2e-35 153.3 769 27.8
Ciclev10004466m.g Citrus clementina HOM05D005204 ORTHO05D006037 1.2e-34 152.9 744 26.5
HPP92_012404 Vanilla planifolia HOM05D005204 ORTHO05D006037 1.2e-34 152.9 734 27.2
FAN07G2681 Fragaria x ananassa HOM05D005204 ORTHO05D006037 1.6e-34 152.5 698 28.1
QL06p010355 Quercus lobata HOM05D005204 ORTHO05D006037 1.6e-34 152.5 727 27.6
Potri.010G010480 Populus trichocarpa HOM05D005204 ORTHO05D006037 4.6e-34 151.0 698 27.5
vmacro15212 Vaccinium macrocarpon HOM05D005204 ORTHO05D006037 7.8e-34 150.2 711 28.0
RcHm_v2.0_Chr4g0423341 Rosa chinensis HOM05D005204 ORTHO05D006037 1.0e-33 149.8 790 27.3
HanXRQChr06g0173751 Helianthus annuus HOM05D005204 ORTHO05D006037 1.7e-33 149.1 680 27.6
Manes.03G200100 Manihot esculenta HOM05D005204 ORTHO05D006037 1.7e-33 149.1 760 27.0
Lsat_1_v5_gn_3_21680 Lactuca sativa HOM05D005204 ORTHO05D006037 3.0e-33 148.3 700 25.9
Aa31LG8G3820 Aethionema arabicum HOM05D005204 ORTHO05D006037 5.0e-33 147.5 715 26.9
VMungo1309G0885 Vigna mungo HOM05D005204 ORTHO05D006037 8.6e-33 146.7 714 26.3
Nitab4.5_0003484g0040 Nicotiana tabacum HOM05D005204 ORTHO05D006037 1.1e-32 146.4 724 26.7
Phvul.009G250500 Phaseolus vulgaris HOM05D005204 ORTHO05D006037 1.1e-32 146.4 703 27.0
EL10Ac3g06651 Beta vulgaris HOM05D005204 ORTHO05D006037 1.5e-32 146.0 688 26.3
Lalb_Chr18g0054391 Lupinus albus HOM05D005204 ORTHO05D006037 1.5e-32 146.0 729 25.8
Nitab4.5_0003767g0030 Nicotiana tabacum HOM05D005204 ORTHO05D006037 1.5e-32 146.0 770 25.8
Atru.chr4.2898 Acer truncatum HOM05D005204 ORTHO05D006037 1.9e-32 145.6 708 27.5
Psat1g155920 Pisum sativum HOM05D005204 ORTHO05D006037 1.9e-32 145.6 684 26.8
Glyma.15G150700 Glycine max HOM05D005204 ORTHO05D006037 3.3e-32 144.8 750 26.8
TAR633G1027 Trochodendron aralioides HOM05D005204 ORTHO05D006037 3.3e-32 144.8 770 26.6
Gohir.D02G055700 Gossypium hirsutum HOM05D005204 ORTHO05D006037 4.3e-32 144.4 748 28.7
MD16G1164600 Malus domestica HOM05D005204 ORTHO05D006037 7.3e-32 143.7 755 27.4
Gorai.005G061700 Gossypium raimondii HOM05D005204 ORTHO05D006037 9.5e-32 143.3 748 28.7
PRCOL_00000998 Prasinoderma coloniale HOM05D005204 ORTHO05D006037 3.6e-31 141.4 744 27.2
PSO210G5425 Papaver somniferum HOM05D005204 ORTHO05D006037 6.2e-31 140.6 687 26.2
DCAR_030505 Daucus carota HOM05D005204 ORTHO05D006037 1.1e-30 139.8 722 29.4
Sc13g0003240 Simmondsia chinensis HOM05D005204 ORTHO05D006037 1.8e-30 139.0 706 26.1
Sabra10G0006400 Salix brachista HOM05D005204 ORTHO05D006037 2.3e-30 138.7 723 28.4
Hund20528 Selenicereus undatus HOM05D005204 ORTHO05D006037 2.3e-30 138.7 686 29.0
Zm00001eb322750 Zea mays HOM05D005204 ORTHO05D006037 2.3e-30 138.7 742 27.1
Cpa.g.sc50.164 Carica papaya HOM05D005204 ORTHO05D006037 4.0e-30 137.9 791 25.9
CiPaw.02G079900 Carya illinoinensis HOM05D005204 ORTHO05D006037 4.0e-30 137.9 745 27.0
Cc03_g01540 Coffea canephora HOM05D005204 ORTHO05D006037 5.2e-30 137.5 729 26.6
Sed0015514 Sechium edule HOM05D005204 ORTHO05D006037 6.8e-30 137.1 713 26.8
ClCG08G017750 Citrullus lanatus HOM05D005204 ORTHO05D006037 8.9e-30 136.7 691 25.8
DCAR_023300 Daucus carota HOM05D005204 ORTHO05D006037 2.6e-29 135.2 702 26.8
Nitab4.5_0000695g0090 Nicotiana tabacum HOM05D005204 ORTHO05D006037 3.4e-29 134.8 743 26.5
SGA_v2.0_scaffold428G51532 Striga asiatica HOM05D005204 ORTHO05D006037 9.8e-29 133.3 743 26.0
CSS0048761 Camellia sinensis var. sinensis HOM05D005204 ORTHO05D006037 2.2e-28 132.1 743 26.2
Eucgr.H03961 Eucalyptus grandis HOM05D005204 ORTHO05D006037 2.2e-28 132.1 767 26.7
CsaV3_2G024870 Cucumis sativus L. HOM05D005204 ORTHO05D006037 3.7e-28 131.3 699 26.6
CsaV3_7G000690 Cucumis sativus L. HOM05D005204 ORTHO05D006037 6.4e-28 130.6 678 26.5
Peaxi162Scf00065g01219 Petunia axillaris HOM05D005204 ORTHO05D006037 8.3e-28 130.2 754 24.7
Actinidia14280 Actinidia chinensis HOM05D005204 ORTHO05D006037 2.4e-27 128.6 697 27.3
CARHR091980 Cardamine hirsuta HOM05D005204 ORTHO05D006037 2.4e-27 128.6 194 41.8
Nitab4.5_0000570g0320 Nicotiana tabacum HOM05D005204 ORTHO05D006037 7.1e-27 127.1 724 26.0
Lj6A680G91 Lonicera japonica HOM05D005204 ORTHO05D006037 1.6e-26 125.9 250 38.0
MD13G1164900 Malus domestica HOM05D005204 ORTHO05D006037 3.5e-26 124.8 764 27.7
Manes.03G198500 Manihot esculenta HOM05D005204 ORTHO05D006037 3.5e-26 124.8 677 26.9
Dinv29726 Davidia involucrata HOM05D005204 ORTHO05D006037 6.0e-26 124.0 212 39.2
GSVIVG01035108001 Vitis vinifera HOM05D005204 ORTHO05D006037 7.8e-26 123.6 750 27.5
AUR62015273 Chenopodium quinoa HOM05D005204 ORTHO05D006037 6.6e-25 120.6 679 27.1
SHI00244 Sapria himalayana HOM05D005204 ORTHO05D006037 6.6e-25 120.6 755 26.5
ATR0693G078 Amborella trichopoda HOM05D005204 ORTHO05D006037 1.5e-24 119.4 208 41.3
Nn3g19294 Nelumbo nucifera HOM05D005204 ORTHO05D006037 3.3e-24 118.2 345 31.0
MSTRG.24802 Avicennia marina HOM05D005204 ORTHO05D006037 4.3e-24 117.9 723 25.3
Os07g0517300 Oryza sativa ssp. japonica HOM05D005204 ORTHO05D006037 7.3e-24 117.1 676 27.4
CDE05G2961 Ceratophyllum demersum HOM05D005204 ORTHO05D006037 1.4e-22 112.8 352 31.0
Zm00001eb106060 Zea mays HOM05D005204 ORTHO05D006037 1.8e-22 112.5 179 40.2
Haze_01167 Corylus avellana HOM05D005204 ORTHO05D006037 7.6e-21 107.1 868 24.7
Ah.04g153660 Amaranthus hybridus HOM05D005204 ORTHO05D006037 3.2e-19 101.7 687 24.7
AUR62018070 Chenopodium quinoa HOM05D005204 ORTHO05D006037 5.1e-17 94.4 706 26.6
unitig_749.g14080 Utricularia gibba HOM05D005204 ORTHO05D006037 6.6e-17 94.0 250 30.0
Dinv44351 Davidia involucrata HOM05D005204 ORTHO05D006037 8.6e-17 93.6 111 45.9
Cre09.g408900 Chlamydomonas reinhardtii HOM05D005204 ORTHO05D006037 9.6e-16 90.1 913 23.0
CARHR091990 Cardamine hirsuta HOM05D005204 ORTHO05D006037 8.9e-14 83.6 444 25.2
Actinidia13388 Actinidia chinensis HOM05D005204 ORTHO05D006037 2.6e-13 82.0 103 45.6
Dinv29725 Davidia involucrata HOM05D005204 ORTHO05D006037 3.8e-12 78.2 87 47.1
TAR362G0889 Trochodendron aralioides HOM05D005204 ORTHO05D006037 1.1e-11 76.6 97 44.3
DCAR_031703 Daucus carota HOM05D005204 ORTHO05D006037 1.4e-11 76.3 116 38.8
AagrBONN_evm.TU.Sc2ySwM_340.303 Anthoceros agrestis HOM05D005204 ORTHO05D006037 4.6e-10 71.2 566 26.0
PGR004G0772 Punica granatum HOM05D005204 ORTHO05D006037 3.0e-09 68.6 89 41.6
TAR624G0737 Trochodendron aralioides HOM05D005204 ORTHO05D006037 3.3e-08 65.1 97 40.2
Manes.17G118669 Manihot esculenta HOM05D005204 ORTHO05D006037 2.4e-06 58.9 82 41.5
Zm00001eb139240 Zea mays HOM05D001287 ORTHO05D006037 3.1e-06 58.5 76 44.7


User provided reference genes

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