Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g37936 Chara braunii HOM05D019869 ORTHO05D028728 0.0e+00 1671.0 811 100.0
CBR_g6331 Chara braunii HOM05D007407 ORTHO05D009298 4.6e-75 287.0 161 85.7
SMO273G0017 Selaginella moellendorffii HOM05D019869 ORTHO05D028728 9.8e-41 172.9 269 34.6
SMO328G0016 Selaginella moellendorffii HOM05D019869 ORTHO05D028728 1.7e-32 145.6 177 40.7
SMO164G0185 Selaginella moellendorffii HOM05D019869 ORTHO05D028728 4.6e-30 137.5 187 38.5
SMO116G0460 Selaginella moellendorffii HOM05D019869 ORTHO05D374636 3.3e-28 131.3 190 38.4
SMO332G0006 Selaginella moellendorffii HOM05D031499 ORTHO05D378339 1.4e-18 99.4 255 31.0
SMO117G0198 Selaginella moellendorffii HOM05D031499 ORTHO05D376679 2.0e-17 95.5 226 31.0
SMO114G0057 Selaginella moellendorffii HOM05D031499 ORTHO05D373932 3.7e-16 91.3 229 30.1
Carub.0007s0650 Capsella rubella HOM05D007407 ORTHO05D009298 4.6e-14 84.3 83 45.8
Pp3c22_18210 Physcomitrium patens HOM05D007407 ORTHO05D009298 7.8e-14 83.6 118 41.5
SalBow3G4546 Salvia bowleyana HOM05D007407 ORTHO05D009298 3.0e-13 81.6 73 52.1
Oeu044262.1 Olea europaea HOM05D007407 ORTHO05D009298 5.1e-13 80.9 83 44.6
AL7G17500 Arabidopsis lyrata HOM05D007407 ORTHO05D009298 6.6e-13 80.5 83 43.4
Cc02_g19580 Coffea canephora HOM05D007407 ORTHO05D009298 6.6e-13 80.5 83 44.6
AT4G33925 Arabidopsis thaliana HOM05D007407 ORTHO05D009298 1.1e-12 79.7 83 43.4
Thhalv10026553m.g Eutrema salsugineum HOM05D007407 ORTHO05D009298 1.1e-12 79.7 83 43.4
HPP92_010144 Vanilla planifolia HOM05D007407 ORTHO05D009298 1.1e-12 79.7 80 47.5
BraA01t00434Z Brassica rapa HOM05D007407 ORTHO05D009298 1.5e-12 79.3 83 43.4
CARHR242020 Cardamine hirsuta HOM05D007407 ORTHO05D009298 1.5e-12 79.3 83 43.4
Sp7g31660 Schrenkiella parvula HOM05D007407 ORTHO05D009298 1.5e-12 79.3 83 43.4
Aa31sc211G10 Aethionema arabicum HOM05D007407 ORTHO05D009298 1.9e-12 79.0 74 48.6
CANSAT25G2132 Cannabis sativa HOM05D007407 ORTHO05D009298 2.5e-12 78.6 94 35.1
HanXRQChr16g0509111 Helianthus annuus HOM05D007407 ORTHO05D009298 2.5e-12 78.6 73 49.3
THA.LOC104807229 Tarenaya hassleriana HOM05D007407 ORTHO05D009298 2.5e-12 78.6 86 48.8
Peaxi162Scf00152g00338 Petunia axillaris HOM05D007407 ORTHO05D009298 5.6e-12 77.4 83 44.6
TWI59G1341 Tripterygium wilfordii HOM05D007407 ORTHO05D009298 5.6e-12 77.4 94 41.5
C01p04860 Brassica napus HOM05D007407 ORTHO05D009298 7.3e-12 77.0 70 50.0
BolC1t00470H Brassica oleracea HOM05D007407 ORTHO05D009298 7.3e-12 77.0 70 50.0
Nitab4.5_0000088g0130 Nicotiana tabacum HOM05D007407 ORTHO05D009298 7.3e-12 77.0 73 47.9
Solyc11g044330.3 Solanum lycopersicum HOM05D007407 ORTHO05D009298 7.3e-12 77.0 88 42.0
Zm00001eb326460 Zea mays HOM05D007407 ORTHO05D009298 9.5e-12 76.6 83 47.0
Sopen11g019840 Solanum pennellii HOM05D007407 ORTHO05D009298 1.2e-11 76.3 88 42.0
CANSAT25G3533 Cannabis sativa HOM05D007407 ORTHO05D009298 1.6e-11 75.9 94 34.0
Potri.009G091800 Populus trichocarpa HOM05D007407 ORTHO05D009298 2.1e-11 75.5 74 45.9
Sabra09G0070800 Salix brachista HOM05D007407 ORTHO05D009298 2.1e-11 75.5 74 45.9
AagrBONN_evm.TU.Sc2ySwM_228.2221 Anthoceros agrestis HOM05D007407 ORTHO05D009298 2.8e-11 75.1 81 38.3
TAR628G1347 Trochodendron aralioides HOM05D007407 ORTHO05D009298 2.8e-11 75.1 83 42.2
CAN.G13.9 Capsicum annuum HOM05D007407 ORTHO05D009298 3.6e-11 74.7 91 39.6
FvH4_2g04570 Fragaria vesca HOM05D007407 ORTHO05D009298 3.6e-11 74.7 79 44.3
Lsat_1_v5_gn_7_86121 Lactuca sativa HOM05D007407 ORTHO05D009298 3.6e-11 74.7 71 50.7
Eucgr.I01082 Eucalyptus grandis HOM05D007407 ORTHO05D009298 4.7e-11 74.3 73 47.9
RcHm_v2.0_Chr6g0254151 Rosa chinensis HOM05D007407 ORTHO05D009298 4.7e-11 74.3 79 44.3
Ciclev10029563m.g Citrus clementina HOM05D007407 ORTHO05D009298 6.2e-11 73.9 72 45.8
FAN27G0322 Fragaria x ananassa HOM05D007407 ORTHO05D009298 6.2e-11 73.9 79 44.3
MD10G1101800 Malus domestica HOM05D007407 ORTHO05D009298 8.1e-11 73.6 73 47.9
Nn1g04637 Nelumbo nucifera HOM05D007407 ORTHO05D009298 8.1e-11 73.6 77 48.1
MSTRG.27752 Avicennia marina HOM05D007407 ORTHO05D009298 1.1e-10 73.2 83 43.4
AUR62008735 Chenopodium quinoa HOM05D007407 ORTHO05D009298 1.1e-10 73.2 73 47.9
Sed0024111 Sechium edule HOM05D007407 ORTHO05D009298 1.1e-10 73.2 73 43.8
Hund12642 Selenicereus undatus HOM05D007407 ORTHO05D009298 1.1e-10 73.2 73 49.3
Actinidia34378 Actinidia chinensis HOM05D007407 ORTHO05D009298 1.4e-10 72.8 83 41.0
Nitab4.5_0000700g0060 Nicotiana tabacum HOM05D007407 ORTHO05D009298 1.4e-10 72.8 72 44.4
Sc18g0003630 Simmondsia chinensis HOM05D007407 ORTHO05D009298 1.4e-10 72.8 73 45.2
CiPaw.05G014900 Carya illinoinensis HOM05D007407 ORTHO05D009298 1.8e-10 72.4 83 41.0
Mapoly0083s0061 Marchantia polymorpha HOM05D007407 ORTHO05D009298 1.8e-10 72.4 80 40.0
RhsimUnG0126400 Rhododendron simsii HOM05D007407 ORTHO05D009298 1.8e-10 72.4 83 43.4
Thecc.02G113100 Theobroma cacao HOM05D007407 ORTHO05D009298 1.8e-10 72.4 74 43.2
EL10Ac6g13315 Beta vulgaris HOM05D007407 ORTHO05D009298 2.3e-10 72.0 73 49.3
CsaV3_4G000500 Cucumis sativus L. HOM05D007407 ORTHO05D009298 2.3e-10 72.0 73 45.2
Migut.I00274 Erythranthe guttata HOM05D007407 ORTHO05D009298 2.3e-10 72.0 73 43.8
Cpa.g.c35560 Carica papaya HOM05D007407 ORTHO05D009298 3.1e-10 71.6 72 47.2
MD05G1094600 Malus domestica HOM05D007407 ORTHO05D009298 3.1e-10 71.6 91 40.7
QL11p032060 Quercus lobata HOM05D007407 ORTHO05D009298 4.0e-10 71.2 83 39.8
Rhsim11G0155200 Rhododendron simsii HOM05D007407 ORTHO05D009298 4.0e-10 71.2 73 46.6
Hma1.2p1_1023F.1_g248940 Hydrangea macrophylla HOM05D007407 ORTHO05D009298 5.2e-10 70.9 83 39.8
arahy.Tifrunner.gnm1.ann1.2Y2YM1 Arachis hypogaea HOM05D007407 ORTHO05D009298 6.8e-10 70.5 74 47.3
arahy.Tifrunner.gnm1.ann1.D6X9Y4 Arachis hypogaea HOM05D007407 ORTHO05D009298 6.8e-10 70.5 74 47.3
Duzib052G0893 Durio zibethinus HOM05D007407 ORTHO05D009298 6.8e-10 70.5 74 43.2
FAN15G3071 Fragaria x ananassa HOM05D007407 ORTHO05D009298 6.8e-10 70.5 79 43.0
Aqoxy6G02771 Aquilegia oxysepala HOM05D007407 ORTHO05D009298 1.2e-09 69.7 76 42.1
DCAR_001669 Daucus carota HOM05D007407 ORTHO05D009298 1.2e-09 69.7 70 45.7
ClCG10G010580 Citrullus lanatus HOM05D007407 ORTHO05D009298 1.5e-09 69.3 73 42.5
ECA236G1324 Erigeron canadensis HOM05D007407 ORTHO05D009298 1.5e-09 69.3 61 50.8
Gohir.A03G184200 Gossypium hirsutum HOM05D007407 ORTHO05D009298 2.0e-09 68.9 78 39.7
Gohir.D02G205700 Gossypium hirsutum HOM05D007407 ORTHO05D009298 2.0e-09 68.9 78 39.7
Gorai.005G233100 Gossypium raimondii HOM05D007407 ORTHO05D009298 2.0e-09 68.9 78 39.7
Medtr3g010320 Medicago truncatula HOM05D007407 ORTHO05D009298 2.0e-09 68.9 92 40.2
Psat5g233480 Pisum sativum HOM05D007407 ORTHO05D009298 2.6e-09 68.6 73 45.2
SMO334G0053 Selaginella moellendorffii HOM05D031499 ORTHO05D376133 2.6e-09 68.6 201 24.9
TPR.G5138 Trifolium pratense HOM05D007407 ORTHO05D009298 3.4e-09 68.2 73 45.2
Glyma.04G111400 Glycine max HOM05D007407 ORTHO05D009298 4.4e-09 67.8 73 43.8
Medtr0393s0040 Medicago truncatula HOM05D007407 ORTHO05D009298 4.4e-09 67.8 73 45.2
SEGI_09286 Sequoiadendron giganteum HOM05D007407 ORTHO05D009298 4.4e-09 67.8 77 40.3
GSVIVG01037877001 Vitis vinifera HOM05D007407 ORTHO05D009298 4.4e-09 67.8 73 42.5
Lalb_Chr18g0048491 Lupinus albus HOM05D007407 ORTHO05D009298 5.8e-09 67.4 78 39.7
Dinv42215 Davidia involucrata HOM05D007407 ORTHO05D009298 9.9e-09 66.6 68 45.6
SHI05205 Sapria himalayana HOM05D007407 ORTHO05D009298 1.3e-08 66.2 68 44.1
Atru.chr5.2418 Acer truncatum HOM05D007407 ORTHO05D009298 2.2e-08 65.5 71 42.3
Lj3g0017118 Lotus japonicus HOM05D007407 ORTHO05D009298 3.7e-08 64.7 73 42.5
Phvul.005G003200 Phaseolus vulgaris HOM05D007407 ORTHO05D009298 3.7e-08 64.7 73 42.5
Glyma.06G322800 Glycine max HOM05D007407 ORTHO05D009298 4.9e-08 64.3 73 42.5
SGA_v2.0_scaffold13G06621 Striga asiatica HOM05D007407 ORTHO05D009298 8.4e-08 63.5 71 40.8
VMungo1080G0753 Vigna mungo HOM05D007407 ORTHO05D009298 8.4e-08 63.5 72 41.7
Cre16.g668000 Chlamydomonas reinhardtii HOM05D007407 ORTHO05D009298 2.4e-07 62.0 78 39.7
vmacro01981 Vaccinium macrocarpon HOM05D007407 ORTHO05D009298 4.1e-07 61.2 73 42.5
PGSC0003DMG400023130 Solanum tuberosum HOM05D007407 ORTHO05D009298 2.1e-06 58.9 56 46.4
SMO330G0043 Selaginella moellendorffii HOM05D007407 ORTHO05D009298 4.6e-06 57.8 73 41.1


User provided reference genes

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