Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g3792 Chara braunii HOM05D006422 ORTHO05D007992 1.1e-188 663.3 358 100.0
CDE04G2326 Ceratophyllum demersum HOM05D006422 ORTHO05D007992 2.1e-35 154.1 174 44.3
Mapoly0021s0119 Marchantia polymorpha HOM05D006422 ORTHO05D007992 6.0e-35 152.5 193 39.9
Cre12.g502250 Chlamydomonas reinhardtii HOM05D006422 ORTHO05D007992 5.1e-34 149.4 188 44.7
unitig_748.g7381 Utricularia gibba HOM05D006422 ORTHO05D007992 7.4e-33 145.6 173 40.5
Zm00001eb071430 Zea mays HOM05D006422 ORTHO05D007992 9.6e-33 145.2 173 43.4
Dinv10868 Davidia involucrata HOM05D006422 ORTHO05D007992 2.8e-32 143.7 174 41.4
Dinv26550 Davidia involucrata HOM05D006422 ORTHO05D007992 2.8e-32 143.7 174 41.4
Aqoxy5G03915 Aquilegia oxysepala HOM05D006422 ORTHO05D007992 3.7e-32 143.3 198 38.4
MBI13_g31531_MAGBIO Magnolia biondii HOM05D006422 ORTHO05D007992 3.7e-32 143.3 173 41.0
DCAR_003025 Daucus carota HOM05D006422 ORTHO05D007992 6.2e-32 142.5 173 43.4
MD15G1109900 Malus domestica HOM05D006422 ORTHO05D007992 1.1e-31 141.7 169 42.0
Manes.16G136400 Manihot esculenta HOM05D006422 ORTHO05D007992 1.4e-31 141.4 173 39.3
SEGI_33970 Sequoiadendron giganteum HOM05D006422 ORTHO05D007992 1.4e-31 141.4 179 38.5
PSO170G4757 Papaver somniferum HOM05D006422 ORTHO05D007992 1.8e-31 141.0 173 40.5
Os04g0607000 Oryza sativa ssp. japonica HOM05D006422 ORTHO05D007992 2.4e-31 140.6 173 42.2
Actinidia03579 Actinidia chinensis HOM05D006422 ORTHO05D007992 4.0e-31 139.8 173 41.0
PSO017G3510 Papaver somniferum HOM05D006422 ORTHO05D007992 6.9e-31 139.0 173 39.9
Sabra06G0214100 Salix brachista HOM05D006422 ORTHO05D007992 6.9e-31 139.0 173 39.3
ATR0626G032 Amborella trichopoda HOM05D006422 ORTHO05D007992 9.0e-31 138.7 179 39.1
Pp3c13_4790 Physcomitrium patens HOM05D006422 ORTHO05D007992 9.0e-31 138.7 210 37.1
Potri.006G276400 Populus trichocarpa HOM05D006422 ORTHO05D007992 9.0e-31 138.7 173 38.7
Solyc08g006160.4 Solanum lycopersicum HOM05D006422 ORTHO05D007992 9.0e-31 138.7 173 39.3
Sopen08g002130 Solanum pennellii HOM05D006422 ORTHO05D007992 1.2e-30 138.3 173 39.3
HPP92_004705 Vanilla planifolia HOM05D006422 ORTHO05D007992 1.5e-30 137.9 173 39.9
Atru.chr7.2615_Atru.chr7.2616 Acer truncatum HOM05D006422 ORTHO05D007992 2.0e-30 137.5 173 39.9
RcHm_v2.0_Chr6g0312201 Rosa chinensis HOM05D006422 ORTHO05D007992 3.4e-30 136.7 169 41.4
FvH4_2g30680 Fragaria vesca HOM05D006422 ORTHO05D007992 4.5e-30 136.3 169 41.4
FAN24G2382 Fragaria x ananassa HOM05D006422 ORTHO05D007992 4.5e-30 136.3 169 41.4
FAN27G3442 Fragaria x ananassa HOM05D006422 ORTHO05D007992 4.5e-30 136.3 169 40.8
MCO15G093 Micromonas commoda HOM05D006422 ORTHO05D007992 5.8e-30 136.0 199 38.7
Peaxi162Scf00045g01530 Petunia axillaris HOM05D006422 ORTHO05D007992 5.8e-30 136.0 166 40.4
Nn1g01726 Nelumbo nucifera HOM05D006422 ORTHO05D007992 7.6e-30 135.6 173 39.9
Eucgr.C02103 Eucalyptus grandis HOM05D006422 ORTHO05D007992 1.0e-29 135.2 173 38.7
Prupe.1G462100 Prunus persica HOM05D006422 ORTHO05D007992 1.0e-29 135.2 169 39.6
arahy.Tifrunner.gnm1.ann1.43EIBT Arachis hypogaea HOM05D006422 ORTHO05D007992 1.3e-29 134.8 173 40.5
Migut.A00443 Erythranthe guttata HOM05D006422 ORTHO05D007992 1.3e-29 134.8 175 36.0
GSVIVG01035544001 Vitis vinifera HOM05D006422 ORTHO05D007992 1.3e-29 134.8 173 40.5
Cfa013253 Carpinus fangiana HOM05D006422 ORTHO05D007992 1.7e-29 134.4 173 37.6
Ciclev10009324m.g Citrus clementina HOM05D006422 ORTHO05D007992 1.7e-29 134.4 173 38.2
Cc04_g09430 Coffea canephora HOM05D006422 ORTHO05D007992 1.7e-29 134.4 173 38.7
Sc09g0007930 Simmondsia chinensis HOM05D006422 ORTHO05D007992 1.7e-29 134.4 174 39.7
arahy.Tifrunner.gnm1.ann1.D9GJPD Arachis hypogaea HOM05D006422 ORTHO05D007992 2.2e-29 134.0 173 40.5
A03p09710 Brassica napus HOM05D006422 ORTHO05D007992 2.2e-29 134.0 173 41.6
BolC3t13599H Brassica oleracea HOM05D006422 ORTHO05D007992 2.2e-29 134.0 173 41.6
BraA03t10287Z Brassica rapa HOM05D006422 ORTHO05D007992 2.2e-29 134.0 173 41.6
BcaB01g04822 Brassica carinata HOM05D006422 ORTHO05D007992 2.9e-29 133.7 173 41.6
C03p11290 Brassica napus HOM05D006422 ORTHO05D007992 2.9e-29 133.7 173 41.6
CiPaw.07G214400 Carya illinoinensis HOM05D006422 ORTHO05D007992 2.9e-29 133.7 173 37.0
AUR62020627 Chenopodium quinoa HOM05D006422 ORTHO05D007992 2.9e-29 133.7 172 38.4
COL.COLO4_18610 Corchorus olitorius HOM05D006422 ORTHO05D007992 2.9e-29 133.7 173 36.4
Hma1.2p1_0534F.1_g173720 Hydrangea macrophylla HOM05D006422 ORTHO05D007992 3.8e-29 133.3 173 39.3
THA.LOC104811048 Tarenaya hassleriana HOM05D006422 ORTHO05D007992 3.8e-29 133.3 173 39.9
TWI34G0909 Tripterygium wilfordii HOM05D006422 ORTHO05D007992 3.8e-29 133.3 173 37.0
AagrBONN_evm.TU.Sc2ySwM_228.4709 Anthoceros agrestis HOM05D006422 ORTHO05D007992 4.9e-29 132.9 165 40.6
Lalb_Chr14g0362181 Lupinus albus HOM05D006422 ORTHO05D007992 4.9e-29 132.9 174 39.1
PGSC0003DMG400009533 Solanum tuberosum HOM05D006422 ORTHO05D007992 8.4e-29 132.1 173 38.2
CAN.G1364.3 Capsicum annuum HOM05D006422 ORTHO05D007992 1.1e-28 131.7 173 37.6
AL6G31470 Arabidopsis lyrata HOM05D006422 ORTHO05D007992 1.4e-28 131.3 174 40.2
TAR383G0184 Trochodendron aralioides HOM05D006422 ORTHO05D007992 1.4e-28 131.3 173 38.7
AT5G19940 Arabidopsis thaliana HOM05D006422 ORTHO05D007992 1.9e-28 131.0 174 40.2
BcaB01g04848 Brassica carinata HOM05D006422 ORTHO05D007992 1.9e-28 131.0 173 40.5
Carub.0006s1831 Capsella rubella HOM05D006422 ORTHO05D007992 1.9e-28 131.0 174 40.2
Duzib168G1765 Durio zibethinus HOM05D006422 ORTHO05D007992 2.5e-28 130.6 173 37.6
Medtr1g009980 Medicago truncatula HOM05D006422 ORTHO05D007992 2.5e-28 130.6 174 39.1
Psat6g032000 Pisum sativum HOM05D006422 ORTHO05D007992 2.5e-28 130.6 174 39.1
MSTRG.11814 Avicennia marina HOM05D006422 ORTHO05D007992 3.2e-28 130.2 173 37.6
Ca_12880_v3 Cicer arietinum L. HOM05D006422 ORTHO05D007992 4.2e-28 129.8 174 39.7
Thecc.09G005200 Theobroma cacao HOM05D006422 ORTHO05D007992 4.2e-28 129.8 173 37.6
AUR62038756 Chenopodium quinoa HOM05D006422 ORTHO05D007992 5.5e-28 129.4 166 39.2
Haze_21696 Corylus avellana HOM05D006422 ORTHO05D007992 5.5e-28 129.4 166 36.7
Lsat_1_v5_gn_5_61061 Lactuca sativa HOM05D006422 ORTHO05D007992 5.5e-28 129.4 189 37.6
Thhalv10014537m.g Eutrema salsugineum HOM05D006422 ORTHO05D007992 7.1e-28 129.0 173 38.7
PGR042G1463 Punica granatum HOM05D006422 ORTHO05D007992 9.3e-28 128.6 173 36.4
QL12p024696 Quercus lobata HOM05D006422 ORTHO05D007992 9.3e-28 128.6 174 37.4
VMungo0647G2190 Vigna mungo HOM05D006422 ORTHO05D007992 9.3e-28 128.6 173 37.6
CARHR192910 Cardamine hirsuta HOM05D006422 ORTHO05D007992 1.2e-27 128.3 174 39.7
Rhsim07G0170200 Rhododendron simsii HOM05D006422 ORTHO05D007992 1.2e-27 128.3 199 36.7
TPR.G11997 Trifolium pratense HOM05D006422 ORTHO05D007992 1.2e-27 128.3 174 39.1
vmacro05107 Vaccinium macrocarpon HOM05D006422 ORTHO05D007992 1.2e-27 128.3 181 37.0
BcaC04g19400 Brassica carinata HOM05D006422 ORTHO05D007992 1.6e-27 127.9 173 39.9
A10p19790 Brassica napus HOM05D006422 ORTHO05D007992 1.6e-27 127.9 173 39.9
C09p56110 Brassica napus HOM05D006422 ORTHO05D007992 1.6e-27 127.9 173 39.9
BolC9t58478H Brassica oleracea HOM05D006422 ORTHO05D007992 1.6e-27 127.9 173 39.9
BraA10t44055Z Brassica rapa HOM05D006422 ORTHO05D007992 1.6e-27 127.9 173 39.9
Gohir.D06G108900 Gossypium hirsutum HOM05D006422 ORTHO05D007992 1.6e-27 127.9 220 35.0
HanXRQChr13g0412481 Helianthus annuus HOM05D006422 ORTHO05D007992 2.1e-27 127.5 192 36.5
Phvul.001G058000 Phaseolus vulgaris HOM05D006422 ORTHO05D007992 2.7e-27 127.1 173 37.6
BcaB08g36552 Brassica carinata HOM05D006422 ORTHO05D007992 3.5e-27 126.7 173 39.9
CANSAT25G0758 Cannabis sativa HOM05D006422 ORTHO05D007992 3.5e-27 126.7 173 37.0
Gorai.010G123700 Gossypium raimondii HOM05D006422 ORTHO05D007992 3.5e-27 126.7 220 34.5
Lj5g0012981 Lotus japonicus HOM05D006422 ORTHO05D007992 4.6e-27 126.3 173 37.0
Sp6g24440 Schrenkiella parvula HOM05D006422 ORTHO05D007992 6.0e-27 125.9 173 39.9
Aa31LG9G9500 Aethionema arabicum HOM05D006422 ORTHO05D007992 7.9e-27 125.6 173 36.4
Nitab4.5_0000025g0080 Nicotiana tabacum HOM05D006422 ORTHO05D007992 7.9e-27 125.6 196 34.2
Gohir.A06G106700 Gossypium hirsutum HOM05D006422 ORTHO05D007992 6.7e-26 122.5 224 34.4
Oeu018400.2 Olea europaea HOM05D006422 ORTHO05D007992 6.7e-26 122.5 157 37.6
SMO364G0843 Selaginella moellendorffii HOM05D006422 ORTHO05D007992 1.1e-25 121.7 165 35.2
SGA_v2.0_scaffold27G11666 Striga asiatica HOM05D006422 ORTHO05D007992 1.1e-25 121.7 173 34.7
Nitab4.5_0003259g0070 Nicotiana tabacum HOM05D006422 ORTHO05D007992 5.7e-25 119.4 185 34.1
EL10Ac2g03719 Beta vulgaris HOM05D006422 ORTHO05D007992 3.7e-24 116.7 189 32.8
ClCG08G012780 Citrullus lanatus HOM05D006422 ORTHO05D007992 1.1e-23 115.2 173 35.3
ECA240G0283 Erigeron canadensis HOM05D000069 ORTHO05D000060 1.1e-23 115.2 155 40.0
PRCOL_00004658 Prasinoderma coloniale HOM05D006422 ORTHO05D007992 1.1e-23 115.2 204 37.7
FAN20G1184 Fragaria x ananassa HOM05D006422 ORTHO05D007992 2.0e-22 110.9 149 40.3
Lj7A749G60 Lonicera japonica HOM05D006422 ORTHO05D007992 1.3e-21 108.2 122 40.2
Glyma.17G201600 Glycine max HOM05D006422 ORTHO05D007992 2.2e-21 107.5 158 36.7
FAN15G3645 Fragaria x ananassa HOM05D006422 ORTHO05D007992 1.1e-17 95.1 130 40.0
Gorai.002G101300 Gossypium raimondii HOM05D006422 ORTHO05D007992 7.4e-17 92.4 113 42.5
MELO3C011201.2 Cucumis melo HOM05D006422 ORTHO05D007992 8.2e-16 89.0 115 40.0
CiPaw.08G017800 Carya illinoinensis HOM05D006422 ORTHO05D007992 5.3e-15 86.3 233 29.2
Hma1.2p1_0534F.1_g173730 Hydrangea macrophylla HOM05D006422 ORTHO05D007992 9.1e-15 85.5 114 40.4
CSS0034711 Camellia sinensis var. sinensis HOM05D006422 ORTHO05D007992 2.0e-14 84.3 151 31.1
Ah.11g043920 Amaranthus hybridus HOM05D006422 ORTHO05D007992 1.0e-13 82.0 173 30.1
CSS0017479 Camellia sinensis var. sinensis HOM05D006422 ORTHO05D007992 1.1e-12 78.6 120 33.3
Cre07.g325736 Chlamydomonas reinhardtii HOM05D006422 ORTHO05D007992 6.1e-11 72.8 118 33.9
AagrBONN_evm.TU.Sc2ySwM_344.1832 Anthoceros agrestis HOM05D003483 ORTHO05D004101 1.1e-09 68.6 186 29.0
Oeu014126.1 Olea europaea HOM05D006422 ORTHO05D007992 1.5e-09 68.2 90 34.4
SMO347G0483 Selaginella moellendorffii HOM05D003483 ORTHO05D004101 2.6e-09 67.4 179 27.9
Pp3c1_42950 Physcomitrium patens HOM05D003483 ORTHO05D004101 7.4e-09 65.9 219 26.0
PGR142G1721 Punica granatum HOM05D003483 ORTHO05D004101 2.8e-08 63.9 178 27.0
Hma1.2p1_0557F.1_g178380 Hydrangea macrophylla HOM05D003483 ORTHO05D004101 6.3e-08 62.8 181 26.0
Sc06g0009790 Simmondsia chinensis HOM05D003483 ORTHO05D004101 8.2e-08 62.4 179 26.8
Pp3c23_15450 Physcomitrium patens HOM05D003483 ORTHO05D004101 1.1e-07 62.0 183 29.0
HanXRQChr06g0185051 Helianthus annuus HOM05D003483 ORTHO05D004101 1.4e-07 61.6 178 26.4
Lsat_1_v5_gn_9_118261 Lactuca sativa HOM05D003483 ORTHO05D004101 1.4e-07 61.6 178 26.4
PRCOL_00003721 Prasinoderma coloniale HOM05D003483 ORTHO05D002254 1.4e-07 61.6 198 24.7
CSS0035518 Camellia sinensis var. sinensis HOM05D006422 ORTHO05D007992 1.8e-07 61.2 181 27.1
Nn1g08897 Nelumbo nucifera HOM05D003483 ORTHO05D004101 1.8e-07 61.2 177 24.3
Zm00001eb054390 Zea mays HOM05D003483 ORTHO05D004101 1.8e-07 61.2 241 29.9
Cc02_g22380 Coffea canephora HOM05D003483 ORTHO05D004101 2.4e-07 60.8 180 26.1
Lj9A307T41 Lonicera japonica HOM05D003483 ORTHO05D004101 2.4e-07 60.8 179 25.7
GSVIVG01022995001 Vitis vinifera HOM05D003483 ORTHO05D004101 2.4e-07 60.8 178 25.3
ECA240G4797 Erigeron canadensis HOM05D003483 ORTHO05D008021 3.1e-07 60.5 176 27.3
MCO03G426 Micromonas commoda HOM05D003483 ORTHO05D004101 3.1e-07 60.5 180 28.9
ATR0684G013 Amborella trichopoda HOM05D003483 ORTHO05D004101 4.1e-07 60.1 179 24.0
Manes.07G014500 Manihot esculenta HOM05D003483 ORTHO05D004101 5.3e-07 59.7 179 26.8
CsaV3_1G045010 Cucumis sativus L. HOM05D003483 ORTHO05D004101 7.0e-07 59.3 182 24.7
vmacro01768 Vaccinium macrocarpon HOM05D003483 ORTHO05D004101 7.0e-07 59.3 179 24.6
CiPaw.05G043400 Carya illinoinensis HOM05D003483 ORTHO05D004101 9.1e-07 58.9 180 27.8
Rhsim11G0130100 Rhododendron simsii HOM05D003483 ORTHO05D004101 1.5e-06 58.2 178 24.7
Cre03.g188650 Chlamydomonas reinhardtii HOM05D003483 ORTHO05D004101 2.0e-06 57.8 187 27.8
Cre12.g503350 Chlamydomonas reinhardtii HOM05D034536 ORTHO05D034539 2.0e-06 57.8 238 26.9
Phvul.002G269000 Phaseolus vulgaris HOM05D005663 ORTHO05D007258 2.0e-06 57.8 215 25.1
VMungo0251G2076 Vigna mungo HOM05D005663 ORTHO05D007258 2.6e-06 57.4 215 24.7
Migut.N01039 Erythranthe guttata HOM05D003483 ORTHO05D004101 3.5e-06 57.0 186 25.3
arahy.Tifrunner.gnm1.ann1.021TT5 Arachis hypogaea HOM05D003483 ORTHO05D004101 4.5e-06 56.6 175 25.1
TPR.G2131 Trifolium pratense HOM05D003483 ORTHO05D004101 4.5e-06 56.6 178 24.7
MD15G1421500 Malus domestica HOM05D003483 ORTHO05D004101 5.9e-06 56.2 179 25.1
MELO3C010097.2 Cucumis melo HOM05D003483 ORTHO05D004101 7.7e-06 55.8 180 25.0
Mapoly0103s0070 Marchantia polymorpha HOM05D003483 ORTHO05D004101 7.7e-06 55.8 72 38.9
Sabra01G0161900 Salix brachista HOM05D003483 ORTHO05D004101 7.7e-06 55.8 177 23.7


User provided reference genes

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