Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g37703 Chara braunii HOM05D011343 ORTHO05D016526 0.0e+00 4313.1 2193 100.0
AagrBONN_evm.TU.Sc2ySwM_228.193 Anthoceros agrestis HOM05D011343 ORTHO05D016526 0.0e+00 1419.8 2297 37.7
Mapoly0060s0082 Marchantia polymorpha HOM05D011343 ORTHO05D016526 0.0e+00 1415.6 2309 37.3
Pp3c2_7460 Physcomitrium patens HOM05D011343 ORTHO05D016526 0.0e+00 1313.9 2323 35.6
Pp3c1_31160 Physcomitrium patens HOM05D011343 ORTHO05D016526 0.0e+00 1271.9 2319 34.8
Pp3c3_16200 Physcomitrium patens HOM05D011343 ORTHO05D016526 0.0e+00 1114.0 2301 33.6
Pp3c12_5580 Physcomitrium patens HOM05D011343 ORTHO05D016526 0.0e+00 1086.2 2316 32.8
SMO143G0325 Selaginella moellendorffii HOM05D011343 ORTHO05D016526 3.0e-262 910.2 2298 29.8
SEGI_29173 Sequoiadendron giganteum HOM05D011343 ORTHO05D016526 4.6e-194 683.7 1416 32.0
SEGI_06827 Sequoiadendron giganteum HOM05D011343 ORTHO05D016526 5.4e-86 324.7 866 29.2
SEGI_34609 Sequoiadendron giganteum HOM05D011343 ORTHO05D384342 4.3e-59 235.3 289 41.5
Mapoly0043s0138 Marchantia polymorpha HOM05D003720 ORTHO05D005312 1.0e-15 91.3 244 28.3
SMO358G0126 Selaginella moellendorffii HOM05D003720 ORTHO05D005312 2.3e-15 90.1 238 28.2
PRCOL_00006435 Prasinoderma coloniale HOM05D003720 ORTHO05D005312 8.6e-15 88.2 219 31.1
Pp3c13_3460 Physcomitrium patens HOM05D003720 ORTHO05D005312 1.1e-14 87.8 238 27.7
AagrBONN_evm.TU.Sc2ySwM_368.1081 Anthoceros agrestis HOM05D003720 ORTHO05D005312 1.9e-14 87.0 238 27.3
Sabra18G0064000 Salix brachista HOM05D003720 ORTHO05D005312 3.3e-14 86.3 232 25.9
Actinidia26424 Actinidia chinensis HOM05D003720 ORTHO05D005312 5.5e-14 85.5 232 26.7
HanXRQChr10g0317421 Helianthus annuus HOM05D003720 ORTHO05D005312 5.5e-14 85.5 232 25.9
vmacro06189 Vaccinium macrocarpon HOM05D003720 ORTHO05D005312 5.5e-14 85.5 232 26.3
Actinidia07451 Actinidia chinensis HOM05D003720 ORTHO05D005312 7.2e-14 85.1 232 26.3
Nitab4.5_0002116g0040 Nicotiana tabacum HOM05D003720 ORTHO05D005312 7.2e-14 85.1 232 25.9
Potri.018G072600 Populus trichocarpa HOM05D003720 ORTHO05D005312 7.2e-14 85.1 233 26.6
Hund12707 Selenicereus undatus HOM05D003720 ORTHO05D005312 7.2e-14 85.1 238 26.9
ATR0561G176 Amborella trichopoda HOM05D003720 ORTHO05D005312 9.5e-14 84.7 232 25.9
CARHR119040 Cardamine hirsuta HOM05D003720 ORTHO05D005312 9.5e-14 84.7 233 26.6
Os10g0575200 Oryza sativa ssp. japonica HOM05D003720 ORTHO05D005312 9.5e-14 84.7 238 26.9
SEGI_35777 Sequoiadendron giganteum HOM05D003720 ORTHO05D005312 9.5e-14 84.7 232 27.6
TAR383G0813 Trochodendron aralioides HOM05D003720 ORTHO05D005312 9.5e-14 84.7 238 26.9
Aa31LG5G8890 Aethionema arabicum HOM05D003720 ORTHO05D005312 1.2e-13 84.3 233 27.5
PGR102G1985 Punica granatum HOM05D003720 ORTHO05D005312 1.2e-13 84.3 232 25.9
PGSC0003DMG400013949 Solanum tuberosum HOM05D003720 ORTHO05D005312 1.6e-13 84.0 232 25.9
Rhsim03G0245400 Rhododendron simsii HOM05D003720 ORTHO05D005312 2.1e-13 83.6 232 25.9
Atru.chr7.1286 Acer truncatum HOM05D003720 ORTHO05D005312 2.8e-13 83.2 232 25.9
Cc06_g09260 Coffea canephora HOM05D003720 ORTHO05D005312 2.8e-13 83.2 232 25.9
Eucgr.C04138 Eucalyptus grandis HOM05D003720 ORTHO05D005312 2.8e-13 83.2 232 25.9
Lj4g0009521 Lotus japonicus HOM05D003720 ORTHO05D005312 2.8e-13 83.2 232 25.9
Oeu002223.1 Olea europaea HOM05D003720 ORTHO05D005312 2.8e-13 83.2 232 25.4
Prupe.7G234400 Prunus persica HOM05D003720 ORTHO05D005312 2.8e-13 83.2 232 25.9
QL02p086231 Quercus lobata HOM05D003720 ORTHO05D005312 2.8e-13 83.2 238 26.1
Sopen08g011820 Solanum pennellii HOM05D003720 ORTHO05D005312 2.8e-13 83.2 236 25.8
TAR626G1854 Trochodendron aralioides HOM05D003720 ORTHO05D005312 2.8e-13 83.2 238 26.1
Manes.03G068200 Manihot esculenta HOM05D003720 ORTHO05D005312 3.6e-13 82.8 232 25.4
GSVIVG01015442001 Vitis vinifera HOM05D003720 ORTHO05D005312 3.6e-13 82.8 232 25.4
CSS0011692 Camellia sinensis var. sinensis HOM05D003720 ORTHO05D005312 4.7e-13 82.4 232 25.4
CSS0041174 Camellia sinensis var. sinensis HOM05D003720 ORTHO05D005312 4.7e-13 82.4 232 25.4
Dinv36598 Davidia involucrata HOM05D003720 ORTHO05D005312 4.7e-13 82.4 232 25.0
Hma1.2p1_0245F.1_g101400 Hydrangea macrophylla HOM05D003720 ORTHO05D005312 4.7e-13 82.4 233 26.2
Nn8g39280 Nelumbo nucifera HOM05D003720 ORTHO05D005312 4.7e-13 82.4 232 25.9
PSO357G0216 Papaver somniferum HOM05D003720 ORTHO05D005312 4.7e-13 82.4 238 25.6
Pp3c4_24650 Physcomitrium patens HOM05D003720 ORTHO05D005312 4.7e-13 82.4 238 26.5
Thecc.09G115700 Theobroma cacao HOM05D003720 ORTHO05D005312 4.7e-13 82.4 232 25.4
AL4G20110 Arabidopsis lyrata HOM05D003720 ORTHO05D005312 6.1e-13 82.0 233 26.6
Carub.0004s0739 Capsella rubella HOM05D003720 ORTHO05D005312 6.1e-13 82.0 233 26.6
FAN28G0537 Fragaria x ananassa HOM05D003720 ORTHO05D005312 6.1e-13 82.0 237 26.6
Gohir.D06G058501 Gossypium hirsutum HOM05D003720 ORTHO05D005312 6.1e-13 82.0 232 25.9
Gorai.010G068600 Gossypium raimondii HOM05D003720 ORTHO05D005312 6.1e-13 82.0 232 25.9
PSO170G5328 Papaver somniferum HOM05D003720 ORTHO05D005312 6.1e-13 82.0 238 25.6
RcHm_v2.0_Chr2g0089861 Rosa chinensis HOM05D003720 ORTHO05D005312 6.1e-13 82.0 236 25.4
Sc08g0004790 Simmondsia chinensis HOM05D003720 ORTHO05D005312 6.1e-13 82.0 238 25.6
CiPaw.03G235900 Carya illinoinensis HOM05D003720 ORTHO05D005312 8.0e-13 81.6 232 25.9
DCAR_028737 Daucus carota HOM05D003720 ORTHO05D005312 8.0e-13 81.6 233 25.8
Psat4g042800 Pisum sativum HOM05D003720 ORTHO05D005312 8.0e-13 81.6 232 25.4
Solyc08g021920.4 Solanum lycopersicum HOM05D003720 ORTHO05D005312 8.0e-13 81.6 236 25.4
TWI63G0927 Tripterygium wilfordii HOM05D003720 ORTHO05D005312 8.0e-13 81.6 238 25.2
Duzib168G1140 Durio zibethinus HOM05D003720 ORTHO05D005312 1.0e-12 81.3 232 25.9
FvH4_1g04290 Fragaria vesca HOM05D003720 ORTHO05D005312 1.0e-12 81.3 236 25.4
FAN19G2601 Fragaria x ananassa HOM05D003720 ORTHO05D005312 1.0e-12 81.3 236 25.4
FAN26G1450 Fragaria x ananassa HOM05D003720 ORTHO05D005312 1.0e-12 81.3 236 25.4
CAN.G368.4 Capsicum annuum HOM05D003720 ORTHO05D005312 1.4e-12 80.9 232 25.0
Ca_02544_v3 Cicer arietinum L. HOM05D003720 ORTHO05D005312 1.4e-12 80.9 232 25.4
ECA234G2971 Erigeron canadensis HOM05D003720 ORTHO05D005312 1.4e-12 80.9 232 25.4
Lalb_Chr12g0197621 Lupinus albus HOM05D003720 ORTHO05D005312 1.4e-12 80.9 233 26.2
MD02G1042600 Malus domestica HOM05D003720 ORTHO05D005312 1.4e-12 80.9 232 25.4
TPR.G26776 Trifolium pratense HOM05D003720 ORTHO05D005312 1.4e-12 80.9 232 25.4
VMungo1215G1596 Vigna mungo HOM05D003720 ORTHO05D005312 1.4e-12 80.9 232 25.4
Aqoxy7G01852 Aquilegia oxysepala HOM05D003720 ORTHO05D005312 1.8e-12 80.5 238 25.2
AT2G26890 Arabidopsis thaliana HOM05D003720 ORTHO05D005312 1.8e-12 80.5 233 26.2
Ciclev10007224m.g Citrus clementina HOM05D003720 ORTHO05D005312 1.8e-12 80.5 232 25.0
Gohir.A06G060200 Gossypium hirsutum HOM05D003720 ORTHO05D005312 1.8e-12 80.5 232 25.4
Medtr4g112045 Medicago truncatula HOM05D003720 ORTHO05D005312 1.8e-12 80.5 232 25.4
Peaxi162Scf00256g00817 Petunia axillaris HOM05D003720 ORTHO05D005312 1.8e-12 80.5 574 22.1
Zm00001eb390320 Zea mays HOM05D003720 ORTHO05D005312 1.8e-12 80.5 232 26.7
arahy.Tifrunner.gnm1.ann1.S8F21X Arachis hypogaea HOM05D003720 ORTHO05D005312 2.3e-12 80.1 232 25.0
MSTRG.6069 Avicennia marina HOM05D003720 ORTHO05D005312 2.3e-12 80.1 238 25.6
BraA07t29508Z Brassica rapa HOM05D003720 ORTHO05D005312 2.3e-12 80.1 233 25.8
SalBow6G2056 Salvia bowleyana HOM05D003720 ORTHO05D005312 2.3e-12 80.1 233 26.6
Thhalv10001876m.g Eutrema salsugineum HOM05D003720 ORTHO05D005312 3.0e-12 79.7 233 26.2
Glyma.05G012400 Glycine max HOM05D003720 ORTHO05D005312 3.0e-12 79.7 232 25.0
Nitab4.5_0000100g0300 Nicotiana tabacum HOM05D003720 ORTHO05D005312 3.0e-12 79.7 875 20.7
THA.LOC104809021 Tarenaya hassleriana HOM05D003720 ORTHO05D005312 3.0e-12 79.7 237 26.2
CANSAT56G4488 Cannabis sativa HOM05D003720 ORTHO05D005312 4.0e-12 79.3 233 25.8
AUR62031297 Chenopodium quinoa HOM05D003720 ORTHO05D005312 4.0e-12 79.3 238 25.2
Dinv41570 Davidia involucrata HOM05D003720 ORTHO05D005312 4.0e-12 79.3 232 25.0
Glyma.17G120500 Glycine max HOM05D003720 ORTHO05D005312 5.2e-12 79.0 232 25.0
MD15G1181200 Malus domestica HOM05D003720 ORTHO05D005312 5.2e-12 79.0 236 25.0
SGA_v2.0_scaffold45G17079 Striga asiatica HOM05D003720 ORTHO05D005312 5.2e-12 79.0 233 26.2
CBR_g4479 Chara braunii HOM05D003720 ORTHO05D005312 6.8e-12 78.6 279 26.2
AUR62027382 Chenopodium quinoa HOM05D003720 ORTHO05D005312 6.8e-12 78.6 238 25.2
Manes.16G064500 Manihot esculenta HOM05D003720 ORTHO05D005312 6.8e-12 78.6 232 24.6
A07p17900 Brassica napus HOM05D003720 ORTHO05D005312 8.9e-12 78.2 233 25.3
C04p24570 Brassica napus HOM05D003720 ORTHO05D005312 8.9e-12 78.2 233 25.3
BolC4t23961H Brassica oleracea HOM05D003720 ORTHO05D005312 8.9e-12 78.2 233 25.3
Phvul.003G176300 Phaseolus vulgaris HOM05D003720 ORTHO05D005312 8.9e-12 78.2 232 24.6
Cfa003295 Carpinus fangiana HOM05D003720 ORTHO05D005312 1.2e-11 77.8 232 25.0
Haze_25676 Corylus avellana HOM05D003720 ORTHO05D005312 1.2e-11 77.8 232 25.0
Lsat_1_v5_gn_5_99761 Lactuca sativa HOM05D003720 ORTHO05D005312 1.2e-11 77.8 232 24.6
arahy.Tifrunner.gnm1.ann1.F3YJTF Arachis hypogaea HOM05D003720 ORTHO05D005312 2.0e-11 77.0 223 25.1
MELO3C025310.2 Cucumis melo HOM05D003720 ORTHO05D005312 2.0e-11 77.0 233 25.8
HPP92_014850 Vanilla planifolia HOM05D003720 ORTHO05D005312 2.0e-11 77.0 238 26.5
Gorai.009G022700 Gossypium raimondii HOM05D003720 ORTHO05D005312 2.6e-11 76.6 232 25.4
ClCG06G010450 Citrullus lanatus HOM05D003720 ORTHO05D005312 3.4e-11 76.3 233 25.3
CsaV3_1G030910 Cucumis sativus L. HOM05D003720 ORTHO05D005312 3.4e-11 76.3 233 25.3
Gohir.A05G021000 Gossypium hirsutum HOM05D003720 ORTHO05D005312 3.4e-11 76.3 527 22.4
Lalb_Chr13g0302281 Lupinus albus HOM05D003720 ORTHO05D005312 4.4e-11 75.9 232 24.6
Sed0024242 Sechium edule HOM05D003720 ORTHO05D005312 4.4e-11 75.9 232 24.6
BcaC02g10846 Brassica carinata HOM05D003720 ORTHO05D005312 7.5e-11 75.1 224 25.4
SHI03184 Sapria himalayana HOM05D003720 ORTHO05D005312 1.7e-10 73.9 196 27.0
Sp4g08590 Schrenkiella parvula HOM05D003720 ORTHO05D005312 2.2e-10 73.6 233 24.9
Cpa.g.sc23.156 Carica papaya HOM05D003720 ORTHO05D005312 3.7e-10 72.8 197 26.9
Migut.J01184 Erythranthe guttata HOM05D003720 ORTHO05D005312 6.3e-10 72.0 233 24.0
EL10Ac8g19346 Beta vulgaris HOM05D003720 ORTHO05D005312 1.1e-09 71.2 202 26.7
SEGI_22943 Sequoiadendron giganteum HOM05D011343 ORTHO05D385027 3.2e-09 69.7 114 36.8
Lj7C641G5 Lonicera japonica HOM05D003720 ORTHO05D005312 1.2e-08 67.8 266 22.2
SEGI_21654 Sequoiadendron giganteum HOM05D011343 ORTHO05D006175 7.8e-08 65.1 121 28.9
Gohir.D05G022400 Gossypium hirsutum HOM05D003720 ORTHO05D005312 5.6e-06 58.9 590 21.0
unitig_22.g6632 Utricularia gibba HOM05D003720 ORTHO05D005312 9.5e-06 58.2 180 25.0


User provided reference genes

Program Settings