Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g37538 Chara braunii HOM05D005260 ORTHO05D006390 1.1e-167 593.2 304 100.0
MCO05G557 Micromonas commoda HOM05D005260 ORTHO05D006390 2.8e-25 120.2 311 31.2
CiPaw.15G174600 Carya illinoinensis HOM05D005260 ORTHO05D006390 2.6e-10 70.5 237 24.9
Cre17.g715950 Chlamydomonas reinhardtii HOM05D005260 ORTHO05D006390 5.7e-10 69.3 296 29.1
QL02p092738 Quercus lobata HOM05D005260 ORTHO05D006390 9.7e-10 68.6 243 25.5
Haze_19232 Corylus avellana HOM05D005260 ORTHO05D006390 3.7e-09 66.6 258 24.8
Medtr4g131190 Medicago truncatula HOM05D005260 ORTHO05D006390 3.7e-09 66.6 294 23.5
ATR0739G050 Amborella trichopoda HOM05D005260 ORTHO05D006390 1.1e-08 65.1 292 24.3
Hma1.2p1_0028F.1_g017400 Hydrangea macrophylla HOM05D005260 ORTHO05D006390 1.4e-08 64.7 273 23.1
Glyma.02G202400 Glycine max HOM05D005260 ORTHO05D006390 1.8e-08 64.3 247 24.7
Cfa020845 Carpinus fangiana HOM05D005260 ORTHO05D006390 2.4e-08 63.9 258 24.0
MBI14_g37102_MAGBIO Magnolia biondii HOM05D005260 ORTHO05D006390 2.4e-08 63.9 255 25.1
Psat4g008640 Pisum sativum HOM05D005260 ORTHO05D006390 2.4e-08 63.9 247 23.5
TPR.G9269 Trifolium pratense HOM05D005260 ORTHO05D006390 2.4e-08 63.9 247 23.9
CSS0012073 Camellia sinensis var. sinensis HOM05D005260 ORTHO05D006390 3.1e-08 63.5 253 23.3
Gohir.D13G191100 Gossypium hirsutum HOM05D005260 ORTHO05D006390 4.1e-08 63.2 253 24.9
Gorai.013G217000 Gossypium raimondii HOM05D005260 ORTHO05D006390 4.1e-08 63.2 253 24.9
TAR625G1225 Trochodendron aralioides HOM05D005260 ORTHO05D006390 4.1e-08 63.2 253 24.1
Duzib150G0891 Durio zibethinus HOM05D005260 ORTHO05D006390 5.3e-08 62.8 253 22.9
Oeu050475.1 Olea europaea HOM05D005260 ORTHO05D006390 5.3e-08 62.8 90 33.3
RhsimUnG0040000 Rhododendron simsii HOM05D005260 ORTHO05D006390 5.3e-08 62.8 281 22.8
GSVIVG01023592001 Vitis vinifera HOM05D005260 ORTHO05D006390 5.3e-08 62.8 89 37.1
FAN23G1120 Fragaria x ananassa HOM05D005260 ORTHO05D006390 7.0e-08 62.4 81 39.5
FAN26G1108 Fragaria x ananassa HOM05D005260 ORTHO05D006390 7.0e-08 62.4 81 39.5
Rhsim01G0036000 Rhododendron simsii HOM05D005260 ORTHO05D006390 7.0e-08 62.4 267 24.7
DCAR_020883 Daucus carota HOM05D005260 ORTHO05D006390 9.1e-08 62.0 247 23.1
FAN19G1826 Fragaria x ananassa HOM05D005260 ORTHO05D006390 9.1e-08 62.0 81 39.5
Glyma.17G075400 Glycine max HOM05D005260 ORTHO05D006390 9.1e-08 62.0 247 23.9
Lj4g0015138 Lotus japonicus HOM05D005260 ORTHO05D006390 9.1e-08 62.0 293 22.5
Thhalv10013961m.g Eutrema salsugineum HOM05D005260 ORTHO05D006390 1.2e-07 61.6 278 24.1
Gohir.A13G184700 Gossypium hirsutum HOM05D005260 ORTHO05D006390 1.2e-07 61.6 253 24.5
Lalb_Chr13g0300941 Lupinus albus HOM05D005260 ORTHO05D006390 1.2e-07 61.6 296 22.6
Oeu051690.1 Olea europaea HOM05D005260 ORTHO05D006390 1.2e-07 61.6 98 32.7
RcHm_v2.0_Chr2g0085941 Rosa chinensis HOM05D005260 ORTHO05D006390 1.2e-07 61.6 83 36.1
Cpa.g.sc46.130 Carica papaya HOM05D005260 ORTHO05D006390 1.6e-07 61.2 269 23.4
CsaV3_1G028770 Cucumis sativus L. HOM05D005260 ORTHO05D006390 1.6e-07 61.2 276 23.6
ClCG06G015480 Citrullus lanatus HOM05D005260 ORTHO05D006390 2.0e-07 60.8 276 23.6
Rhsim01G0045600 Rhododendron simsii HOM05D005260 ORTHO05D006390 2.0e-07 60.8 267 23.6
FAN28G1391 Fragaria x ananassa HOM05D005260 ORTHO05D006390 2.7e-07 60.5 81 38.3
Rhsim01G0035700 Rhododendron simsii HOM05D005260 ORTHO05D006390 2.7e-07 60.5 267 23.6
AagrBONN_evm.TU.Sc2ySwM_228.4055 Anthoceros agrestis HOM05D005260 ORTHO05D006390 3.5e-07 60.1 296 20.9
Gorai.006G273400 Gossypium raimondii HOM05D005260 ORTHO05D006390 3.5e-07 60.1 85 37.6
Potri.006G186900 Populus trichocarpa HOM05D005260 ORTHO05D006390 3.5e-07 60.1 246 22.8
Prupe.7G260500 Prunus persica HOM05D005260 ORTHO05D006390 3.5e-07 60.1 81 39.5
AL8G34120 Arabidopsis lyrata HOM05D005260 ORTHO05D006390 4.5e-07 59.7 275 23.6
MELO3C010238.2 Cucumis melo HOM05D005260 ORTHO05D006390 4.5e-07 59.7 276 23.2
Sed0012515 Sechium edule HOM05D005260 ORTHO05D006390 4.5e-07 59.7 229 23.1
Sopen07g001450 Solanum pennellii HOM05D005260 ORTHO05D006390 4.5e-07 59.7 260 24.6
EL10Ac8g18850 Beta vulgaris HOM05D005260 ORTHO05D006390 5.9e-07 59.3 83 37.3
FvH4_1g01150 Fragaria vesca HOM05D005260 ORTHO05D006390 5.9e-07 59.3 78 38.5
PGR102G1636 Punica granatum HOM05D005260 ORTHO05D006390 5.9e-07 59.3 302 22.2
TWI34G1822 Tripterygium wilfordii HOM05D005260 ORTHO05D006390 5.9e-07 59.3 314 22.0
Aa31LG3G13860 Aethionema arabicum HOM05D005260 ORTHO05D006390 7.7e-07 58.9 309 23.0
AT5G58020 Arabidopsis thaliana HOM05D005260 ORTHO05D006390 7.7e-07 58.9 93 35.5
Ciclev10008691m.g Citrus clementina HOM05D005260 ORTHO05D006390 7.7e-07 58.9 92 35.9
SHI04751 Sapria himalayana HOM05D005260 ORTHO05D006390 7.7e-07 58.9 86 38.4
Thecc.09G033300 Theobroma cacao HOM05D005260 ORTHO05D006390 7.7e-07 58.9 253 23.3
TAR383G0874 Trochodendron aralioides HOM05D005260 ORTHO05D006390 7.7e-07 58.9 273 23.1
THA.LOC104817828 Tarenaya hassleriana HOM05D005260 ORTHO05D006390 1.0e-06 58.5 94 31.9
Atru.chr6.1391 Acer truncatum HOM05D005260 ORTHO05D006390 1.3e-06 58.2 89 40.4
Atru.chr7.58 Acer truncatum HOM05D005260 ORTHO05D006390 1.3e-06 58.2 89 40.4
Actinidia04287 Actinidia chinensis HOM05D005260 ORTHO05D006390 1.3e-06 58.2 261 22.6
Nitab4.5_0008157g0020 Nicotiana tabacum HOM05D005260 ORTHO05D006390 1.3e-06 58.2 297 23.2
AUR62031434 Chenopodium quinoa HOM05D005260 ORTHO05D006390 1.7e-06 57.8 89 34.8
Potri.018G109800 Populus trichocarpa HOM05D005260 ORTHO05D006390 1.7e-06 57.8 241 22.4
Solyc07g005340.2 Solanum lycopersicum HOM05D005260 ORTHO05D006390 1.7e-06 57.8 253 24.1
THA.LOC104817826 Tarenaya hassleriana HOM05D005260 ORTHO05D006390 1.7e-06 57.8 83 34.9
Ca_21113_v3 Cicer arietinum L. HOM05D005260 ORTHO05D006390 2.2e-06 57.4 81 38.3
Duzib168G1964 Durio zibethinus HOM05D005260 ORTHO05D006390 2.2e-06 57.4 253 22.1
Dinv42879 Davidia involucrata HOM05D005260 ORTHO05D006390 2.9e-06 57.0 87 35.6
Dinv43221 Davidia involucrata HOM05D005260 ORTHO05D006390 2.9e-06 57.0 87 35.6
ECA233G0390 Erigeron canadensis HOM05D005260 ORTHO05D006390 2.9e-06 57.0 237 21.1
Eucgr.C02595 Eucalyptus grandis HOM05D005260 ORTHO05D006390 2.9e-06 57.0 301 21.9
MD15G1155100 Malus domestica HOM05D005260 ORTHO05D006390 2.9e-06 57.0 83 33.7
Nitab4.5_0001201g0060 Nicotiana tabacum HOM05D005260 ORTHO05D006390 2.9e-06 57.0 84 36.9
CARHR271830 Cardamine hirsuta HOM05D005260 ORTHO05D006390 3.8e-06 56.6 93 34.4
Os06g0183900 Oryza sativa ssp. japonica HOM05D005260 ORTHO05D006390 3.8e-06 56.6 296 23.3
COL.COLO4_18779 Corchorus olitorius HOM05D005260 ORTHO05D006390 5.0e-06 56.2 81 37.0
Sp6g19700 Schrenkiella parvula HOM05D005260 ORTHO05D006390 5.0e-06 56.2 97 32.0
Ah.11g045050 Amaranthus hybridus HOM05D005260 ORTHO05D006390 6.5e-06 55.8 281 23.1
CBR_g44540 Chara braunii HOM05D005260 ORTHO05D006390 6.5e-06 55.8 230 22.6
PGSC0003DMG400003180 Solanum tuberosum HOM05D005260 ORTHO05D006390 6.5e-06 55.8 260 24.2
Carub.0008s1857 Capsella rubella HOM05D005260 ORTHO05D006390 8.5e-06 55.5 93 33.3
CAN.G1116.9 Capsicum annuum HOM05D005260 ORTHO05D006390 8.5e-06 55.5 85 37.6
Phvul.003G157300 Phaseolus vulgaris HOM05D005260 ORTHO05D006390 8.5e-06 55.5 247 23.1
SGA_v2.0_scaffold265G46122 Striga asiatica HOM05D005260 ORTHO05D006390 8.5e-06 55.5 86 36.0


User provided reference genes

Program Settings