Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g37523 Chara braunii HOM05D005102 ORTHO05D006090 5.2e-126 454.5 249 100.0
SEGI_01035 Sequoiadendron giganteum HOM05D005102 ORTHO05D006090 8.7e-41 171.4 231 45.0
Os02g0658900 Oryza sativa ssp. japonica HOM05D005102 ORTHO05D006090 7.4e-40 168.3 229 46.3
AagrBONN_evm.TU.Sc2ySwM_368.1701 Anthoceros agrestis HOM05D005102 ORTHO05D006090 1.3e-39 167.5 231 44.6
AagrBONN_evm.TU.Sc2ySwM_228.1541 Anthoceros agrestis HOM05D005102 ORTHO05D006090 1.6e-39 167.2 231 44.6
ATR0787G185 Amborella trichopoda HOM05D005102 ORTHO05D006090 2.8e-39 166.4 232 44.8
Glyma.09G019100 Glycine max HOM05D005102 ORTHO05D006090 2.8e-39 166.4 230 46.5
Glyma.15G125200 Glycine max HOM05D005102 ORTHO05D006090 6.3e-39 165.2 230 46.5
Actinidia37761 Actinidia chinensis HOM05D005102 ORTHO05D006090 1.8e-38 163.7 242 44.2
COL.COLO4_15983 Corchorus olitorius HOM05D005102 ORTHO05D006090 1.8e-38 163.7 230 44.3
Phvul.006G133300 Phaseolus vulgaris HOM05D005102 ORTHO05D006090 2.4e-38 163.3 230 45.2
Manes.03G102500 Manihot esculenta HOM05D005102 ORTHO05D006090 3.1e-38 162.9 232 45.3
Nn3g19843 Nelumbo nucifera HOM05D005102 ORTHO05D006090 5.3e-38 162.2 230 44.8
TPR.G17506 Trifolium pratense HOM05D005102 ORTHO05D006090 6.9e-38 161.8 230 43.9
THA.LOC104810405 Tarenaya hassleriana HOM05D005102 ORTHO05D006090 9.0e-38 161.4 231 44.6
Psat7g046400 Pisum sativum HOM05D005102 ORTHO05D006090 1.5e-37 160.6 230 43.9
HPP92_021768 Vanilla planifolia HOM05D005102 ORTHO05D006090 1.5e-37 160.6 222 45.0
Lj3g0001784 Lotus japonicus HOM05D005102 ORTHO05D006090 5.9e-37 158.7 230 45.2
Psat1g170520 Pisum sativum HOM05D005102 ORTHO05D006090 5.9e-37 158.7 230 43.9
TWI09G0526 Tripterygium wilfordii HOM05D005102 ORTHO05D006090 5.9e-37 158.7 191 49.7
VMungo0540G0767 Vigna mungo HOM05D005102 ORTHO05D006090 5.9e-37 158.7 230 44.3
CDE09G0962 Ceratophyllum demersum HOM05D005102 ORTHO05D006090 7.6e-37 158.3 230 43.0
Lj6g0009036 Lotus japonicus HOM05D005102 ORTHO05D006090 7.6e-37 158.3 230 45.2
CAN.G812.17 Capsicum annuum HOM05D005102 ORTHO05D006090 1.3e-36 157.5 191 49.7
Zm00001eb238020 Zea mays HOM05D005102 ORTHO05D006090 1.3e-36 157.5 230 43.9
Dinv27121 Davidia involucrata HOM05D005102 ORTHO05D006090 1.7e-36 157.1 241 42.7
THA.LOC104808740 Tarenaya hassleriana HOM05D005102 ORTHO05D006090 2.2e-36 156.8 231 43.7
CDE02G3615 Ceratophyllum demersum HOM05D005102 ORTHO05D006090 2.9e-36 156.4 234 41.9
QL06p021548 Quercus lobata HOM05D005102 ORTHO05D006090 2.9e-36 156.4 228 43.9
Sopen09g033820 Solanum pennellii HOM05D005102 ORTHO05D006090 2.9e-36 156.4 191 48.7
Eucgr.K00416 Eucalyptus grandis HOM05D005102 ORTHO05D006090 3.8e-36 156.0 191 48.7
Carub.0003s2465 Capsella rubella HOM05D005102 ORTHO05D006090 5.0e-36 155.6 234 43.6
Solyc09g090860.4 Solanum lycopersicum HOM05D005102 ORTHO05D006090 5.0e-36 155.6 191 48.7
CARHR100410 Cardamine hirsuta HOM05D005102 ORTHO05D006090 6.5e-36 155.2 232 41.8
QL08p018871 Quercus lobata HOM05D005102 ORTHO05D006090 6.5e-36 155.2 228 42.5
EL10Ac3g06678 Beta vulgaris HOM05D005102 ORTHO05D006090 8.5e-36 154.8 229 44.5
Cfa014795 Carpinus fangiana HOM05D005102 ORTHO05D006090 8.5e-36 154.8 229 44.1
DCAR_030764 Daucus carota HOM05D005102 ORTHO05D006090 8.5e-36 154.8 191 49.2
AT3G24315 Arabidopsis thaliana HOM05D005102 ORTHO05D006090 1.1e-35 154.5 233 42.9
HanXRQChr01g0011201 Helianthus annuus HOM05D005102 ORTHO05D006090 1.1e-35 154.5 222 44.1
Nitab4.5_0001041g0140 Nicotiana tabacum HOM05D005102 ORTHO05D006090 1.1e-35 154.5 220 45.5
Aqoxy5G00133 Aquilegia oxysepala HOM05D005102 ORTHO05D006090 1.4e-35 154.1 234 44.0
AUR62018036 Chenopodium quinoa HOM05D005102 ORTHO05D006090 1.4e-35 154.1 229 43.7
Thecc.04G266700 Theobroma cacao HOM05D005102 ORTHO05D006090 1.9e-35 153.7 230 43.5
Ca_11361_v3 Cicer arietinum L. HOM05D005102 ORTHO05D006090 2.5e-35 153.3 230 42.2
Haze_11479 Corylus avellana HOM05D005102 ORTHO05D006090 2.5e-35 153.3 229 44.1
Duzib052G0859 Durio zibethinus HOM05D005102 ORTHO05D006090 2.5e-35 153.3 230 43.5
Thhalv10002630m.g Eutrema salsugineum HOM05D005102 ORTHO05D006090 2.5e-35 153.3 230 41.7
Gorai.005G054400 Gossypium raimondii HOM05D005102 ORTHO05D006090 2.5e-35 153.3 230 41.7
Ciclev10005541m.g Citrus clementina HOM05D005102 ORTHO05D006090 3.2e-35 152.9 241 40.7
SMO364G0891 Selaginella moellendorffii HOM05D005102 ORTHO05D006090 3.2e-35 152.9 181 50.8
Gohir.A02G043600 Gossypium hirsutum HOM05D005102 ORTHO05D006090 5.5e-35 152.1 230 42.2
Aa31LG8G11040 Aethionema arabicum HOM05D005102 ORTHO05D006090 9.4e-35 151.4 230 41.3
Sp3g22120 Schrenkiella parvula HOM05D005102 ORTHO05D006090 1.2e-34 151.0 233 42.1
AL3G39760 Arabidopsis lyrata HOM05D005102 ORTHO05D006090 1.6e-34 150.6 230 42.2
Mapoly0019s0137 Marchantia polymorpha HOM05D005102 ORTHO05D006090 1.6e-34 150.6 203 44.8
Potri.010G064900 Populus trichocarpa HOM05D005102 ORTHO05D006090 2.1e-34 150.2 241 41.5
Lsat_1_v5_gn_1_75501 Lactuca sativa HOM05D005102 ORTHO05D006090 2.7e-34 149.8 191 48.2
PSO832G1873 Papaver somniferum HOM05D005102 ORTHO05D006090 2.7e-34 149.8 229 41.9
Medtr2g028660 Medicago truncatula HOM05D005102 ORTHO05D006090 3.6e-34 149.4 248 41.5
BcaC06g35682 Brassica carinata HOM05D005102 ORTHO05D006090 4.6e-34 149.1 230 42.6
C07p12060 Brassica napus HOM05D005102 ORTHO05D006090 4.6e-34 149.1 230 42.6
TAR365G0288 Trochodendron aralioides HOM05D005102 ORTHO05D006090 4.6e-34 149.1 222 44.6
Ah.10g026170 Amaranthus hybridus HOM05D005102 ORTHO05D006090 7.9e-34 148.3 230 42.2
BolC7t41674H Brassica oleracea HOM05D005102 ORTHO05D006090 1.4e-33 147.5 230 42.2
FAN13G1436 Fragaria x ananassa HOM05D005102 ORTHO05D006090 1.4e-33 147.5 230 42.6
A07p08000 Brassica napus HOM05D005102 ORTHO05D006090 1.8e-33 147.1 230 42.2
BraA07t28587Z Brassica rapa HOM05D005102 ORTHO05D006090 1.8e-33 147.1 230 42.2
Migut.G00562 Erythranthe guttata HOM05D005102 ORTHO05D006090 2.3e-33 146.7 191 48.2
BcaB06g26613 Brassica carinata HOM05D005102 ORTHO05D006090 3.0e-33 146.4 230 42.2
arahy.Tifrunner.gnm1.ann1.Z186RR Arachis hypogaea HOM05D005102 ORTHO05D006090 3.9e-33 146.0 261 41.0
FAN08G3625 Fragaria x ananassa HOM05D005102 ORTHO05D006090 5.1e-33 145.6 230 42.2
PSO764G0108 Papaver somniferum HOM05D005102 ORTHO05D006090 1.1e-32 144.4 231 41.1
Sed0020820 Sechium edule HOM05D005102 ORTHO05D006090 1.1e-32 144.4 230 41.3
CiPaw.01G176900 Carya illinoinensis HOM05D005102 ORTHO05D006090 1.5e-32 144.1 229 40.6
ClCG06G002570 Citrullus lanatus HOM05D005102 ORTHO05D006090 1.5e-32 144.1 230 42.2
Cc03_g06480 Coffea canephora HOM05D005102 ORTHO05D006090 1.5e-32 144.1 191 46.1
FAN04G2658 Fragaria x ananassa HOM05D005102 ORTHO05D006090 1.5e-32 144.1 230 41.7
CSS0019941 Camellia sinensis var. sinensis HOM05D005102 ORTHO05D006090 3.3e-32 142.9 244 44.7
CSS0043447 Camellia sinensis var. sinensis HOM05D005102 ORTHO05D006090 3.3e-32 142.9 244 44.7
FAN18G4219 Fragaria x ananassa HOM05D005102 ORTHO05D006090 3.3e-32 142.9 230 41.3
Atru.chr12.1207 Acer truncatum HOM05D005102 ORTHO05D006090 4.3e-32 142.5 189 45.5
CANSAT78G2207 Cannabis sativa HOM05D005102 ORTHO05D006090 4.3e-32 142.5 235 40.0
PSO170G5569 Papaver somniferum HOM05D005102 ORTHO05D006090 4.3e-32 142.5 229 39.7
PSO302G0040 Papaver somniferum HOM05D005102 ORTHO05D006090 4.3e-32 142.5 229 39.7
Prupe.5G230500 Prunus persica HOM05D005102 ORTHO05D006090 4.3e-32 142.5 233 42.1
MD06G1229400 Malus domestica HOM05D005102 ORTHO05D006090 5.7e-32 142.1 232 40.9
C03p53630 Brassica napus HOM05D005102 ORTHO05D006090 9.7e-32 141.4 231 41.6
FvH4_5g17100 Fragaria vesca HOM05D005102 ORTHO05D006090 9.7e-32 141.4 230 40.9
BcaC01g03326 Brassica carinata HOM05D005102 ORTHO05D006090 1.3e-31 141.0 231 41.6
vmacro04848 Vaccinium macrocarpon HOM05D005102 ORTHO05D006090 1.7e-31 140.6 140 57.9
Pp3c27_3370 Physcomitrium patens HOM05D005102 ORTHO05D006090 6.3e-31 138.7 237 37.6
Sabra10G0042100 Salix brachista HOM05D005102 ORTHO05D006090 6.3e-31 138.7 241 39.4
Sc13g0003090 Simmondsia chinensis HOM05D005102 ORTHO05D006090 1.4e-30 137.5 229 41.0
Lalb_Chr06g0169571 Lupinus albus HOM05D005102 ORTHO05D006090 2.4e-30 136.7 191 45.5
SGA_v2.0_scaffold193G40717 Striga asiatica HOM05D005102 ORTHO05D006090 2.4e-30 136.7 202 44.1
Gohir.D02G049200 Gossypium hirsutum HOM05D005102 ORTHO05D006090 1.2e-29 134.4 222 40.5
Rhsim01G0226300 Rhododendron simsii HOM05D005102 ORTHO05D006090 1.2e-29 134.4 268 38.8
Nitab4.5_0005154g0050 Nicotiana tabacum HOM05D005102 ORTHO05D006090 2.0e-29 133.7 265 37.7
BolC3t17623H Brassica oleracea HOM05D005102 ORTHO05D006090 1.0e-28 131.3 239 39.7
TWI63G1490 Tripterygium wilfordii HOM05D005102 ORTHO05D006090 1.0e-28 131.3 181 44.8
A03p43600 Brassica napus HOM05D005102 ORTHO05D006090 1.7e-28 130.6 232 40.9
AUR62015240 Chenopodium quinoa HOM05D005102 ORTHO05D006090 1.7e-28 130.6 229 40.6
MSTRG.9850 Avicennia marina HOM05D005102 ORTHO05D006090 6.5e-28 128.6 191 44.5
CsaV3_6G008560 Cucumis sativus L. HOM05D005102 ORTHO05D006090 6.5e-28 128.6 230 38.7
RcHm_v2.0_Chr7g0178711 Rosa chinensis HOM05D005102 ORTHO05D006090 6.5e-28 128.6 236 37.7
GSVIVG01027934001 Vitis vinifera HOM05D005102 ORTHO05D006090 2.5e-27 126.7 201 41.8
PGSC0003DMG400001501 Solanum tuberosum HOM05D005102 ORTHO05D006090 3.9e-25 119.4 282 33.3
Hund22254 Selenicereus undatus HOM05D005102 ORTHO05D006090 1.1e-24 117.9 306 33.3
SGA_v2.0_scaffold454G51888 Striga asiatica HOM05D005102 ORTHO05D006090 1.1e-24 117.9 194 41.8
Lj6A637G59 Lonicera japonica HOM05D005102 ORTHO05D006090 9.7e-24 114.8 254 35.4
MELO3C022272.2 Cucumis melo HOM05D005102 ORTHO05D006090 1.7e-23 114.0 230 36.5
Oeu047122.2 Olea europaea HOM05D005102 ORTHO05D006090 1.7e-23 114.0 275 33.8
SGA_v2.0_scaffold127G34013 Striga asiatica HOM05D005102 ORTHO05D006090 2.8e-23 113.2 225 38.7
Cpa.g.sc59.14 Carica papaya HOM05D005102 ORTHO05D006090 6.3e-23 112.1 123 51.2
Pp3c16_3280 Physcomitrium patens HOM05D005102 ORTHO05D006090 6.3e-23 112.1 237 33.8
ECA247G3419 Erigeron canadensis HOM05D005102 ORTHO05D006090 2.9e-20 103.2 123 49.6
BraA03t13497Z Brassica rapa HOM05D005102 ORTHO05D006090 1.4e-19 100.9 118 50.0
vmacro20979 Vaccinium macrocarpon HOM05D005102 ORTHO05D006090 4.7e-18 95.9 209 37.8
Nitab4.5_0002613g0070 Nicotiana tabacum HOM05D005102 ORTHO05D006090 1.4e-17 94.4 100 53.0
Peaxi162Scf00531g00334 Petunia axillaris HOM05D005102 ORTHO05D006090 1.8e-17 94.0 166 39.2
Cre02.g090650 Chlamydomonas reinhardtii HOM05D005102 ORTHO05D006090 3.7e-15 86.3 215 28.4
SalBow2G1408 Salvia bowleyana HOM05D005102 ORTHO05D006090 4.1e-14 82.8 128 43.8
SHI00826 Sapria himalayana HOM05D005102 ORTHO05D006090 7.0e-14 82.0 250 30.0
Dinv30772 Davidia involucrata HOM05D005102 ORTHO05D006090 2.9e-12 76.6 76 56.6
Phvul.006G132800 Phaseolus vulgaris HOM05D005102 ORTHO05D006090 2.7e-10 70.1 123 39.8
Zm00001eb048840 Zea mays HOM05D005102 ORTHO05D006090 1.0e-09 68.2 161 34.8
arahy.Tifrunner.gnm1.ann1.4HQ694 Arachis hypogaea HOM05D005102 ORTHO05D006090 1.4e-09 67.8 67 53.7
Peaxi162Scf00531g00327 Petunia axillaris HOM05D000868 ORTHO05D000711 5.2e-09 65.9 65 52.3
Eucgr.G00566 Eucalyptus grandis HOM05D005102 ORTHO05D006090 6.7e-09 65.5 61 55.7
MCO03G437 Micromonas commoda HOM05D005102 ORTHO05D006090 1.5e-08 64.3 190 31.6
PRCOL_00001816 Prasinoderma coloniale HOM05D005102 ORTHO05D006090 1.5e-08 64.3 179 34.6


User provided reference genes

Program Settings