Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g3752 Chara braunii HOM05D003971 ORTHO05D004762 9.0e-195 683.3 328 100.0
AUR62041701 Chenopodium quinoa HOM05D003971 ORTHO05D004762 6.6e-89 331.6 297 52.2
AUR62041703 Chenopodium quinoa HOM05D003971 ORTHO05D004762 6.6e-89 331.6 297 52.2
AUR62009537 Chenopodium quinoa HOM05D003971 ORTHO05D004762 1.1e-88 330.9 297 51.9
EL10Ac5g11286 Beta vulgaris HOM05D003971 ORTHO05D004762 2.1e-87 326.6 297 50.5
Hund02509 Selenicereus undatus HOM05D003971 ORTHO05D004762 4.8e-87 325.5 297 50.2
TWI39G0398 Tripterygium wilfordii HOM05D003971 ORTHO05D004762 4.8e-87 325.5 297 51.5
MSTRG.22849 Avicennia marina HOM05D003971 ORTHO05D004762 6.2e-87 325.1 299 50.5
Nitab4.5_0008403g0010 Nicotiana tabacum HOM05D003971 ORTHO05D004762 1.5e-85 320.5 297 49.8
Hund10040 Selenicereus undatus HOM05D003971 ORTHO05D004762 2.0e-85 320.1 297 50.2
Migut.I00618 Erythranthe guttata HOM05D003971 ORTHO05D004762 9.9e-85 317.8 298 49.7
Mapoly0008s0248 Marchantia polymorpha HOM05D003971 ORTHO05D004762 9.9e-85 317.8 297 51.5
Zm00001eb210690 Zea mays HOM05D003971 ORTHO05D004762 1.7e-84 317.0 298 50.0
DCAR_021401 Daucus carota HOM05D003971 ORTHO05D004762 2.9e-84 316.2 298 50.0
MD06G1130900 Malus domestica HOM05D003971 ORTHO05D004762 3.8e-84 315.8 297 50.5
Oeu046606.1 Olea europaea HOM05D003971 ORTHO05D004762 3.8e-84 315.8 299 48.2
Peaxi162Scf01168g00013 Petunia axillaris HOM05D003971 ORTHO05D004762 3.8e-84 315.8 297 49.5
Zm00001eb064630 Zea mays HOM05D003971 ORTHO05D004762 3.8e-84 315.8 299 50.2
Cpa.g.sc13.168 Carica papaya HOM05D003971 ORTHO05D004762 6.4e-84 315.1 298 49.7
Cc04_g05880 Coffea canephora HOM05D003971 ORTHO05D004762 6.4e-84 315.1 298 51.3
Glyma.06G163900 Glycine max HOM05D003971 ORTHO05D004762 1.1e-83 314.3 300 51.0
PSO384G2792 Papaver somniferum HOM05D003971 ORTHO05D004762 1.1e-83 314.3 297 48.8
MD14G1147500 Malus domestica HOM05D003971 ORTHO05D004762 1.4e-83 313.9 297 50.2
Nitab4.5_0002584g0020 Nicotiana tabacum HOM05D003971 ORTHO05D004762 1.4e-83 313.9 297 49.2
Cfa018707 Carpinus fangiana HOM05D003971 ORTHO05D004762 2.4e-83 313.2 298 48.3
Actinidia18301 Actinidia chinensis HOM05D003971 ORTHO05D004762 3.2e-83 312.8 298 49.3
arahy.Tifrunner.gnm1.ann1.86AC6C Arachis hypogaea HOM05D003971 ORTHO05D004762 3.2e-83 312.8 298 51.0
Solyc12g042200.2 Solanum lycopersicum HOM05D003971 ORTHO05D004762 3.2e-83 312.8 298 49.7
Medtr3g098600 Medicago truncatula HOM05D003971 ORTHO05D004762 4.2e-83 312.4 303 49.5
arahy.Tifrunner.gnm1.ann1.9UH1TF Arachis hypogaea HOM05D003971 ORTHO05D004762 5.5e-83 312.0 301 50.5
Lj9C486T6 Lonicera japonica HOM05D003971 ORTHO05D004762 5.5e-83 312.0 300 50.0
Psat5g055040 Pisum sativum HOM05D003971 ORTHO05D004762 5.5e-83 312.0 298 50.7
FvH4_5g09480 Fragaria vesca HOM05D003971 ORTHO05D004762 7.1e-83 311.6 305 48.2
FAN04G0277 Fragaria x ananassa HOM05D003971 ORTHO05D004762 7.1e-83 311.6 305 48.2
Sopen12g021240 Solanum pennellii HOM05D003971 ORTHO05D004762 9.3e-83 311.2 298 49.7
ATR0582G269 Amborella trichopoda HOM05D003971 ORTHO05D004762 1.2e-82 310.8 301 48.2
CARHR257220 Cardamine hirsuta HOM05D003971 ORTHO05D004762 1.2e-82 310.8 301 49.8
FAN13G1049 Fragaria x ananassa HOM05D003971 ORTHO05D004762 1.2e-82 310.8 305 48.5
Thecc.03G140300 Theobroma cacao HOM05D003971 ORTHO05D004762 1.2e-82 310.8 298 49.7
Ca_10878_v3 Cicer arietinum L. HOM05D003971 ORTHO05D004762 2.1e-82 310.1 298 50.0
ClCG06G018370 Citrullus lanatus HOM05D003971 ORTHO05D004762 2.1e-82 310.1 301 48.5
FAN18G1571 Fragaria x ananassa HOM05D003971 ORTHO05D004762 2.1e-82 310.1 305 47.9
PGR083G2644 Punica granatum HOM05D003971 ORTHO05D004762 2.1e-82 310.1 298 49.7
Sabra12G0079300 Salix brachista HOM05D003971 ORTHO05D004762 2.1e-82 310.1 298 49.3
SEGI_34710 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 2.1e-82 310.1 297 51.2
THA.LOC104825039 Tarenaya hassleriana HOM05D003971 ORTHO05D004762 2.7e-82 309.7 298 49.0
C03p19320 Brassica napus HOM05D003971 ORTHO05D004762 3.5e-82 309.3 297 49.2
Phvul.009G161300 Phaseolus vulgaris HOM05D003971 ORTHO05D004762 3.5e-82 309.3 299 50.2
Atru.chr6.1916 Acer truncatum HOM05D003971 ORTHO05D004762 4.6e-82 308.9 298 49.0
BolC3t14318H Brassica oleracea HOM05D003971 ORTHO05D004762 4.6e-82 308.9 297 49.2
CiPaw.11G001000 Carya illinoinensis HOM05D003971 ORTHO05D004762 1.0e-81 307.8 298 49.7
A03p16430 Brassica napus HOM05D003971 ORTHO05D004762 1.3e-81 307.4 299 49.5
BraA03t10933Z Brassica rapa HOM05D003971 ORTHO05D004762 1.3e-81 307.4 299 49.5
Lj1g0015188 Lotus japonicus HOM05D003971 ORTHO05D004762 1.8e-81 307.0 298 49.7
vmacro19182 Vaccinium macrocarpon HOM05D003971 ORTHO05D004762 1.8e-81 307.0 299 48.2
AT5G50970 Arabidopsis thaliana HOM05D003971 ORTHO05D004762 2.3e-81 306.6 298 49.3
MBI03_g13042_MAGBIO Magnolia biondii HOM05D003971 ORTHO05D004762 2.3e-81 306.6 297 47.1
VMungo1309G0830 Vigna mungo HOM05D003971 ORTHO05D004762 2.3e-81 306.6 300 49.7
Gohir.A03G056200 Gossypium hirsutum HOM05D003971 ORTHO05D004762 3.0e-81 306.2 298 49.0
Prupe.5G142100 Prunus persica HOM05D003971 ORTHO05D004762 3.0e-81 306.2 298 50.0
CSS0040569 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 3.9e-81 305.8 298 49.7
PSO339G4968 Papaver somniferum HOM05D003971 ORTHO05D004762 3.9e-81 305.8 297 48.1
TAR622G0096 Trochodendron aralioides HOM05D003971 ORTHO05D004762 3.9e-81 305.8 298 48.3
AL8G25160 Arabidopsis lyrata HOM05D003971 ORTHO05D004762 5.1e-81 305.4 298 48.7
Thhalv10013209m.g Eutrema salsugineum HOM05D003971 ORTHO05D004762 5.1e-81 305.4 300 49.7
Aa31LG3G7450 Aethionema arabicum HOM05D003971 ORTHO05D004762 6.7e-81 305.1 266 52.6
CsaV3_1G009920 Cucumis sativus L. HOM05D003971 ORTHO05D004762 6.7e-81 305.1 298 49.3
Gohir.D03G110400 Gossypium hirsutum HOM05D003971 ORTHO05D004762 6.7e-81 305.1 298 48.7
Sp6g13140 Schrenkiella parvula HOM05D003971 ORTHO05D004762 6.7e-81 305.1 298 49.0
Sed0008211 Sechium edule HOM05D003971 ORTHO05D004762 6.7e-81 305.1 298 50.0
TWI23G0486 Tripterygium wilfordii HOM05D003971 ORTHO05D004762 6.7e-81 305.1 302 48.3
CANSAT56G1634 Cannabis sativa HOM05D003971 ORTHO05D004762 8.7e-81 304.7 298 49.7
Glyma.04G201300 Glycine max HOM05D003971 ORTHO05D004762 8.7e-81 304.7 298 49.7
Lalb_Chr11g0069181 Lupinus albus HOM05D003971 ORTHO05D004762 8.7e-81 304.7 297 50.2
Lsat_1_v5_gn_5_10121 Lactuca sativa HOM05D003971 ORTHO05D004762 1.1e-80 304.3 298 48.7
Medtr8g100180 Medicago truncatula HOM05D003971 ORTHO05D004762 1.1e-80 304.3 319 48.0
Nn4g22021 Nelumbo nucifera HOM05D003971 ORTHO05D004762 1.1e-80 304.3 298 48.3
MELO3C002386.2 Cucumis melo HOM05D003971 ORTHO05D004762 1.5e-80 303.9 298 49.3
Duzib084G0567 Durio zibethinus HOM05D003971 ORTHO05D004762 1.5e-80 303.9 298 48.3
Carub.0008s1099 Capsella rubella HOM05D003971 ORTHO05D004762 1.9e-80 303.5 298 49.0
CsaV3_1G000070 Cucumis sativus L. HOM05D003971 ORTHO05D004762 1.9e-80 303.5 298 48.0
Potri.012G108100 Populus trichocarpa HOM05D003971 ORTHO05D004762 1.9e-80 303.5 298 48.7
MELO3C026159.2 Cucumis melo HOM05D003971 ORTHO05D004762 3.3e-80 302.8 298 48.3
HanXRQChr05g0155401 Helianthus annuus HOM05D003971 ORTHO05D004762 3.3e-80 302.8 300 47.7
ClCG03G004040 Citrullus lanatus HOM05D003971 ORTHO05D004762 4.3e-80 302.4 297 49.2
ECA246G0638 Erigeron canadensis HOM05D003971 ORTHO05D004762 5.6e-80 302.0 300 47.3
TPR.G12938 Trifolium pratense HOM05D003971 ORTHO05D004762 5.6e-80 302.0 302 46.0
GSVIVG01008647001 Vitis vinifera HOM05D003971 ORTHO05D004762 5.6e-80 302.0 298 48.3
Lj5C87G6 Lonicera japonica HOM05D003971 ORTHO05D004762 7.4e-80 301.6 296 48.0
Aqoxy1G00170 Aquilegia oxysepala HOM05D003971 ORTHO05D004762 1.3e-79 300.8 298 48.3
MBI07_g41261_MAGBIO Magnolia biondii HOM05D003971 ORTHO05D004762 1.3e-79 300.8 274 49.6
Ciclev10031176m.g Citrus clementina HOM05D003971 ORTHO05D004762 2.1e-79 300.1 298 48.3
AagrBONN_evm.TU.Sc2ySwM_117.1595 Anthoceros agrestis HOM05D003971 ORTHO05D004762 2.8e-79 299.7 298 46.0
DCAR_016341 Daucus carota HOM05D003971 ORTHO05D004762 3.7e-79 299.3 297 47.5
Lj4g0027413 Lotus japonicus HOM05D003971 ORTHO05D004762 1.4e-78 297.4 301 46.8
VMungo0251G1950 Vigna mungo HOM05D000512 ORTHO05D000861 1.8e-78 297.0 297 48.5
Phvul.002G281600 Phaseolus vulgaris HOM05D003971 ORTHO05D004762 4.0e-78 295.8 300 49.7
Sed0022051 Sechium edule HOM05D003971 ORTHO05D004762 9.0e-78 294.7 298 46.6
Gohir.A07G046700 Gossypium hirsutum HOM05D003971 ORTHO05D004762 1.5e-77 293.9 298 46.3
FAN08G0744 Fragaria x ananassa HOM05D003971 ORTHO05D004762 2.6e-77 293.1 269 50.9
Rhsim08G0197300 Rhododendron simsii HOM05D003971 ORTHO05D004762 2.6e-77 293.1 273 50.5
Gohir.D07G051000 Gossypium hirsutum HOM05D003971 ORTHO05D004762 4.5e-77 292.4 298 46.0
Gorai.003G116700 Gossypium raimondii HOM05D003971 ORTHO05D004762 5.8e-77 292.0 294 47.3
SEGI_10226 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 7.6e-77 291.6 266 50.4
Peaxi162Scf00314g00638 Petunia axillaris HOM05D003971 ORTHO05D004762 1.3e-76 290.8 298 46.6
Eucgr.K00065 Eucalyptus grandis HOM05D003971 ORTHO05D004762 3.8e-76 289.3 305 45.6
Gorai.001G054100 Gossypium raimondii HOM05D003971 ORTHO05D004762 4.9e-76 288.9 298 45.6
Sabra15G0126400 Salix brachista HOM05D003971 ORTHO05D004762 4.9e-76 288.9 298 47.0
unitig_21.g20335 Utricularia gibba HOM05D003971 ORTHO05D004762 6.5e-76 288.5 311 45.0
PGSC0003DMG400014242 Solanum tuberosum HOM05D003971 ORTHO05D004762 8.4e-76 288.1 298 46.0
Pp3c11_18210 Physcomitrium patens HOM05D003971 ORTHO05D004762 1.4e-75 287.3 305 46.6
QL10p000509 Quercus lobata HOM05D003971 ORTHO05D004762 1.9e-75 287.0 268 50.0
RcHm_v2.0_Chr7g0188721 Rosa chinensis HOM05D003971 ORTHO05D004762 1.9e-75 287.0 284 48.2
Sopen03g037130 Solanum pennellii HOM05D003971 ORTHO05D004762 2.5e-75 286.6 299 45.8
BcaC01g06062 Brassica carinata HOM05D003971 ORTHO05D004762 1.6e-74 283.9 297 47.1
HPP92_028338 Vanilla planifolia HOM05D003971 ORTHO05D004762 2.7e-74 283.1 300 45.7
Sc22g0003380 Simmondsia chinensis HOM05D003971 ORTHO05D004762 4.6e-74 282.3 298 46.0
Aa31LG10G8100 Aethionema arabicum HOM05D003971 ORTHO05D004762 6.0e-74 282.0 297 46.1
AL6G31450 Arabidopsis lyrata HOM05D003971 ORTHO05D004762 1.3e-73 280.8 298 44.6
CARHR192940 Cardamine hirsuta HOM05D003971 ORTHO05D004762 1.8e-73 280.4 298 45.3
AT5G19920 Arabidopsis thaliana HOM05D003971 ORTHO05D004762 2.3e-73 280.0 298 44.6
Carub.0006s1829 Capsella rubella HOM05D003971 ORTHO05D004762 1.5e-72 277.3 298 44.3
BcaB08g36556 Brassica carinata HOM05D003971 ORTHO05D004762 4.3e-72 275.8 298 44.3
A10p19810 Brassica napus HOM05D003971 ORTHO05D004762 5.7e-72 275.4 299 44.1
BraA10t44057Z Brassica rapa HOM05D003971 ORTHO05D004762 5.7e-72 275.4 299 44.1
BcaC04g19398 Brassica carinata HOM05D003971 ORTHO05D004762 2.8e-71 273.1 298 44.3
Sp6g24460 Schrenkiella parvula HOM05D003971 ORTHO05D004762 3.7e-71 272.7 298 44.3
C09p56130 Brassica napus HOM05D003971 ORTHO05D004762 4.8e-71 272.3 299 43.8
BolC9t58480H Brassica oleracea HOM05D003971 ORTHO05D004762 4.8e-71 272.3 299 43.8
Lsat_1_v5_gn_4_84501 Lactuca sativa HOM05D003971 ORTHO05D004762 1.2e-69 267.7 301 43.5
Thhalv10013007m.g Eutrema salsugineum HOM05D003971 ORTHO05D004762 3.4e-69 266.2 299 44.1
Ah.11g046910 Amaranthus hybridus HOM05D001469 ORTHO05D001648 1.7e-68 263.8 242 49.2
Haze_07098 Corylus avellana HOM05D003971 ORTHO05D004762 1.7e-68 263.8 270 47.4
SHI34430 Sapria himalayana HOM05D003971 ORTHO05D004762 3.8e-68 262.7 329 40.4
A02p05920 Brassica napus HOM05D003971 ORTHO05D004762 5.5e-67 258.8 308 42.2
BraA02t05544Z Brassica rapa HOM05D003971 ORTHO05D004762 5.5e-67 258.8 308 42.2
COL.COLO4_37254 Corchorus olitorius HOM05D003971 ORTHO05D004762 1.6e-66 257.3 244 49.6
Manes.06G126801 Manihot esculenta HOM05D003971 ORTHO05D004762 2.1e-66 256.9 257 47.1
HanXRQChr17g0565911 Helianthus annuus HOM05D003971 ORTHO05D004762 2.3e-65 253.4 264 46.6
BNapus_Darmor_BZH_scaffold_38p01950 Brassica napus HOM05D003971 ORTHO05D004762 8.7e-65 251.5 305 41.6
BolC2t06996H Brassica oleracea HOM05D003971 ORTHO05D004762 8.7e-65 251.5 305 41.6
HPP92_011657 Vanilla planifolia HOM05D003971 ORTHO05D004762 2.5e-64 250.0 227 52.9
TPR.G25960 Trifolium pratense HOM05D003971 ORTHO05D004762 2.1e-58 230.3 300 39.7
Cc03_g15560 Coffea canephora HOM05D003971 ORTHO05D004762 2.0e-56 223.8 275 42.5
Eucgr.L01129 Eucalyptus grandis HOM05D003971 ORTHO05D004762 6.9e-54 215.3 212 50.5
Nitab4.5_0000976g0020 Nicotiana tabacum HOM05D003971 ORTHO05D004762 6.9e-54 215.3 223 46.2
Eucgr.L01124 Eucalyptus grandis HOM05D003971 ORTHO05D004762 2.6e-53 213.4 212 50.5
Actinidia25522 Actinidia chinensis HOM05D000512 ORTHO05D004762 9.4e-51 204.9 201 49.3
Potri.015G106300 Populus trichocarpa HOM05D003971 ORTHO05D004762 1.9e-43 180.6 196 43.4
Sc04g0000200 Simmondsia chinensis HOM05D003971 ORTHO05D004762 7.2e-43 178.7 196 43.4
RcHm_v2.0_Chr1g0373351 Rosa chinensis HOM05D003971 ORTHO05D004762 4.8e-39 166.0 181 44.8
Solyc03g118220.3 Solanum lycopersicum HOM05D003971 ORTHO05D004762 2.4e-38 163.7 194 40.2
Lalb_Chr12g0202501 Lupinus albus HOM05D003971 ORTHO05D004762 2.2e-36 157.1 164 47.0
CDE02G0369 Ceratophyllum demersum HOM05D003971 ORTHO05D004762 6.1e-34 149.1 176 43.8
SMO334G0050 Selaginella moellendorffii HOM05D003971 ORTHO05D004762 2.6e-32 143.7 251 32.3
SalBow7G2108 Salvia bowleyana HOM05D003971 ORTHO05D004762 9.1e-30 135.2 119 53.8
Solyc03g118210.3 Solanum lycopersicum HOM05D003971 ORTHO05D004762 4.5e-29 132.9 106 57.5
SGA_v2.0_scaffold74G24722 Striga asiatica HOM05D003971 ORTHO05D004762 1.3e-28 131.3 135 48.9
Oeu012846.1 Olea europaea HOM05D003971 ORTHO05D004433 2.3e-20 104.0 139 41.7
CSS0006697 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 5.0e-20 102.8 81 56.8
Os08g0511500 Oryza sativa ssp. japonica HOM05D003971 ORTHO05D004762 1.0e-17 95.1 95 43.2
Dinv13722 Davidia involucrata HOM05D000475 ORTHO05D000343 9.8e-16 88.6 67 58.2
Dinv23224 Davidia involucrata HOM05D000475 ORTHO05D000343 1.3e-15 88.2 65 61.5
CSS0040784 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 7.0e-14 82.4 83 42.2
Oeu061253.1 Olea europaea HOM05D003971 ORTHO05D004762 1.8e-09 67.8 74 40.5
HPP92_011707 Vanilla planifolia HOM05D003971 ORTHO05D004762 2.3e-09 67.4 64 48.4
Hma1.2p1_0664F.1_g199006 Hydrangea macrophylla HOM05D003971 ORTHO05D004762 6.8e-09 65.9 64 43.8
Lalb_Chr12g0202511 Lupinus albus HOM05D003971 ORTHO05D004762 7.5e-08 62.4 64 40.6


User provided reference genes

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