Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g37411 Chara braunii HOM05D005270 ORTHO05D006239 5.5e-273 943.7 490 100.0
AagrBONN_evm.TU.Sc2ySwM_369.586 Anthoceros agrestis HOM05D005270 ORTHO05D006239 3.3e-116 422.9 373 58.7
Pp3c15_6350 Physcomitrium patens HOM05D005270 ORTHO05D006239 4.7e-115 419.1 369 57.7
MBI04_g37584_MAGBIO Magnolia biondii HOM05D005270 ORTHO05D006239 5.8e-113 412.1 337 61.4
PSO170G6680 Papaver somniferum HOM05D005270 ORTHO05D006239 3.2e-111 406.4 368 56.0
Gohir.D03G160700 Gossypium hirsutum HOM05D005270 ORTHO05D006239 1.7e-109 400.6 337 60.2
CDE12G0422 Ceratophyllum demersum HOM05D005270 ORTHO05D006239 6.6e-109 398.7 340 58.8
ATR1152G004 Amborella trichopoda HOM05D005270 ORTHO05D006239 8.6e-109 398.3 365 56.2
PSO017G6911 Papaver somniferum HOM05D005270 ORTHO05D006239 8.6e-109 398.3 360 56.4
Gohir.A03G010000 Gossypium hirsutum HOM05D005270 ORTHO05D006239 1.1e-108 397.9 337 59.9
Manes.01G076600 Manihot esculenta HOM05D005270 ORTHO05D006239 1.1e-108 397.9 337 60.2
Carub.0001s1190 Capsella rubella HOM05D005270 ORTHO05D006239 1.5e-108 397.5 361 57.1
CARHR012530 Cardamine hirsuta HOM05D005270 ORTHO05D006239 1.9e-108 397.1 369 56.9
Potri.001G120400 Populus trichocarpa HOM05D005270 ORTHO05D006239 1.9e-108 397.1 337 59.6
TAR629G2769 Trochodendron aralioides HOM05D005270 ORTHO05D006239 1.9e-108 397.1 337 59.9
Duzib068G0557 Durio zibethinus HOM05D005270 ORTHO05D006239 3.3e-108 396.4 337 60.2
arahy.Tifrunner.gnm1.ann1.VW53Z5 Arachis hypogaea HOM05D005270 ORTHO05D006239 4.3e-108 396.0 342 59.6
Gohir.A09G195500 Gossypium hirsutum HOM05D005270 ORTHO05D006239 4.3e-108 396.0 337 59.9
Gohir.D09G190100 Gossypium hirsutum HOM05D005270 ORTHO05D006239 4.3e-108 396.0 337 59.9
Gorai.006G212700 Gossypium raimondii HOM05D005270 ORTHO05D006239 4.3e-108 396.0 337 59.9
THA.LOC104809459 Tarenaya hassleriana HOM05D005270 ORTHO05D006239 4.3e-108 396.0 368 56.5
arahy.Tifrunner.gnm1.ann1.9F7ELE Arachis hypogaea HOM05D005270 ORTHO05D006239 5.6e-108 395.6 342 59.4
MD06G1067000 Malus domestica HOM05D005270 ORTHO05D006239 7.3e-108 395.2 339 58.1
Prupe.5G075500 Prunus persica HOM05D005270 ORTHO05D006239 9.6e-108 394.8 350 57.4
QL12p013868 Quercus lobata HOM05D005270 ORTHO05D006239 9.6e-108 394.8 336 60.1
Cc08_g12920 Coffea canephora HOM05D005270 ORTHO05D006239 1.2e-107 394.4 337 57.6
MELO3C005559.2 Cucumis melo HOM05D005270 ORTHO05D006239 1.2e-107 394.4 381 54.3
RcHm_v2.0_Chr7g0202331 Rosa chinensis HOM05D005270 ORTHO05D006239 1.2e-107 394.4 337 58.8
CSS0023019 Camellia sinensis var. sinensis HOM05D005270 ORTHO05D006239 1.6e-107 394.0 339 58.4
CSS0046114 Camellia sinensis var. sinensis HOM05D005270 ORTHO05D006239 1.6e-107 394.0 339 58.4
Hma1.2p1_1414F.1_g281890 Hydrangea macrophylla HOM05D005270 ORTHO05D006239 1.6e-107 394.0 337 58.5
Sc01g0009340 Simmondsia chinensis HOM05D005270 ORTHO05D006239 1.6e-107 394.0 382 53.4
PGR031G3926 Punica granatum HOM05D005270 ORTHO05D006239 2.1e-107 393.7 372 55.4
Thecc.03G257000 Theobroma cacao HOM05D005270 ORTHO05D006239 2.1e-107 393.7 337 59.3
Atru.chr9.1379_Atru.chr9.1380 Acer truncatum HOM05D005270 ORTHO05D006239 2.8e-107 393.3 338 58.6
FAN08G1405 Fragaria x ananassa HOM05D005270 ORTHO05D006239 2.8e-107 393.3 339 58.1
FvH4_5g00280 Fragaria vesca HOM05D005270 ORTHO05D006239 3.6e-107 392.9 339 58.1
CANSAT21G2027 Cannabis sativa HOM05D005270 ORTHO05D006239 4.7e-107 392.5 337 58.8
FAN13G2928 Fragaria x ananassa HOM05D005270 ORTHO05D006239 4.7e-107 392.5 339 58.1
FAN18G1040 Fragaria x ananassa HOM05D005270 ORTHO05D006239 6.2e-107 392.1 339 58.1
HPP92_022434 Vanilla planifolia HOM05D005270 ORTHO05D006239 6.2e-107 392.1 338 58.0
Thhalv10007790m.g Eutrema salsugineum HOM05D005270 ORTHO05D006239 8.1e-107 391.7 338 59.5
Sed0019529 Sechium edule HOM05D005270 ORTHO05D006239 8.1e-107 391.7 393 53.4
Glyma.05G056400 Glycine max HOM05D005270 ORTHO05D006239 1.1e-106 391.3 341 58.1
Sp1g10840 Schrenkiella parvula HOM05D005270 ORTHO05D006239 1.1e-106 391.3 338 59.5
MSTRG.25537 Avicennia marina HOM05D005270 ORTHO05D006239 1.4e-106 391.0 337 58.2
Ca_25339_v3 Cicer arietinum L. HOM05D005270 ORTHO05D006239 1.4e-106 391.0 340 59.1
ClCG01G003850 Citrullus lanatus HOM05D005270 ORTHO05D006239 1.4e-106 391.0 381 54.3
CsaV3_5G003980 Cucumis sativus L. HOM05D005270 ORTHO05D006239 1.4e-106 391.0 381 53.8
Eucgr.D02030 Eucalyptus grandis HOM05D005270 ORTHO05D006239 1.8e-106 390.6 369 55.3
Medtr4g101620 Medicago truncatula HOM05D005270 ORTHO05D006239 1.8e-106 390.6 340 58.5
Actinidia05188 Actinidia chinensis HOM05D005270 ORTHO05D006239 2.4e-106 390.2 339 57.5
Actinidia27450 Actinidia chinensis HOM05D005270 ORTHO05D006239 2.4e-106 390.2 339 57.5
Peaxi162Scf00002g00815 Petunia axillaris HOM05D005270 ORTHO05D006239 2.4e-106 390.2 337 57.3
unitig_0.g1234 Utricularia gibba HOM05D005270 ORTHO05D006239 2.4e-106 390.2 337 57.9
GSVIVG01001274001 Vitis vinifera HOM05D005270 ORTHO05D006239 2.4e-106 390.2 337 58.5
Lj2A211T58 Lonicera japonica HOM05D005270 ORTHO05D006239 3.1e-106 389.8 337 57.6
Rhsim07G0104300 Rhododendron simsii HOM05D005270 ORTHO05D006239 3.1e-106 389.8 339 57.5
Migut.E01048 Erythranthe guttata HOM05D005270 ORTHO05D006239 4.0e-106 389.4 337 57.0
Aqoxy7G00723 Aquilegia oxysepala HOM05D005270 ORTHO05D006239 5.2e-106 389.0 337 57.6
AL1G23510 Arabidopsis lyrata HOM05D005270 ORTHO05D006239 5.2e-106 389.0 384 54.4
BolC5t29844H Brassica oleracea HOM05D005270 ORTHO05D006239 5.2e-106 389.0 339 58.7
Sabra01G0092800 Salix brachista HOM05D005270 ORTHO05D006239 5.2e-106 389.0 337 58.5
A06p09330 Brassica napus HOM05D005270 ORTHO05D006239 6.8e-106 388.7 390 54.4
BraA06t24120Z Brassica rapa HOM05D005270 ORTHO05D006239 6.8e-106 388.7 339 59.0
Lsat_1_v5_gn_6_90321 Lactuca sativa HOM05D005270 ORTHO05D006239 6.8e-106 388.7 337 57.6
C05p11010 Brassica napus HOM05D005270 ORTHO05D006239 8.9e-106 388.3 339 58.7
FAN04G3018 Fragaria x ananassa HOM05D005270 ORTHO05D006239 8.9e-106 388.3 344 57.6
Aa31LG1G2400 Aethionema arabicum HOM05D005270 ORTHO05D006239 1.2e-105 387.9 342 57.3
Dinv21601 Davidia involucrata HOM05D005270 ORTHO05D006239 1.2e-105 387.9 337 57.6
TWI81G0718 Tripterygium wilfordii HOM05D005270 ORTHO05D006239 1.2e-105 387.9 405 52.3
Oeu038010.1 Olea europaea HOM05D005270 ORTHO05D006239 1.5e-105 387.5 337 57.9
SGA_v2.0_scaffold144G35994 Striga asiatica HOM05D005270 ORTHO05D003965 1.5e-105 387.5 335 58.5
GSVIVG01004774001 Vitis vinifera HOM05D005270 ORTHO05D006239 1.5e-105 387.5 337 58.2
ECA240G0014 Erigeron canadensis HOM05D000201 ORTHO05D006239 2.0e-105 387.1 336 58.0
Psat4g070360 Pisum sativum HOM05D005270 ORTHO05D006239 2.0e-105 387.1 351 56.7
PGSC0003DMG400004791 Solanum tuberosum HOM05D005270 ORTHO05D006239 2.6e-105 386.7 337 57.6
TPR.G37612 Trifolium pratense HOM05D005270 ORTHO05D006239 2.6e-105 386.7 340 58.8
Zm00001eb172680 Zea mays HOM05D005270 ORTHO05D006239 2.6e-105 386.7 363 54.5
Ciclev10020501m.g Citrus clementina HOM05D005270 ORTHO05D006239 3.4e-105 386.3 337 57.6
Lj4g0020394 Lotus japonicus HOM05D005270 ORTHO05D006239 4.4e-105 386.0 341 58.7
Glyma.17G138600 Glycine max HOM05D005270 ORTHO05D006239 5.8e-105 385.6 341 57.8
Sopen08g027530 Solanum pennellii HOM05D005270 ORTHO05D006239 5.8e-105 385.6 337 57.6
AT1G12230 Arabidopsis thaliana HOM05D005270 ORTHO05D006239 7.6e-105 385.2 407 52.6
Solyc08g079070.2 Solanum lycopersicum HOM05D005270 ORTHO05D006239 7.6e-105 385.2 337 57.9
CAN.G1217.18 Capsicum annuum HOM05D000486 ORTHO05D000375 9.9e-105 384.8 335 57.9
CiPaw.11G150400 Carya illinoinensis HOM05D005270 ORTHO05D006239 1.7e-104 384.0 337 57.9
Lalb_Chr05g0225581 Lupinus albus HOM05D005270 ORTHO05D006239 1.7e-104 384.0 341 57.5
HanXRQChr03g0087851 Helianthus annuus HOM05D005270 ORTHO05D006239 2.9e-104 383.3 358 54.5
SalBow1G0839 Salvia bowleyana HOM05D005270 ORTHO05D006239 8.4e-104 381.7 345 57.1
Dinv39103 Davidia involucrata HOM05D000201 ORTHO05D001515 1.4e-103 380.9 355 54.9
vmacro14106 Vaccinium macrocarpon HOM05D005270 ORTHO05D006239 1.0e-101 374.8 356 54.5
Nitab4.5_0009175g0010 Nicotiana tabacum HOM05D005270 ORTHO05D006239 2.8e-99 366.7 342 55.6
DCAR_006814 Daucus carota HOM05D005270 ORTHO05D006239 2.1e-94 350.5 337 54.6
AUR62007475 Chenopodium quinoa HOM05D005270 ORTHO05D006239 2.7e-94 350.1 337 54.3
Cpa.g.sc29.127 Carica papaya HOM05D005270 ORTHO05D006239 1.3e-93 347.8 289 61.6
Nitab4.5_0000993g0070 Nicotiana tabacum HOM05D005270 ORTHO05D006239 1.9e-92 344.0 337 53.7
VMungo0251G3554 Vigna mungo HOM05D005270 ORTHO05D006239 4.3e-92 342.8 306 56.5
EL10Ac5g13010 Beta vulgaris HOM05D005270 ORTHO05D006239 7.4e-92 342.0 342 52.3
Phvul.003G218000 Phaseolus vulgaris HOM05D005270 ORTHO05D006239 4.8e-91 339.3 306 55.9
Duzib205G1833 Durio zibethinus HOM05D005270 ORTHO05D006239 5.8e-89 332.4 340 52.1
COL.COLO4_37215 Corchorus olitorius HOM05D005270 ORTHO05D006239 9.9e-89 331.6 283 58.3
BcaC05g25195 Brassica carinata HOM05D005270 ORTHO05D006239 2.1e-83 313.9 338 50.9
SalBow1G5553 Salvia bowleyana HOM05D005270 ORTHO05D006239 5.7e-76 289.3 404 41.6
Mapoly0029s0033 Marchantia polymorpha HOM05D005270 ORTHO05D006239 1.2e-62 245.0 190 64.2
Mapoly0029s0029 Marchantia polymorpha HOM05D005270 ORTHO05D006239 1.6e-62 244.6 203 60.1
Psat5g235160 Pisum sativum HOM05D005270 ORTHO05D006239 6.3e-51 206.1 250 46.4
Sed0011689 Sechium edule HOM05D005270 ORTHO05D006239 5.9e-49 199.5 229 50.2
CDE04G1696 Ceratophyllum demersum HOM05D005270 ORTHO05D006239 1.7e-48 198.0 165 58.2
Psat5g232960 Pisum sativum HOM05D005270 ORTHO05D006239 1.7e-48 198.0 250 44.4
Os08g0154300 Oryza sativa ssp. japonica HOM05D005270 ORTHO05D006239 2.2e-48 197.6 189 55.0
Gorai.N027100 Gossypium raimondii HOM05D005270 ORTHO05D006239 4.7e-46 189.9 160 56.2
Cre14.g630847 Chlamydomonas reinhardtii HOM05D005270 ORTHO05D006239 2.2e-40 171.0 377 33.4
Cre01.g032650 Chlamydomonas reinhardtii HOM05D005270 ORTHO05D006239 1.2e-36 158.7 350 31.7
MCO13G140 Micromonas commoda HOM05D005270 ORTHO05D006239 3.4e-36 157.1 330 33.0
Haze_07851 Corylus avellana HOM05D005270 ORTHO05D006239 1.0e-32 145.6 273 37.4
SEGI_05849 Sequoiadendron giganteum HOM05D005270 ORTHO05D006239 1.9e-31 141.4 100 65.0
CDE04G2727 Ceratophyllum demersum HOM05D005270 ORTHO05D006239 3.2e-31 140.6 203 39.4
PRCOL_00004111 Prasinoderma coloniale HOM05D005270 ORTHO05D006239 7.2e-31 139.4 321 29.9
DCAR_004923 Daucus carota HOM05D005270 ORTHO05D006239 1.6e-30 138.3 160 42.5
SEGI_36758 Sequoiadendron giganteum HOM05D005270 ORTHO05D006239 2.4e-26 124.4 139 49.6
Ca_29061_v3 Cicer arietinum L. HOM05D001546 ORTHO05D002908 5.4e-26 123.2 209 35.9
Atru.chr9.1382 Acer truncatum HOM05D005270 ORTHO05D006239 7.0e-26 122.9 111 57.7
SEGI_03700 Sequoiadendron giganteum HOM05D005270 ORTHO05D006239 4.3e-23 113.6 110 53.6
PRCOL_00004269 Prasinoderma coloniale HOM05D005270 ORTHO05D006239 1.6e-22 111.7 243 30.5
AUR62039933 Chenopodium quinoa HOM05D005270 ORTHO05D006239 6.1e-22 109.8 110 50.9
Atru.chr9.1383 Acer truncatum HOM05D005270 ORTHO05D006239 8.0e-22 109.4 110 51.8
Gorai.003G169200 Gossypium raimondii HOM05D005270 ORTHO05D006239 3.9e-16 90.5 82 56.1
PRCOL_00005862 Prasinoderma coloniale HOM05D005270 ORTHO05D333221 3.9e-16 90.5 262 28.2
FAN11G3467 Fragaria x ananassa HOM05D005270 ORTHO05D006239 8.6e-16 89.4 140 39.3
FAN28G1011 Fragaria x ananassa HOM05D005270 ORTHO05D006239 1.1e-15 89.0 140 39.3
BcaC07g41719 Brassica carinata HOM05D005270 ORTHO05D039702 1.4e-10 72.0 76 52.6
BolC8t52299H Brassica oleracea HOM05D005270 ORTHO05D039702 1.4e-10 72.0 76 52.6
BcaC07g38600 Brassica carinata HOM05D000238 ORTHO05D037998 1.9e-10 71.6 49 73.5
RcHm_v2.0_Chr6g0270571 Rosa chinensis HOM05D005270 ORTHO05D006239 1.9e-10 71.6 69 53.6
CAN.G1488.1 Capsicum annuum HOM05D005270 ORTHO05D006239 2.4e-10 71.2 51 60.8
CAN.G605.8 Capsicum annuum HOM05D005270 ORTHO05D006239 4.1e-10 70.5 52 57.7
MBI03_g13472_MAGBIO Magnolia biondii HOM05D005270 ORTHO05D006239 7.0e-10 69.7 71 52.1
MBI14_g06401_MAGBIO Magnolia biondii HOM05D005270 ORTHO05D006239 9.2e-10 69.3 51 64.7
MBI15_g47610_MAGBIO Magnolia biondii HOM05D001260 ORTHO05D004134 9.2e-10 69.3 65 55.4
GSVIVG01028518001 Vitis vinifera HOM05D005270 ORTHO05D006239 1.2e-09 68.9 52 57.7
CAN.G1143.36 Capsicum annuum HOM05D001836 ORTHO05D001519 7.8e-09 66.2 67 46.3
RcHm_v2.0_Chr6g0254981 Rosa chinensis HOM05D005270 ORTHO05D006239 1.0e-08 65.9 65 56.9
CSS0018551 Camellia sinensis var. sinensis HOM05D000691 ORTHO05D000378 5.0e-08 63.5 83 45.8
FAN04G2435 Fragaria x ananassa HOM05D005270 ORTHO05D006239 8.6e-08 62.8 59 54.2
MCO07G268 Micromonas commoda HOM05D019552 ORTHO05D021310 7.3e-07 59.7 146 26.7


User provided reference genes

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