Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g37250 Chara braunii HOM05D003833 ORTHO05D004209 1.9e-53 212.2 105 100.0
CBR_g16006 Chara braunii HOM05D003833 ORTHO05D004209 6.5e-30 134.0 69 97.1
SMO337G0103 Selaginella moellendorffii HOM05D003833 ORTHO05D004209 8.0e-20 100.5 69 71.0
SEGI_35199 Sequoiadendron giganteum HOM05D003833 ORTHO05D004209 1.0e-19 100.1 69 69.6
SEGI_40635 Sequoiadendron giganteum HOM05D003833 ORTHO05D004209 1.0e-19 100.1 69 69.6
Cre03.g154550 Chlamydomonas reinhardtii HOM05D003833 ORTHO05D004209 3.0e-19 98.6 68 73.5
COL.COLO4_33945 Corchorus olitorius HOM05D003833 ORTHO05D004209 3.0e-19 98.6 69 71.0
THA.LOC104816595 Tarenaya hassleriana HOM05D003833 ORTHO05D004209 3.0e-19 98.6 69 71.0
CiPaw.09G044700 Carya illinoinensis HOM05D003833 ORTHO05D004209 4.0e-19 98.2 69 68.1
MSTRG.10798 Avicennia marina HOM05D003833 ORTHO05D004209 6.8e-19 97.4 69 63.8
DCAR_020545 Daucus carota HOM05D003833 ORTHO05D004209 6.8e-19 97.4 69 66.7
AagrBONN_evm.TU.Sc2ySwM_368.1806 Anthoceros agrestis HOM05D003833 ORTHO05D004209 8.8e-19 97.1 69 66.7
ECA232G1919 Erigeron canadensis HOM05D003833 ORTHO05D004209 8.8e-19 97.1 69 66.7
Zm00001eb141220 Zea mays HOM05D003833 ORTHO05D004209 8.8e-19 97.1 69 65.2
AagrBONN_evm.TU.Sc2ySwM_368.156 Anthoceros agrestis HOM05D003833 ORTHO05D004209 1.2e-18 96.7 69 66.7
arahy.Tifrunner.gnm1.ann1.C9KHWR Arachis hypogaea HOM05D003833 ORTHO05D004209 1.5e-18 96.3 69 68.1
Oeu029492.1 Olea europaea HOM05D003833 ORTHO05D004209 1.5e-18 96.3 69 62.3
QL07p007726 Quercus lobata HOM05D003833 ORTHO05D004209 1.5e-18 96.3 69 68.1
arahy.Tifrunner.gnm1.ann1.LP5CTB Arachis hypogaea HOM05D003833 ORTHO05D004209 2.0e-18 95.9 69 66.7
CANSAT64G1401 Cannabis sativa HOM05D003833 ORTHO05D004209 2.0e-18 95.9 69 68.1
Ciclev10005607m.g Citrus clementina HOM05D003833 ORTHO05D004209 2.0e-18 95.9 69 66.7
Duzib093G1609 Durio zibethinus HOM05D003833 ORTHO05D004209 2.0e-18 95.9 69 68.1
Manes.09G008001 Manihot esculenta HOM05D003833 ORTHO05D004209 2.0e-18 95.9 69 66.7
MSTRG.15651 Avicennia marina HOM05D003833 ORTHO05D004209 2.6e-18 95.5 69 60.9
Glyma.03G129100 Glycine max HOM05D003833 ORTHO05D004209 2.6e-18 95.5 69 65.2
Aqoxy2G03781 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 3.4e-18 95.1 69 65.2
ClCG04G004210 Citrullus lanatus HOM05D003833 ORTHO05D004209 3.4e-18 95.1 69 65.2
CsaV3_4G027860 Cucumis sativus L. HOM05D003833 ORTHO05D004209 3.4e-18 95.1 69 68.1
Sed0017232 Sechium edule HOM05D003833 ORTHO05D004209 3.4e-18 95.1 69 65.2
SGA_v2.0_scaffold94G28522 Striga asiatica HOM05D003833 ORTHO05D004209 3.4e-18 95.1 69 62.3
TWI53G1459 Tripterygium wilfordii HOM05D003833 ORTHO05D004209 3.4e-18 95.1 69 66.7
Aa31LG11G14650 Aethionema arabicum HOM05D003833 ORTHO05D004209 4.4e-18 94.7 70 67.1
Aqoxy2G00325 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 4.4e-18 94.7 69 63.8
MELO3C019039.2 Cucumis melo HOM05D003833 ORTHO05D004209 4.4e-18 94.7 69 66.7
Lj1g0026826 Lotus japonicus HOM05D003833 ORTHO05D004209 4.4e-18 94.7 69 63.8
Thecc.05G140900 Theobroma cacao HOM05D003833 ORTHO05D004209 4.4e-18 94.7 69 65.2
Atru.chr1.1452 Acer truncatum HOM05D003833 ORTHO05D004209 5.7e-18 94.4 69 62.3
Atru.chr1.1464 Acer truncatum HOM05D003833 ORTHO05D004209 5.7e-18 94.4 69 62.3
Actinidia39173 Actinidia chinensis HOM05D003833 ORTHO05D004209 5.7e-18 94.4 69 65.2
BcaC04g19007 Brassica carinata HOM05D003833 ORTHO05D004209 5.7e-18 94.4 69 66.7
A10p23880 Brassica napus HOM05D003833 ORTHO05D004209 5.7e-18 94.4 69 66.7
BolC9t59073H Brassica oleracea HOM05D003833 ORTHO05D004209 5.7e-18 94.4 69 66.7
BraA10t44452Z Brassica rapa HOM05D003833 ORTHO05D004209 5.7e-18 94.4 69 66.7
Os01g0948400 Oryza sativa ssp. japonica HOM05D003833 ORTHO05D004209 5.7e-18 94.4 69 63.8
BcaB08g36945 Brassica carinata HOM05D003833 ORTHO05D004209 7.5e-18 94.0 69 68.1
CSS0041120 Camellia sinensis var. sinensis HOM05D003833 ORTHO05D004209 7.5e-18 94.0 69 62.3
CARHR198510 Cardamine hirsuta HOM05D003833 ORTHO05D004209 7.5e-18 94.0 69 68.1
Thhalv10014353m.g Eutrema salsugineum HOM05D003833 ORTHO05D004209 7.5e-18 94.0 69 68.1
HanXRQChr09g0266491 Helianthus annuus HOM05D003833 ORTHO05D004209 7.5e-18 94.0 69 63.8
Lsat_1_v5_gn_4_129320 Lactuca sativa HOM05D003833 ORTHO05D004209 7.5e-18 94.0 70 62.9
Lalb_Chr14g0365931 Lupinus albus HOM05D003833 ORTHO05D004209 9.8e-18 93.6 69 66.7
Sed0027268 Sechium edule HOM05D003833 ORTHO05D004209 9.8e-18 93.6 69 65.2
AL6G25600 Arabidopsis lyrata HOM05D003833 ORTHO05D004209 1.3e-17 93.2 69 66.7
BcaC02g11392 Brassica carinata HOM05D003833 ORTHO05D004209 1.3e-17 93.2 69 66.7
A03p06820 Brassica napus HOM05D003833 ORTHO05D004209 1.3e-17 93.2 69 66.7
C03p82400 Brassica napus HOM05D003833 ORTHO05D004209 1.3e-17 93.2 69 66.7
C09p62360 Brassica napus HOM05D003833 ORTHO05D004209 1.3e-17 93.2 69 65.2
BolC3t20513H Brassica oleracea HOM05D003833 ORTHO05D004209 1.3e-17 93.2 69 66.7
Cfa016709 Carpinus fangiana HOM05D003833 ORTHO05D004209 1.3e-17 93.2 69 63.8
Haze_19732 Corylus avellana HOM05D003833 ORTHO05D004209 1.3e-17 93.2 69 63.8
Glyma.19G131500 Glycine max HOM05D003833 ORTHO05D004209 1.3e-17 93.2 69 63.8
Psat3g078000 Pisum sativum HOM05D003833 ORTHO05D004209 1.3e-17 93.2 69 62.3
BcaB01g05096 Brassica carinata HOM05D003833 ORTHO05D004209 1.7e-17 92.8 69 65.2
C03p07820 Brassica napus HOM05D003833 ORTHO05D004209 1.7e-17 92.8 69 65.2
BolC3t13281H Brassica oleracea HOM05D003833 ORTHO05D004209 1.7e-17 92.8 69 65.2
Carub.0006s1298 Capsella rubella HOM05D003833 ORTHO05D004209 1.7e-17 92.8 69 66.7
FvH4_6g25150 Fragaria vesca HOM05D003833 ORTHO05D004209 1.7e-17 92.8 69 62.3
FAN02G2058 Fragaria x ananassa HOM05D003833 ORTHO05D004209 1.7e-17 92.8 69 62.3
FAN14G1808 Fragaria x ananassa HOM05D003833 ORTHO05D004209 1.7e-17 92.8 69 62.3
Medtr7g090160 Medicago truncatula HOM05D003833 ORTHO05D004209 1.7e-17 92.8 69 62.3
Phvul.001G124300 Phaseolus vulgaris HOM05D003833 ORTHO05D004209 1.7e-17 92.8 69 63.8
Pp3c10_15650 Physcomitrium patens HOM05D003833 ORTHO05D004209 1.7e-17 92.8 69 65.2
Prupe.7G045500 Prunus persica HOM05D003833 ORTHO05D004209 1.7e-17 92.8 69 63.8
Sp6g29240 Schrenkiella parvula HOM05D003833 ORTHO05D004209 1.7e-17 92.8 69 66.7
TPR.G9312 Trifolium pratense HOM05D003833 ORTHO05D004209 1.7e-17 92.8 69 62.3
unitig_26.g8850 Utricularia gibba HOM05D003833 ORTHO05D004209 1.7e-17 92.8 68 61.8
VMungo1383G2371 Vigna mungo HOM05D003833 ORTHO05D004209 1.7e-17 92.8 69 62.3
C04p16080 Brassica napus HOM05D003833 ORTHO05D004209 2.2e-17 92.4 69 66.7
BolC4t23181H Brassica oleracea HOM05D003833 ORTHO05D004209 2.2e-17 92.4 69 66.7
FAN05G1327 Fragaria x ananassa HOM05D003833 ORTHO05D004209 2.2e-17 92.4 69 62.3
FAN05G4135 Fragaria x ananassa HOM05D003833 ORTHO05D004209 2.2e-17 92.4 69 62.3
vmacro07822 Vaccinium macrocarpon HOM05D003833 ORTHO05D004209 2.2e-17 92.4 69 60.9
EL10Ac3g07192 Beta vulgaris HOM05D003833 ORTHO05D004209 2.8e-17 92.0 68 60.3
PGR142G2709 Punica granatum HOM05D003833 ORTHO05D004209 2.8e-17 92.0 69 62.3
C03p82420 Brassica napus HOM05D003833 ORTHO05D004209 3.7e-17 91.7 68 66.2
BolC3t20511H Brassica oleracea HOM05D003833 ORTHO05D004209 3.7e-17 91.7 68 66.2
Cpa.g.sc49.96 Carica papaya HOM05D003833 ORTHO05D004209 3.7e-17 91.7 69 63.8
Dinv34388 Davidia involucrata HOM05D003833 ORTHO05D004209 3.7e-17 91.7 69 62.3
Rhsim03G0034800 Rhododendron simsii HOM05D003833 ORTHO05D004209 3.7e-17 91.7 69 59.4
RhsimUnG0217200 Rhododendron simsii HOM05D003833 ORTHO05D004209 3.7e-17 91.7 69 59.4
Sc13g0001320 Simmondsia chinensis HOM05D003833 ORTHO05D004209 3.7e-17 91.7 69 62.3
Solyc02g068640.3 Solanum lycopersicum HOM05D003833 ORTHO05D004209 3.7e-17 91.7 69 60.9
Sopen02g017810 Solanum pennellii HOM05D003833 ORTHO05D004209 3.7e-17 91.7 69 60.9
PGSC0003DMG400010441 Solanum tuberosum HOM05D003833 ORTHO05D004209 3.7e-17 91.7 69 60.9
Ca_08401_v3 Cicer arietinum L. HOM05D003833 ORTHO05D004209 4.8e-17 91.3 69 60.9
Dinv08489 Davidia involucrata HOM05D003833 ORTHO05D004209 4.8e-17 91.3 69 62.3
Gohir.A07G024700 Gossypium hirsutum HOM05D003833 ORTHO05D004209 4.8e-17 91.3 69 63.8
Gohir.D07G028300 Gossypium hirsutum HOM05D003833 ORTHO05D004209 4.8e-17 91.3 69 63.8
Gorai.001G029600 Gossypium raimondii HOM05D003833 ORTHO05D004209 4.8e-17 91.3 69 63.8
Lj1A1105T22 Lonicera japonica HOM05D003833 ORTHO05D004209 4.8e-17 91.3 69 60.9
RcHm_v2.0_Chr1g0334171 Rosa chinensis HOM05D003833 ORTHO05D004209 4.8e-17 91.3 69 60.9
RcHm_v2.0_Chr2g0125021 Rosa chinensis HOM05D003833 ORTHO05D004209 4.8e-17 91.3 69 60.9
GSVIVG01033588001 Vitis vinifera HOM05D003833 ORTHO05D004209 4.8e-17 91.3 68 61.8
Eucgr.K01625 Eucalyptus grandis HOM05D003833 ORTHO05D004209 6.3e-17 90.9 69 62.3
Potri.006G042600 Populus trichocarpa HOM05D003833 ORTHO05D004209 6.3e-17 90.9 69 62.3
Sc13g0001340 Simmondsia chinensis HOM05D003833 ORTHO05D004209 6.3e-17 90.9 69 62.3
AT5G14800 Arabidopsis thaliana HOM05D003833 ORTHO05D004209 8.3e-17 90.5 69 65.2
Cc06_g18620 Coffea canephora HOM05D003833 ORTHO05D004209 8.3e-17 90.5 69 59.4
Dinv03868 Davidia involucrata HOM05D003833 ORTHO05D004209 8.3e-17 90.5 69 62.3
Migut.K00123 Erythranthe guttata HOM05D003833 ORTHO05D004209 8.3e-17 90.5 69 59.4
Sabra06G0028900 Salix brachista HOM05D003833 ORTHO05D004209 8.3e-17 90.5 69 62.3
ATR0721G010 Amborella trichopoda HOM05D003833 ORTHO05D004209 1.1e-16 90.1 67 67.2
MBI13_g29520_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 1.1e-16 90.1 69 62.3
MD14G1084400 Malus domestica HOM05D003833 ORTHO05D004209 1.1e-16 90.1 69 59.4
HPP92_001015 Vanilla planifolia HOM05D003833 ORTHO05D004209 1.1e-16 90.1 69 59.4
BolC6t37672H Brassica oleracea HOM05D003833 ORTHO05D004209 1.4e-16 89.7 69 63.8
PGR042G2932 Punica granatum HOM05D003833 ORTHO05D004209 1.4e-16 89.7 69 60.9
AUR62030362 Chenopodium quinoa HOM05D003833 ORTHO05D004209 1.8e-16 89.4 68 60.3
Lj2A394G34 Lonicera japonica HOM05D003833 ORTHO05D004209 1.8e-16 89.4 69 62.3
MD12G1094200 Malus domestica HOM05D003833 ORTHO05D004209 1.8e-16 89.4 69 59.4
Mapoly0029s0092 Marchantia polymorpha HOM05D003833 ORTHO05D004209 1.8e-16 89.4 68 64.7
TAR623G1635 Trochodendron aralioides HOM05D003833 ORTHO05D004209 1.8e-16 89.4 69 56.5
BraA03t10007Z Brassica rapa HOM05D003833 ORTHO05D004209 2.4e-16 89.0 73 64.4
SHI05043 Sapria himalayana HOM05D003833 ORTHO05D004209 2.4e-16 89.0 69 62.3
AUR62040845 Chenopodium quinoa HOM05D003833 ORTHO05D004209 3.1e-16 88.6 68 60.3
Ah.04g151120 Amaranthus hybridus HOM05D003833 ORTHO05D004209 4.1e-16 88.2 65 61.5
BcaC06g33558 Brassica carinata HOM05D003833 ORTHO05D004209 4.1e-16 88.2 69 62.3
Hund24632 Selenicereus undatus HOM05D003833 ORTHO05D004209 4.1e-16 88.2 69 56.5
Ah.13g077020 Amaranthus hybridus HOM05D003833 ORTHO05D004209 7.0e-16 87.4 65 60.0
C06p25140 Brassica napus HOM05D003833 ORTHO05D004209 9.1e-16 87.0 69 62.3
CDE09G0749 Ceratophyllum demersum HOM05D003833 ORTHO05D004209 1.2e-15 86.7 69 59.4
CDE02G3693 Ceratophyllum demersum HOM05D003833 ORTHO05D004209 4.5e-15 84.7 69 58.0
PSO210G1377 Papaver somniferum HOM05D003833 ORTHO05D004209 4.5e-15 84.7 68 60.3
PSO832G0079 Papaver somniferum HOM05D003833 ORTHO05D004209 4.5e-15 84.7 68 60.3
BcaC02g10122 Brassica carinata HOM05D003833 ORTHO05D004209 5.9e-15 84.3 64 62.5
Nitab4.5_0006282g0020 Nicotiana tabacum HOM05D003833 ORTHO05D004209 7.7e-15 84.0 74 55.4
Peaxi162Scf00149g00116 Petunia axillaris HOM05D003833 ORTHO05D004209 1.7e-14 82.8 80 51.2
BolC4t24169H Brassica oleracea HOM05D003833 ORTHO05D004209 5.0e-14 81.3 69 60.9
MCO05G631 Micromonas commoda HOM05D003833 ORTHO05D004209 5.0e-14 81.3 70 55.7
BcaC02g10661 Brassica carinata HOM05D003833 ORTHO05D004209 8.5e-14 80.5 63 63.5
C04p26360 Brassica napus HOM05D003833 ORTHO05D004209 8.5e-14 80.5 63 63.5
PSO782G0909 Papaver somniferum HOM05D003833 ORTHO05D004209 1.1e-13 80.1 68 55.9
PRCOL_00005946 Prasinoderma coloniale HOM05D003833 ORTHO05D004209 2.7e-12 75.5 58 60.3
MCO04G012 Micromonas commoda HOM05D003833 ORTHO05D004209 3.6e-12 75.1 55 69.1
Nn7g36480 Nelumbo nucifera HOM05D003833 ORTHO05D004209 6.1e-12 74.3 49 67.3
Prupe.7G045400 Prunus persica HOM05D003833 ORTHO05D004209 6.1e-12 74.3 69 47.8
Nitab4.5_0003379g0050 Nicotiana tabacum HOM05D003833 ORTHO05D004209 8.0e-12 73.9 96 41.7
MD12G1091800 Malus domestica HOM05D003833 ORTHO05D004209 4.0e-11 71.6 69 47.8
MD12G1094100 Malus domestica HOM05D003833 ORTHO05D004209 5.2e-11 71.2 69 46.4
Rhsim13G0081800 Rhododendron simsii HOM05D003833 ORTHO05D004209 8.8e-11 70.5 46 67.4
BcaC02g08088 Brassica carinata HOM05D003833 ORTHO05D004209 1.2e-10 70.1 45 68.9
C04p17110 Brassica napus HOM05D003833 ORTHO05D004209 1.5e-10 69.7 45 66.7
BolC4t23262H Brassica oleracea HOM05D003833 ORTHO05D004209 1.5e-10 69.7 45 66.7
BolC8t47752H Brassica oleracea HOM05D003833 ORTHO05D004209 3.4e-10 68.6 45 66.7
Oeu050503.1 Olea europaea HOM05D003833 ORTHO05D004209 3.4e-10 68.6 63 52.4
BcaC02g11310 Brassica carinata HOM05D003833 ORTHO05D004209 7.5e-10 67.4 45 66.7
C08p09060 Brassica napus HOM05D003833 ORTHO05D004209 9.8e-10 67.0 45 64.4
MBI03_g45406_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 1.7e-09 66.2 69 49.3
Eucgr.K01616 Eucalyptus grandis HOM05D003833 ORTHO05D004209 2.8e-09 65.5 71 47.9
BcaC08g44899 Brassica carinata HOM05D003833 ORTHO05D004209 3.7e-09 65.1 102 39.2
Duzib056G0002 Durio zibethinus HOM05D003833 ORTHO05D004209 4.9e-09 64.7 69 53.6
MBI03_g17131_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 1.1e-08 63.5 63 49.2
MBI09_g02151_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 1.2e-07 60.1 34 79.4
Haze_26946 Corylus avellana HOM05D003833 ORTHO05D004209 1.7e-06 56.2 58 51.7


User provided reference genes

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