Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g3722 Chara braunii HOM05D006171 ORTHO05D007294 1.2e-248 862.8 459 100.0
CBR_g39222 Chara braunii HOM05D006171 ORTHO05D007294 1.4e-145 520.4 335 81.5
Pp3c1_40240 Physcomitrium patens HOM05D006171 ORTHO05D007294 1.6e-109 400.6 346 63.0
Mapoly0047s0137 Marchantia polymorpha HOM05D006171 ORTHO05D007294 1.8e-108 397.1 346 59.8
Thecc.06G048100 Theobroma cacao HOM05D006171 ORTHO05D007294 7.6e-107 391.7 274 69.0
PGR102G1595 Punica granatum HOM05D006171 ORTHO05D007294 2.9e-106 389.8 277 69.7
Manes.11G069800 Manihot esculenta HOM05D006171 ORTHO05D007294 3.2e-105 386.3 272 68.8
A09p61030 Brassica napus HOM05D000031 ORTHO05D007294 5.4e-105 385.6 275 68.7
BraA09t41476Z Brassica rapa HOM05D000031 ORTHO05D007294 7.1e-105 385.2 273 68.9
THA.LOC104812426 Tarenaya hassleriana HOM05D006171 ORTHO05D007294 9.3e-105 384.8 277 66.4
Aa31LG7G650 Aethionema arabicum HOM05D006171 ORTHO05D007294 1.2e-104 384.4 278 67.6
Carub.0001s1588 Capsella rubella HOM05D006171 ORTHO05D007294 1.6e-104 384.0 278 67.3
Potri.003G185754 Populus trichocarpa HOM05D006171 ORTHO05D007294 2.7e-104 383.3 276 69.2
Sp1g14390 Schrenkiella parvula HOM05D006171 ORTHO05D007294 3.5e-104 382.9 278 67.6
Eucgr.F03988 Eucalyptus grandis HOM05D006171 ORTHO05D007294 4.6e-104 382.5 304 63.2
Potri.003G185501 Populus trichocarpa HOM05D006171 ORTHO05D007294 6.0e-104 382.1 276 68.8
Gohir.D05G117900 Gossypium hirsutum HOM05D006171 ORTHO05D007294 7.8e-104 381.7 255 70.6
Potri.001G040100 Populus trichocarpa HOM05D006171 ORTHO05D007294 1.0e-103 381.3 277 66.8
Hund22405 Selenicereus undatus HOM05D006171 ORTHO05D007294 1.3e-103 380.9 262 69.5
C08p44630 Brassica napus HOM05D000031 ORTHO05D007294 1.7e-103 380.6 277 67.5
BolC8t52009H Brassica oleracea HOM05D000031 ORTHO05D007294 1.7e-103 380.6 277 67.5
Prupe.3G104600 Prunus persica HOM05D006171 ORTHO05D007294 1.7e-103 380.6 261 69.3
RcHm_v2.0_Chr2g0132161 Rosa chinensis HOM05D006171 ORTHO05D007294 1.7e-103 380.6 261 69.7
SMO356G0223 Selaginella moellendorffii HOM05D006171 ORTHO05D007294 1.7e-103 380.6 258 71.3
Cpa.g.sc95.67 Carica papaya HOM05D006171 ORTHO05D007294 2.3e-103 380.2 277 66.4
Thhalv10008259m.g Eutrema salsugineum HOM05D006171 ORTHO05D007294 2.3e-103 380.2 278 67.3
CSS0034221 Camellia sinensis var. sinensis HOM05D006171 ORTHO05D007294 5.1e-103 379.0 261 70.5
CiPaw.01G256900 Carya illinoinensis HOM05D006171 ORTHO05D007294 5.1e-103 379.0 277 66.4
Duzib235G0222 Durio zibethinus HOM05D006171 ORTHO05D007294 5.1e-103 379.0 274 67.9
FvH4_6g28180 Fragaria vesca HOM05D006171 ORTHO05D007294 5.1e-103 379.0 261 68.6
Potri.003G185901 Populus trichocarpa HOM05D006171 ORTHO05D007294 5.1e-103 379.0 269 68.4
Nitab4.5_0002700g0080 Nicotiana tabacum HOM05D006171 ORTHO05D007294 6.6e-103 378.6 272 68.4
Rhsim12G0183500 Rhododendron simsii HOM05D006171 ORTHO05D007294 6.6e-103 378.6 255 70.2
FAN14G3270 Fragaria x ananassa HOM05D006171 ORTHO05D007294 8.7e-103 378.3 261 68.6
BcaB03g14506 Brassica carinata HOM05D000031 ORTHO05D007294 1.5e-102 377.5 276 67.4
AL1G28240 Arabidopsis lyrata HOM05D006171 ORTHO05D007294 1.9e-102 377.1 274 66.4
Cfa001846 Carpinus fangiana HOM05D006171 ORTHO05D007294 1.9e-102 377.1 279 66.7
Ciclev10025944m.g Citrus clementina HOM05D006171 ORTHO05D007294 1.9e-102 377.1 276 67.8
FAN09G0753 Fragaria x ananassa HOM05D006171 ORTHO05D007294 1.9e-102 377.1 261 68.2
Lj5C82T4 Lonicera japonica HOM05D006171 ORTHO05D007294 1.9e-102 377.1 270 67.4
MD09G1228700 Malus domestica HOM05D006171 ORTHO05D007294 2.5e-102 376.7 261 69.3
Sabra03G0135700 Salix brachista HOM05D006171 ORTHO05D007294 2.5e-102 376.7 283 67.5
AT1G16080 Arabidopsis thaliana HOM05D006171 ORTHO05D007294 4.3e-102 375.9 274 66.1
Actinidia36860 Actinidia chinensis HOM05D006171 ORTHO05D007294 7.3e-102 375.2 262 67.6
Aqoxy7G02339 Aquilegia oxysepala HOM05D006171 ORTHO05D007294 7.3e-102 375.2 261 68.2
COL.COLO4_26789 Corchorus olitorius HOM05D006171 ORTHO05D007294 7.3e-102 375.2 254 69.7
Solyc03g117740.3 Solanum lycopersicum HOM05D006171 ORTHO05D007294 2.1e-101 373.6 261 69.0
TWI12G1342 Tripterygium wilfordii HOM05D006171 ORTHO05D007294 2.8e-101 373.2 267 67.4
AUR62002650 Chenopodium quinoa HOM05D006171 ORTHO05D007294 3.6e-101 372.9 260 67.7
CsaV3_7G031750 Cucumis sativus L. HOM05D006171 ORTHO05D007294 6.2e-101 372.1 280 65.7
Sopen03g036650 Solanum pennellii HOM05D006171 ORTHO05D007294 6.2e-101 372.1 261 68.6
Atru.chr1.2816 Acer truncatum HOM05D006171 ORTHO05D007294 8.1e-101 371.7 275 66.2
Sc10g0006500 Simmondsia chinensis HOM05D006171 ORTHO05D007294 8.1e-101 371.7 261 67.8
MELO3C023482.2 Cucumis melo HOM05D006171 ORTHO05D007294 1.1e-100 371.3 280 65.4
CAN.G1008.12 Capsicum annuum HOM05D006171 ORTHO05D007294 2.4e-100 370.2 287 64.1
Nn2g12468 Nelumbo nucifera HOM05D006171 ORTHO05D007294 2.4e-100 370.2 279 65.9
PGSC0003DMG400014158 Solanum tuberosum HOM05D006171 ORTHO05D007294 2.4e-100 370.2 261 68.2
HPP92_021945 Vanilla planifolia HOM05D006171 ORTHO05D007294 2.4e-100 370.2 273 66.7
Lsat_1_v5_gn_4_84921 Lactuca sativa HOM05D006171 ORTHO05D007294 4.0e-100 369.4 278 64.0
SalBow1G2136 Salvia bowleyana HOM05D006171 ORTHO05D007294 4.0e-100 369.4 306 61.1
BcaB02g06590 Brassica carinata HOM05D006171 ORTHO05D007294 5.3e-100 369.0 279 64.9
Peaxi162Scf00314g01040 Petunia axillaris HOM05D006171 ORTHO05D007294 5.3e-100 369.0 274 64.6
A06p12100 Brassica napus HOM05D006171 ORTHO05D007294 6.9e-100 368.6 278 66.2
BraA06t24379Z Brassica rapa HOM05D006171 ORTHO05D007294 6.9e-100 368.6 279 64.9
Nitab4.5_0004738g0050 Nicotiana tabacum HOM05D006171 ORTHO05D007294 9.0e-100 368.2 272 66.9
GSVIVG01016093001 Vitis vinifera HOM05D006171 ORTHO05D007294 9.0e-100 368.2 243 70.8
Ah.09g231760 Amaranthus hybridus HOM05D006171 ORTHO05D007294 1.2e-99 367.9 274 65.0
vmacro16838 Vaccinium macrocarpon HOM05D006171 ORTHO05D007294 1.2e-99 367.9 251 69.3
HanXRQChr16g0499501 Helianthus annuus HOM05D006171 ORTHO05D007294 2.6e-99 366.7 270 65.2
ClCG09G003450 Citrullus lanatus HOM05D006171 ORTHO05D007294 3.4e-99 366.3 280 64.3
BolC5t30159H Brassica oleracea HOM05D006171 ORTHO05D007294 4.5e-99 365.9 279 64.5
TAR626G1848 Trochodendron aralioides HOM05D006171 ORTHO05D007294 5.8e-99 365.5 265 65.7
ECA232G3902 Erigeron canadensis HOM05D006171 ORTHO05D007294 9.9e-99 364.8 267 65.5
BcaC05g25605 Brassica carinata HOM05D006171 ORTHO05D007294 2.2e-98 363.6 279 63.8
MSTRG.9390 Avicennia marina HOM05D006171 ORTHO05D007294 6.4e-98 362.1 278 64.0
Potri.001G041140 Populus trichocarpa HOM05D006171 ORTHO05D007294 1.1e-97 361.3 277 64.6
CDE07G0158 Ceratophyllum demersum HOM05D006171 ORTHO05D007294 1.9e-97 360.5 277 64.3
SGA_v2.0_scaffold74G24604 Striga asiatica HOM05D006171 ORTHO05D007294 2.4e-97 360.1 254 67.7
C05p14280 Brassica napus HOM05D006171 ORTHO05D007294 4.2e-97 359.4 279 63.8
Zm00001eb177930 Zea mays HOM05D006171 ORTHO05D007294 5.4e-97 359.0 277 65.3
Lalb_Chr25g0278721 Lupinus albus HOM05D006171 ORTHO05D007294 9.3e-97 358.2 257 66.1
Migut.D01148 Erythranthe guttata HOM05D006171 ORTHO05D007294 1.2e-96 357.8 279 63.4
arahy.Tifrunner.gnm1.ann1.B85C5A Arachis hypogaea HOM05D006171 ORTHO05D007294 1.6e-96 357.5 272 65.1
Lj3g0005429 Lotus japonicus HOM05D006171 ORTHO05D007294 1.6e-96 357.5 277 61.4
Oeu003115.1 Olea europaea HOM05D006171 ORTHO05D007294 1.6e-96 357.5 243 68.3
Oeu003116.1 Olea europaea HOM05D006171 ORTHO05D007294 1.6e-96 357.5 243 68.3
arahy.Tifrunner.gnm1.ann1.F1WQ27 Arachis hypogaea HOM05D006171 ORTHO05D007294 2.1e-96 357.1 272 65.1
unitig_62.g23820 Utricularia gibba HOM05D006171 ORTHO05D007294 2.1e-96 357.1 267 64.0
AUR62034059 Chenopodium quinoa HOM05D006171 ORTHO05D007294 7.9e-96 355.1 304 58.2
Medtr4g007910 Medicago truncatula HOM05D006171 ORTHO05D007294 1.3e-95 354.4 269 63.2
Cc04_g05360 Coffea canephora HOM05D006171 ORTHO05D007294 3.0e-95 353.2 243 67.9
Psat7g260440 Pisum sativum HOM05D006171 ORTHO05D007294 1.1e-94 351.3 261 62.8
MBI14_g16440_MAGBIO Magnolia biondii HOM05D006171 ORTHO05D007294 2.5e-94 350.1 252 66.7
Glyma.08G220900 Glycine max HOM05D006171 ORTHO05D007294 3.3e-94 349.7 278 60.4
VMungo0647G1588 Vigna mungo HOM05D006171 ORTHO05D007294 4.3e-94 349.4 278 60.4
Glyma.07G020900 Glycine max HOM05D006171 ORTHO05D007294 5.6e-94 349.0 273 61.2
Phvul.008G253700 Phaseolus vulgaris HOM05D006171 ORTHO05D007294 9.6e-94 348.2 261 62.5
VMungo1309G0227 Vigna mungo HOM05D006171 ORTHO05D007294 9.6e-94 348.2 261 62.5
Phvul.009G155700 Phaseolus vulgaris HOM05D006171 ORTHO05D007294 6.2e-93 345.5 274 60.2
CSS0033272 Camellia sinensis var. sinensis HOM05D006171 ORTHO05D007294 9.9e-91 338.2 261 64.8
Cre10.g435850 Chlamydomonas reinhardtii HOM05D006171 ORTHO05D007294 3.8e-90 336.3 257 66.5
MCO15G666 Micromonas commoda HOM05D006171 ORTHO05D007294 4.2e-89 332.8 269 62.5
EL10Ac8g19420 Beta vulgaris HOM05D006171 ORTHO05D007294 1.1e-86 324.7 299 56.5
PRCOL_00006061 Prasinoderma coloniale HOM05D006171 ORTHO05D007294 2.8e-85 320.1 243 64.2
Gorai.009G121800 Gossypium raimondii HOM05D006171 ORTHO05D007294 9.0e-84 315.1 217 71.0
AagrBONN_evm.TU.Sc2ySwM_344.694 Anthoceros agrestis HOM05D006171 ORTHO05D007294 5.8e-83 312.4 273 60.8
Os08g0266300 Oryza sativa ssp. japonica HOM05D006171 ORTHO05D007294 2.5e-78 297.0 245 64.1
CANSAT64G1829 Cannabis sativa HOM05D006171 ORTHO05D007294 3.7e-77 293.1 192 71.4
FAN05G3051 Fragaria x ananassa HOM05D006171 ORTHO05D007294 3.7e-77 293.1 236 63.1
MD17G1227100 Malus domestica HOM05D006171 ORTHO05D007294 9.0e-76 288.5 190 70.0
PSO170G6342 Papaver somniferum HOM05D006171 ORTHO05D007294 2.6e-75 287.0 192 68.8
PSO017G5952 Papaver somniferum HOM05D006171 ORTHO05D007294 7.6e-75 285.4 192 68.2
ATR0580G215 Amborella trichopoda HOM05D006171 ORTHO05D007294 2.2e-74 283.9 190 69.5
HanXRQChr16g0499491 Helianthus annuus HOM05D006171 ORTHO05D007294 3.8e-74 283.1 274 54.0
Dinv21434 Davidia involucrata HOM05D006171 ORTHO05D007294 1.1e-70 271.6 200 67.5
QL05p037111 Quercus lobata HOM05D006171 ORTHO05D007294 3.1e-68 263.5 186 69.9
Gohir.A05G117000 Gossypium hirsutum HOM05D006171 ORTHO05D007294 1.1e-65 255.0 194 64.4
Hma1.2p1_2173F.1_g316040 Hydrangea macrophylla HOM05D006171 ORTHO05D007294 4.7e-56 223.0 211 57.8
Aqoxy6G02563 Aquilegia oxysepala HOM05D006171 ORTHO05D007294 6.1e-56 222.6 255 47.5
Rhsim12G0183600 Rhododendron simsii HOM05D006171 ORTHO05D007294 4.7e-48 196.4 256 45.3
RcHm_v2.0_Chr2g0132191 Rosa chinensis HOM05D006171 ORTHO05D007294 6.1e-48 196.1 189 54.0
Sed0008158 Sechium edule HOM05D006171 ORTHO05D007294 4.5e-43 179.9 152 61.8
AagrBONN_evm.TU.Sc2ySwM_344.1199 Anthoceros agrestis HOM05D006171 ORTHO05D007294 1.6e-32 144.8 276 34.4
QL05p037113 Quercus lobata HOM05D006171 ORTHO05D007294 9.2e-28 129.0 79 70.9
CDE04G3654 Ceratophyllum demersum HOM05D006171 ORTHO05D007294 1.2e-24 118.6 135 51.1
Cre03.g167050 Chlamydomonas reinhardtii HOM05D006171 ORTHO05D007294 4.7e-24 116.7 327 30.0
SEGI_00638 Sequoiadendron giganteum HOM05D006171 ORTHO05D007294 2.6e-22 110.9 65 78.5
PRCOL_00003410 Prasinoderma coloniale HOM05D006171 ORTHO05D007294 1.0e-18 99.0 286 32.2
RcHm_v2.0_Chr2g0132221 Rosa chinensis HOM05D006171 ORTHO05D007294 9.2e-12 75.9 61 59.0
arahy.Tifrunner.gnm1.ann1.VYJR5C Arachis hypogaea HOM05D006171 ORTHO05D007294 1.9e-09 68.2 99 47.5
Nn5g31109 Nelumbo nucifera HOM05D006171 ORTHO05D007294 4.4e-06 57.0 58 51.7


User provided reference genes

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