Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g36962 Chara braunii HOM05D000243 ORTHO05D136182 0.0e+00 1279.6 744 100.0
HPP92_002158 Vanilla planifolia HOM05D000243 ORTHO05D000278 2.4e-09 68.6 72 47.2
THA.LOC104821029 Tarenaya hassleriana HOM05D000243 ORTHO05D000278 3.4e-08 64.7 78 46.2
Prupe.3G267900 Prunus persica HOM05D000243 ORTHO05D001390 1.0e-07 63.2 74 44.6
Medtr6g012220 Medicago truncatula HOM05D000243 ORTHO05D001390 1.3e-07 62.8 58 48.3
Potri.004G126600 Populus trichocarpa HOM05D000243 ORTHO05D001390 1.3e-07 62.8 49 59.2
CSS0001219 Camellia sinensis var. sinensis HOM05D000243 ORTHO05D001390 2.2e-07 62.0 64 53.1
CARHR019470 Cardamine hirsuta HOM05D000243 ORTHO05D001390 2.2e-07 62.0 56 53.6
Lj1g0011612 Lotus japonicus HOM05D000243 ORTHO05D001390 2.9e-07 61.6 46 58.7
HPP92_002356 Vanilla planifolia HOM05D006971 ORTHO05D009076 2.9e-07 61.6 54 48.1
CiPaw.06G084900 Carya illinoinensis HOM05D000243 ORTHO05D000278 3.8e-07 61.2 89 43.8
Glyma.01G047900 Glycine max HOM05D000243 ORTHO05D000278 3.8e-07 61.2 79 41.8
Glyma.02G107300 Glycine max HOM05D000243 ORTHO05D000278 3.8e-07 61.2 81 43.2
Sed0023102 Sechium edule HOM05D000243 ORTHO05D001390 3.8e-07 61.2 66 50.0
Zm00001eb082590 Zea mays HOM05D000243 ORTHO05D000278 3.8e-07 61.2 43 55.8
Ah.10g031640 Amaranthus hybridus HOM05D000243 ORTHO05D000278 5.0e-07 60.8 81 42.0
Ciclev10004050m.g Citrus clementina HOM05D000243 ORTHO05D000278 5.0e-07 60.8 54 53.7
COL.COLO4_09021 Corchorus olitorius HOM05D000243 ORTHO05D001390 5.0e-07 60.8 49 55.1
Sabra04G0088300 Salix brachista HOM05D000243 ORTHO05D001390 5.0e-07 60.8 68 47.1
ECA246G4364 Erigeron canadensis HOM05D000243 ORTHO05D001390 6.5e-07 60.5 58 44.8
AUR62034420 Chenopodium quinoa HOM05D000243 ORTHO05D000278 8.5e-07 60.1 81 39.5
AUR62039795 Chenopodium quinoa HOM05D000243 ORTHO05D000278 8.5e-07 60.1 81 39.5
MD17G1051200 Malus domestica HOM05D000243 ORTHO05D001390 8.5e-07 60.1 66 47.0
Aa31LG11G14330 Aethionema arabicum HOM05D000243 ORTHO05D000278 1.1e-06 59.7 76 44.7
AT5G15210 Arabidopsis thaliana HOM05D000243 ORTHO05D000278 1.1e-06 59.7 76 43.4
Carub.0006s1339 Capsella rubella HOM05D000243 ORTHO05D000278 1.1e-06 59.7 76 43.4
Duzib147G1516 Durio zibethinus HOM05D000243 ORTHO05D001390 1.1e-06 59.7 68 48.5
ECA238G3906 Erigeron canadensis HOM05D000243 ORTHO05D001390 1.1e-06 59.7 55 49.1
Thhalv10016088m.g Eutrema salsugineum HOM05D000243 ORTHO05D000278 1.1e-06 59.7 76 43.4
MD09G1051100 Malus domestica HOM05D000243 ORTHO05D001390 1.1e-06 59.7 66 47.0
HPP92_002384 Vanilla planifolia HOM05D000243 ORTHO05D001390 1.1e-06 59.7 59 44.1
Actinidia36011 Actinidia chinensis HOM05D000243 ORTHO05D001390 1.4e-06 59.3 49 55.1
Aa31LG4G11150 Aethionema arabicum HOM05D000243 ORTHO05D000278 1.4e-06 59.3 65 47.7
ClCG09G018240 Citrullus lanatus HOM05D000243 ORTHO05D001390 1.4e-06 59.3 65 49.2
MELO3C021987.2 Cucumis melo HOM05D000243 ORTHO05D001390 1.4e-06 59.3 65 49.2
Lsat_1_v5_gn_1_12721 Lactuca sativa HOM05D000243 ORTHO05D001390 1.4e-06 59.3 58 48.3
Lsat_1_v5_gn_4_107981 Lactuca sativa HOM05D000243 ORTHO05D001390 1.4e-06 59.3 71 42.3
THA.LOC104824087 Tarenaya hassleriana HOM05D000243 ORTHO05D000278 1.4e-06 59.3 78 35.9
HPP92_002354 Vanilla planifolia HOM05D000243 ORTHO05D001390 1.4e-06 59.3 59 44.1
HPP92_013059 Vanilla planifolia HOM05D000243 ORTHO05D001390 1.4e-06 59.3 62 45.2
VMungo1215G2046 Vigna mungo HOM05D000243 ORTHO05D000278 1.4e-06 59.3 79 41.8
BcaB03g14732 Brassica carinata HOM05D000243 ORTHO05D000278 1.9e-06 58.9 79 44.3
BcaC08g46404 Brassica carinata HOM05D000243 ORTHO05D000278 1.9e-06 58.9 95 42.1
A07p35980 Brassica napus HOM05D000243 ORTHO05D000278 1.9e-06 58.9 95 42.1
C06p43390 Brassica napus HOM05D000243 ORTHO05D000278 1.9e-06 58.9 95 42.1
BolC6t39415H Brassica oleracea HOM05D000243 ORTHO05D000278 1.9e-06 58.9 95 42.1
BraA07t31181Z Brassica rapa HOM05D000243 ORTHO05D000278 1.9e-06 58.9 95 42.1
CsaV3_5G038010 Cucumis sativus L. HOM05D000243 ORTHO05D001390 1.9e-06 58.9 49 55.1
FvH4_5g14960 Fragaria vesca HOM05D000243 ORTHO05D001390 1.9e-06 58.9 49 53.1
FAN04G0716 Fragaria x ananassa HOM05D000243 ORTHO05D001390 1.9e-06 58.9 49 53.1
FAN08G2147 Fragaria x ananassa HOM05D000243 ORTHO05D001390 1.9e-06 58.9 49 53.1
FAN18G3644 Fragaria x ananassa HOM05D000243 ORTHO05D001390 1.9e-06 58.9 49 53.1
Phvul.002G085400 Phaseolus vulgaris HOM05D000243 ORTHO05D000278 1.9e-06 58.9 78 41.0
AL1G31360 Arabidopsis lyrata HOM05D000243 ORTHO05D001390 2.5e-06 58.5 44 59.1
AL6G26060 Arabidopsis lyrata HOM05D000243 ORTHO05D000278 2.5e-06 58.5 76 42.1
AT1G18835 Arabidopsis thaliana HOM05D000243 ORTHO05D001390 2.5e-06 58.5 44 59.1
BcaB03g14478 Brassica carinata HOM05D000243 ORTHO05D001390 2.5e-06 58.5 61 49.2
CiPaw.04G017300 Carya illinoinensis HOM05D000243 ORTHO05D001390 2.5e-06 58.5 49 53.1
CiPaw.05G135200 Carya illinoinensis HOM05D000243 ORTHO05D000278 2.5e-06 58.5 89 43.8
Duzib187G1669 Durio zibethinus HOM05D000243 ORTHO05D001390 2.5e-06 58.5 68 47.1
MBI17_g01784_MAGBIO Magnolia biondii HOM05D000243 ORTHO05D000278 2.5e-06 58.5 43 53.5
Manes.01G090800 Manihot esculenta HOM05D000243 ORTHO05D001390 2.5e-06 58.5 63 50.8
Rhsim08G0069400 Rhododendron simsii HOM05D000243 ORTHO05D001390 2.5e-06 58.5 51 51.0
Sabra17G0073400 Salix brachista HOM05D000243 ORTHO05D001390 2.5e-06 58.5 69 46.4
SEGI_35720 Sequoiadendron giganteum HOM05D000243 ORTHO05D000278 2.5e-06 58.5 51 43.1
MSTRG.2471 Avicennia marina HOM05D000243 ORTHO05D000278 3.2e-06 58.2 78 35.9
CARHR198100 Cardamine hirsuta HOM05D000243 ORTHO05D000278 3.2e-06 58.2 76 42.1
Cpa.g.sc786.1 Carica papaya HOM05D000243 ORTHO05D001390 3.2e-06 58.2 61 45.9
ClCG04G012260 Citrullus lanatus HOM05D000243 ORTHO05D001390 3.2e-06 58.2 61 45.9
MELO3C001982.2 Cucumis melo HOM05D000243 ORTHO05D001390 3.2e-06 58.2 61 45.9
CsaV3_1G005490 Cucumis sativus L. HOM05D000243 ORTHO05D001390 3.2e-06 58.2 61 45.9
Eucgr.K02471 Eucalyptus grandis HOM05D000243 ORTHO05D001390 3.2e-06 58.2 65 46.2
Thhalv10009699m.g Eutrema salsugineum HOM05D000243 ORTHO05D001390 3.2e-06 58.2 59 49.2
Lsat_1_v5_gn_3_100380 Lactuca sativa HOM05D000243 ORTHO05D001390 3.2e-06 58.2 56 50.0
Lalb_Chr02g0159381 Lupinus albus HOM05D000243 ORTHO05D001390 3.2e-06 58.2 49 53.1
Manes.02G046200 Manihot esculenta HOM05D000243 ORTHO05D001390 3.2e-06 58.2 49 55.1
Manes.14G077733 Manihot esculenta HOM05D000243 ORTHO05D001390 3.2e-06 58.2 63 46.0
Oeu011863.1 Olea europaea HOM05D000243 ORTHO05D001390 3.2e-06 58.2 63 47.6
Os04g0434500 Oryza sativa ssp. japonica HOM05D000243 ORTHO05D000278 3.2e-06 58.2 43 51.2
Phvul.009G187500 Phaseolus vulgaris HOM05D000243 ORTHO05D001390 3.2e-06 58.2 49 53.1
Sc11g0007090 Simmondsia chinensis HOM05D000243 ORTHO05D001390 3.2e-06 58.2 68 47.1
TAR374G1202 Trochodendron aralioides HOM05D000243 ORTHO05D000278 3.2e-06 58.2 89 40.4
A09p03860 Brassica napus HOM05D000243 ORTHO05D001390 4.2e-06 57.8 63 46.0
A09p59670 Brassica napus HOM05D000243 ORTHO05D001390 4.2e-06 57.8 61 47.5
C09p04100 Brassica napus HOM05D000243 ORTHO05D001390 4.2e-06 57.8 63 46.0
BolC9t53340H Brassica oleracea HOM05D000243 ORTHO05D001390 4.2e-06 57.8 63 46.0
BraA09t36023Z Brassica rapa HOM05D000243 ORTHO05D001390 4.2e-06 57.8 63 46.0
BraA09t41344Z Brassica rapa HOM05D000243 ORTHO05D001390 4.2e-06 57.8 61 47.5
MD06G1193200 Malus domestica HOM05D000243 ORTHO05D001390 4.2e-06 57.8 65 43.1
Psat4g050800 Pisum sativum HOM05D000243 ORTHO05D001390 4.2e-06 57.8 46 56.5
Sp5g24720 Schrenkiella parvula HOM05D000243 ORTHO05D000278 4.2e-06 57.8 95 41.1
COL.COLO4_33302 Corchorus olitorius HOM05D000243 ORTHO05D001390 5.5e-06 57.4 49 53.1
FAN02G4622 Fragaria x ananassa HOM05D000243 ORTHO05D000278 5.5e-06 57.4 78 41.0
FAN14G2673 Fragaria x ananassa HOM05D000243 ORTHO05D000278 5.5e-06 57.4 78 41.0
Glyma.13G062900 Glycine max HOM05D000243 ORTHO05D000278 5.5e-06 57.4 62 46.8
Gohir.D07G211600 Gossypium hirsutum HOM05D000243 ORTHO05D001390 5.5e-06 57.4 66 47.0
Gorai.001G239100 Gossypium raimondii HOM05D000243 ORTHO05D001390 5.5e-06 57.4 66 47.0
HanXRQChr17g0548381 Helianthus annuus HOM05D000243 ORTHO05D001390 5.5e-06 57.4 72 41.7
Lj4g0012297 Lotus japonicus HOM05D000243 ORTHO05D000278 5.5e-06 57.4 73 42.5
Lalb_Chr09g0329271 Lupinus albus HOM05D000243 ORTHO05D000278 5.5e-06 57.4 59 49.2
MBI02_g41665_MAGBIO Magnolia biondii HOM05D000243 ORTHO05D001390 5.5e-06 57.4 64 43.8
Os08g0479400 Oryza sativa ssp. japonica HOM05D000243 ORTHO05D000278 5.5e-06 57.4 77 42.9
Potri.017G082701 Populus trichocarpa HOM05D000243 ORTHO05D001390 5.5e-06 57.4 49 53.1
Prupe.5G193300 Prunus persica HOM05D000243 ORTHO05D001390 5.5e-06 57.4 65 43.1
PGR044G0023 Punica granatum HOM05D000243 ORTHO05D001390 5.5e-06 57.4 49 53.1
Solyc05g007580.1 Solanum lycopersicum HOM05D000243 ORTHO05D000278 5.5e-06 57.4 67 44.8
Sopen05g003470 Solanum pennellii HOM05D000243 ORTHO05D000278 5.5e-06 57.4 67 44.8
Thecc.03G086900 Theobroma cacao HOM05D000243 ORTHO05D001390 5.5e-06 57.4 49 51.0
Thecc.04G081600 Theobroma cacao HOM05D000243 ORTHO05D001390 5.5e-06 57.4 49 53.1
TPR.G21397 Trifolium pratense HOM05D000243 ORTHO05D001390 5.5e-06 57.4 49 51.0
TWI32G1310 Tripterygium wilfordii HOM05D000243 ORTHO05D001390 5.5e-06 57.4 49 55.1
unitig_899.g15522 Utricularia gibba HOM05D000243 ORTHO05D000278 5.5e-06 57.4 78 42.3
Zm00001eb179960 Zea mays HOM05D000243 ORTHO05D000278 5.5e-06 57.4 53 52.8
Aa31LG2G4290 Aethionema arabicum HOM05D000243 ORTHO05D001390 7.2e-06 57.0 66 45.5
AL5G18700 Arabidopsis lyrata HOM05D000243 ORTHO05D001390 7.2e-06 57.0 50 52.0
AT3G28917 Arabidopsis thaliana HOM05D000243 ORTHO05D001390 7.2e-06 57.0 50 52.0
MSTRG.3238 Avicennia marina HOM05D000243 ORTHO05D000278 7.2e-06 57.0 65 46.2
BcaC06g33653 Brassica carinata HOM05D000243 ORTHO05D001390 7.2e-06 57.0 50 52.0
BcaNung05134 Brassica carinata HOM05D000243 ORTHO05D001390 7.2e-06 57.0 50 52.0
A06p40260 Brassica napus HOM05D000243 ORTHO05D001390 7.2e-06 57.0 50 52.0
C07p37820 Brassica napus HOM05D000243 ORTHO05D001390 7.2e-06 57.0 50 52.0
BolC7t44303H Brassica oleracea HOM05D000243 ORTHO05D001390 7.2e-06 57.0 50 52.0
BraA06t26943Z Brassica rapa HOM05D000243 ORTHO05D001390 7.2e-06 57.0 50 52.0
Carub.0005s0746 Capsella rubella HOM05D000243 ORTHO05D001390 7.2e-06 57.0 50 52.0
Cfa018944 Carpinus fangiana HOM05D000243 ORTHO05D001390 7.2e-06 57.0 61 45.9
Dinv11527 Davidia involucrata HOM05D000243 ORTHO05D001390 7.2e-06 57.0 49 51.0
ECA247G2357 Erigeron canadensis HOM05D000243 ORTHO05D001390 7.2e-06 57.0 49 51.0
Thhalv10005183m.g Eutrema salsugineum HOM05D000243 ORTHO05D001390 7.2e-06 57.0 50 52.0
FAN02G4204 Fragaria x ananassa HOM05D000243 ORTHO05D001390 7.2e-06 57.0 64 45.3
FAN05G0970 Fragaria x ananassa HOM05D000243 ORTHO05D001390 7.2e-06 57.0 64 45.3
Gohir.A11G031061 Gossypium hirsutum HOM05D000243 ORTHO05D001390 7.2e-06 57.0 49 51.0
Gohir.D11G034400 Gossypium hirsutum HOM05D000243 ORTHO05D001390 7.2e-06 57.0 49 51.0
Gorai.007G037300 Gossypium raimondii HOM05D000243 ORTHO05D001390 7.2e-06 57.0 49 51.0
Gorai.008G044700 Gossypium raimondii HOM05D000243 ORTHO05D015626 7.2e-06 57.0 71 39.4
Lalb_Chr06g0175341 Lupinus albus HOM05D000243 ORTHO05D001390 7.2e-06 57.0 49 51.0
Os08g0438400 Oryza sativa ssp. japonica HOM05D000243 ORTHO05D000278 7.2e-06 57.0 63 49.2
Peaxi162Scf00011g00321 Petunia axillaris HOM05D000243 ORTHO05D000278 7.2e-06 57.0 68 44.1
Peaxi162Scf00270g00002 Petunia axillaris HOM05D000243 ORTHO05D000278 7.2e-06 57.0 52 50.0
Phvul.004G028600 Phaseolus vulgaris HOM05D000243 ORTHO05D000278 7.2e-06 57.0 62 46.8
Sp2g17540 Schrenkiella parvula HOM05D000243 ORTHO05D001390 7.2e-06 57.0 50 52.0
TPR.G11941 Trifolium pratense HOM05D000243 ORTHO05D001390 7.2e-06 57.0 49 51.0
TWI34G0147 Tripterygium wilfordii HOM05D000243 ORTHO05D001390 7.2e-06 57.0 49 53.1
TWI81G0753 Tripterygium wilfordii HOM05D000243 ORTHO05D001390 7.2e-06 57.0 61 45.9
unitig_52.g17582 Utricularia gibba HOM05D000243 ORTHO05D001390 7.2e-06 57.0 57 47.4
HPP92_023412 Vanilla planifolia HOM05D000243 ORTHO05D001390 7.2e-06 57.0 43 53.5
VMungo0464G0973 Vigna mungo HOM05D000243 ORTHO05D000278 7.2e-06 57.0 62 46.8
Zm00001eb195830 Zea mays HOM05D000243 ORTHO05D001390 7.2e-06 57.0 43 53.5
Atru.chr9.161 Acer truncatum HOM05D000243 ORTHO05D001390 9.4e-06 56.6 49 51.0
Actinidia06093 Actinidia chinensis HOM05D000243 ORTHO05D001390 9.4e-06 56.6 49 49.0
Actinidia26221 Actinidia chinensis HOM05D000243 ORTHO05D001390 9.4e-06 56.6 49 51.0
arahy.Tifrunner.gnm1.ann1.75AC6V Arachis hypogaea HOM05D000243 ORTHO05D001390 9.4e-06 56.6 49 51.0
BcaC05g25782 Brassica carinata HOM05D000243 ORTHO05D001390 9.4e-06 56.6 59 47.5
BcaC07g38952 Brassica carinata HOM05D000243 ORTHO05D001390 9.4e-06 56.6 59 47.5
A06p15040 Brassica napus HOM05D000243 ORTHO05D001390 9.4e-06 56.6 59 47.5
C05p17230 Brassica napus HOM05D000243 ORTHO05D001390 9.4e-06 56.6 59 47.5
C08p18980 Brassica napus HOM05D000243 ORTHO05D001390 9.4e-06 56.6 59 47.5
BolC5t30423H Brassica oleracea HOM05D000243 ORTHO05D001390 9.4e-06 56.6 59 47.5
BolC8t49522H Brassica oleracea HOM05D000243 ORTHO05D001390 9.4e-06 56.6 59 47.5
BraA06t24618Z Brassica rapa HOM05D000243 ORTHO05D001390 9.4e-06 56.6 59 47.5
Ciclev10032160m.g Citrus clementina HOM05D000243 ORTHO05D000278 9.4e-06 56.6 87 39.1
Cc04_g16620 Coffea canephora HOM05D000243 ORTHO05D001390 9.4e-06 56.6 63 46.0
Duzib205G2066 Durio zibethinus HOM05D000243 ORTHO05D001390 9.4e-06 56.6 49 51.0
ECA246G0030 Erigeron canadensis HOM05D000243 ORTHO05D000278 9.4e-06 56.6 86 38.4
Glyma.04G169900 Glycine max HOM05D000243 ORTHO05D001390 9.4e-06 56.6 49 51.0
Glyma.13G063100 Glycine max HOM05D000243 ORTHO05D001390 9.4e-06 56.6 56 46.4
MD14G1200200 Malus domestica HOM05D000243 ORTHO05D001390 9.4e-06 56.6 63 44.4
Medtr3g039810 Medicago truncatula HOM05D000243 ORTHO05D001390 9.4e-06 56.6 49 51.0
RcHm_v2.0_Chr7g0181371 Rosa chinensis HOM05D000243 ORTHO05D001390 9.4e-06 56.6 49 51.0
Sp1g16810 Schrenkiella parvula HOM05D000243 ORTHO05D001390 9.4e-06 56.6 59 47.5
PGSC0003DMG400031256 Solanum tuberosum HOM05D000243 ORTHO05D000278 9.4e-06 56.6 67 44.8
TAR374G1486 Trochodendron aralioides HOM05D000243 ORTHO05D001390 9.4e-06 56.6 65 44.6
Zm00001eb163680 Zea mays HOM05D000243 ORTHO05D001390 9.4e-06 56.6 54 50.0


User provided reference genes

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